KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:06 2014 Check: 00 .. Name: ENSP00000332646/1-455 Len: 502 Check: 4553 Weight: 1.00 Name: ENSBTAP00000028155/1-456 Len: 502 Check: 7684 Weight: 1.00 Name: ENSTTRP00000008989/1-455 Len: 502 Check: 5476 Weight: 1.00 Name: bmy_05453T0/1-502 Len: 502 Check: 9676 Weight: 1.00 Name: BACU019582/1-441 Len: 502 Check: 9178 Weight: 1.00 // 1 50 ENSP00000332646/1-455 ---------- ---------- ---------- ---------- ------MGWG ENSBTAP00000028155/1-456 ---------- ---------- ---------- ---------- ------MGCG ENSTTRP00000008989/1-455 ---------- ---------- ---------- ---------- ------MAWG bmy_05453T0/1-502 WRGVVGVRSP LAGPFRLRPS ISLSVRSVDP ADPPHAQPGR IGAAPIMGWG BACU019582/1-441 ---------- ---------- ---------- ---------- ------MGWG 51 100 ENSP00000332646/1-455 GGGGCTPRPP IHQQP-PERR VVTVVFLGLL LDLLAFTLLL PLLPGLLESH ENSBTAP00000028155/1-456 AGGSCTPRPP IRQQQAPETR VVAVVFLGLL LDLLAFTLLL PLLPGLLESH ENSTTRP00000008989/1-455 AGGSCTPRPP IHQQPAPETR VIAVVFLGLL LDLLAFTLLL PLLPALLESH bmy_05453T0/1-502 AGGSCTPRPP IRQQPAPETR VVAVVFLGLL LDLLAFTLLL PLLPALLERH BACU019582/1-441 AGGSCTPRPP IRQQPAPETR VVAVVFLGLL LDLLAFTLLL PLLPALLERH 101 150 ENSP00000332646/1-455 GRAHDPLYGS WQGGVDWFAT AIGMPVEKRY NSVLFGGLIG SAFSVLQFLC ENSBTAP00000028155/1-456 GRAHDPLYGS WQRGVDWFAA AIGMPAEKRY NSVLFGGLIG SVFSLLQFLS ENSTTRP00000008989/1-455 GRAQDPLYGS WQRGVDWFAS AIGMPAEKRY NSVLFGGLIG SIFCFLQFLS bmy_05453T0/1-502 GRVQDPLYGS WQRGVDWFAA AIGTPAEKRY NTVLFGGLIG SVFSLLQFLS BACU019582/1-441 GRVQDPLYGS WQRGGGWVAA AIGMPAEKRY NTVLFGGLIG FVFSLLQFLS 151 200 ENSP00000332646/1-455 APLTGATSDC LGRRPVMLLC LMGVATSYAV WATSRSFAAF LASRLIGGIS ENSBTAP00000028155/1-456 APLTGALSDC LGRRPGMLLS LAGVATSYAV WAASKSFAAF LASRVIGGIS ENSTTRP00000008989/1-455 APLTGAISDC LGRRPVMLLS LAGLATSYAV WATSKSFAAF LASRMIGGIS bmy_05453T0/1-502 APLTGAVSDC LGRRPVMLLS LAGLATSYAV WAASKSFAAF LVSRMIGGIS BACU019582/1-441 APLTGAVSDC LGRRPVLLLS LAGLATSYAV WAASKSFAAF LVSRIIGGIS 201 250 ENSP00000332646/1-455 KGNVSLSTAI VADLGSPLAR SQGMAVIGVA FSLGFTLGPM LGASLPLEMA ENSBTAP00000028155/1-456 KGNVSLCTAI VADLGSPSAR SKGMAVIGVA FSLGFTLGPT LGAFLPSETV ENSTTRP00000008989/1-455 KGNVSLSTAI VADLGSSPAR SRGMAVIGVA FSLAFTLGPM LGASLPVETA bmy_05453T0/1-502 KGNVSLSTAI VADLGSSSAR SRGMAVIGVA FSLAFTLGPM LGASLPVETA BACU019582/1-441 KGNVSLSTAI VADLGSSPAR SRGMAVIGVA FSLAFTLGPM LGASLPVETA 251 300 ENSP00000332646/1-455 PWFALLFAAS DLLFIFCFLP ETLPLEKRAP SIALGFRDAA DLLSPLALLR ENSBTAP00000028155/1-456 PWLALLFAVS DLLFIWCFLP ETLPPEKRAP SVTLGFRAAA DLLSPLALLR ENSTTRP00000008989/1-455 PWLALLFAVS DLLFICCFLP ETLPPEKRAP SITLGFRAAV DLLSPLALLC bmy_05453T0/1-502 PWLALLFAVS DLLFISCFLP ETLPPEKRAP SITLGFRAAV DLLSPLALLC BACU019582/1-441 PWLALLFAVS DLLFIFCFLP ETLPPEKRAP SITLGFRAAV DLLSPLALLC 301 350 ENSP00000332646/1-455 FSAVARGQDP PSGDRLSSLR RLGLVYFLYL FLFSGLEYTL SFLTHQRFQF ENSBTAP00000028155/1-456 FSAVARGPDP PTGVRLGSLR GLGLVYFLYL FLFSGLEFTL SFLVHQRFRF ENSTTRP00000008989/1-455 FSAVARGPDP PTGVRLGSLR LLGLVYFLYL FLFSGLEFTL SFLVHQRFQF bmy_05453T0/1-502 FSAVARGPDP PTGVRLGSLR LLGLVYFLYL FLFSGVEFTL SFLVHQRFQF BACU019582/1-441 FSAVARGPDP PTGVRLGSLR LLGLVYFLYL FLFSGLD--- ---------- 351 400 ENSP00000332646/1-455 SSLQQGKMFF LIGLTMATIQ GAYARRIHPG GEVAAVKRAL LLLVPAFLLI ENSBTAP00000028155/1-456 SRVEQGKMFF FIGLTMATIQ GAYARRIRPG REIAAVKQAI LLLIPASLFV ENSTTRP00000008989/1-455 SXXXXXXXXX XIGLTMATIQ GAYARRISPG GEIAAVKRAI LLLVPAFLLI bmy_05453T0/1-502 SSLEQGKMFF FIGLTMATIQ GAYARRISPG GEIAAVKRAI LLLVPAFLLI BACU019582/1-441 --LEQGKMFF FIGLTMATIQ GAYARRISLG GEIAAVKRAI LLLIPAFLLI 401 450 ENSP00000332646/1-455 GWGRSLPVLG LGLLLYSFAA AVVVPCLSSV VAGYGSPGQK GTVMGTLRSL ENSBTAP00000028155/1-456 GWGHTLPILG LGLLLYSWAA AVVVPCLSSV VAGYGSPGQK GTVMGTLRSL ENSTTRP00000008989/1-455 GWGHTLPVLG LGLLLYSFAA AIVVPCLSSV VASYGSPGQK GVVMGTLRSL bmy_05453T0/1-502 GWGHTLPVLG LGLLLYSFAA AIVVPCLSSV VAGYGSPGQK GVVMGTLRSL BACU019582/1-441 GWGHTLPVLG LGLLLYSFAA AIVVPCLSSV VAGYGSPWQK GVVMGTLRSL 451 500 ENSP00000332646/1-455 GALARAAGPL VAASVYWLAG AQACFTTWSG LFLLPFFLLQ KLSYPAQTLK ENSBTAP00000028155/1-456 GALARAVGPV VAASAYWLAG ARVCYTVCAA LFLLPFSILR TLSPPARTLK ENSTTRP00000008989/1-455 GALARALGPM VAASAYWLAG AQGCYTVCAG LFLLPFSLLR KLR-PAATLK bmy_05453T0/1-502 GALARALGPT VAASVYWLAG ARVCYTVCAG LFLLPFSLLR KLRPPAGTLK BACU019582/1-441 GALARALGPT VAASAYWLAG ARVCYTVCAG LFLLPFSLLR KLRPPAGTLK 501 550 ENSP00000332646/1-455 AE ENSBTAP00000028155/1-456 AE ENSTTRP00000008989/1-455 AE bmy_05453T0/1-502 AE BACU019582/1-441 AE