KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:08 2014 Check: 00 .. Name: bmy_13248T0/1-880 Len: 934 Check: 7104 Weight: 1.00 Name: ENSP00000465039/1-833 Len: 934 Check: 8719 Weight: 1.00 Name: ENSBTAP00000028180/1-798 Len: 934 Check: 4369 Weight: 1.00 Name: ENSTTRP00000010110/1-737 Len: 934 Check: 1613 Weight: 1.00 Name: BACU008339/1-743 Len: 934 Check: 1764 Weight: 1.00 // 1 50 bmy_13248T0/1-880 MDFVDPDIFN RDPRDHYDLL QRLGGGTYGE VCPSQALRAQ GTGGGAGCTA ENSP00000465039/1-833 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028180/1-798 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010110/1-737 ---------- ---------- ---------- ---------- ---------- BACU008339/1-743 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13248T0/1-880 LCWRAQLRAP GMDFVDPDIF NRDPRDHYDL LQRLGGGTYG EVFKARDKVT ENSP00000465039/1-833 ---------- -MDVVDPDIF NRDPRDHYDL LQRLGGGTYG EVFKARDKVS ENSBTAP00000028180/1-798 ---------- -MDLVDPDIF NRDPRDHYDL LQRLGGGTYG EVFKAREKVT ENSTTRP00000010110/1-737 ---------- ---------- ---------- ---------- ---------- BACU008339/1-743 ---------- -MDFVDPDIF NRDPRDHYDL LQRLGGGTYG EVFKARDKVT 101 150 bmy_13248T0/1-880 GDLVALKMVK MEPDDDVSTL QKEILILKTC RHANIVAYHG SYLWLQKLWI ENSP00000465039/1-833 GDLVALKMVK MEPDDDVSTL QKEILILKTC RHANIVAYHG SYLWLQKLWI ENSBTAP00000028180/1-798 GDLVALKMVK MEPDDDVSTL QKEILILKTC RHANIVAYHG SYLWLQKLWI ENSTTRP00000010110/1-737 ---------- ----DDV-TL QKEILILK-C RHANIV-YHG SYLWLQKLWI BACU008339/1-743 GDLVALKMVK MEPDDDVSTL QKEILILKTC RHANIVAYHG SYLWLQKLWI 151 200 bmy_13248T0/1-880 CMEFCGAGSL QDIYQVTGPL SELQISYVCR EVLQ------ ---------- ENSP00000465039/1-833 CMEFCGAGSL QDIYQVTGSL SELQISYVCR EVLQGLAYLH SQKKIHRDIK ENSBTAP00000028180/1-798 CMEFCGAGSL QDIYQVTGSL SELQISYVCR EVLQGLAYLH SQKKIHRDIK ENSTTRP00000010110/1-737 CMEFCGAGSL QDIYQVTGPL SELQISYVCR EVLQGLAYLH SQKKIHRDIK BACU008339/1-743 CMEFCGAGSL QDIYQVTGPL SELQISYVCR EVLQGLAYLH SQKKIHRDIK 201 250 bmy_13248T0/1-880 GANILINDAG EVRLADFGIS AQIGATLARR LSFIGTPYWM APEVAAVALK ENSP00000465039/1-833 GANILINDAG EVRLADFGIS AQIGATLARR LSFIGTPYWM APEVAAVALK ENSBTAP00000028180/1-798 GANILINDAG EVRLADFGIS AQIGATLARR LSFIGTPYWM APEVAAVALK ENSTTRP00000010110/1-737 GANILINDAG EVRLADFGIS AQIGATLARR LSFIGTPYWM APEVAAVALK BACU008339/1-743 GANILINDAG EVRLADFGIS AQIGATLARR LSFIGTPYWM APEVAAVALK 251 300 bmy_13248T0/1-880 GGYNELCDIW SLGVTAIELA ELQPPLFDVH PLRVLFLMTK SGYQPPRLKE ENSP00000465039/1-833 GGYNELCDIW SLGITAIELA ELQPPLFDVH PLRVLFLMTK SGYQPPRLKE ENSBTAP00000028180/1-798 GGYNELCDIW SLGITAIELA ELQPPLFDVH PLRVLFLMTK SGYQPPRLKD ENSTTRP00000010110/1-737 GGYNELCDIW SLGVTAIELA ELQPPLFDVH PLRVLFLMTK SGYQ--QLKK BACU008339/1-743 GGYNELCDIW SLGVTAIELA ELQPPLFDVH PLRVLFLMTK SGYQPPRLKE 301 350 bmy_13248T0/1-880 KGKWSAAFHN FVKVTLTKSP KKRPGATKML SHQLVSQPGL NRGLIVDLLD ENSP00000465039/1-833 KGKWSAAFHN FIKVTLTKSP KKRPSATKML SHQLVSQPGL NRGLILDLLD ENSBTAP00000028180/1-798 KGKWSAAFHN FVKVTLTKSP KKRPSATKML THQLVSQPGL NRGLILDLLD ENSTTRP00000010110/1-737 R-KXXXXXXN FV-VTLTKSP KKRPSATKML THQLVSQPGL NRGLIVDLLD BACU008339/1-743 KGKWSAAFHN FVKVTLTKSP KKRPGATKML SHQLVSQPGL NRGLIVDLLD 351 400 bmy_13248T0/1-880 KLRNPGKGAP VGEIEDEEPE LPPAIPRRIR STHRSSSLGI PDADCCRRHM ENSP00000465039/1-833 KLKNPGKGPS IGDIEDEEPE LPPAIPRRIR STHRSSSLGI PDADCCRRHM ENSBTAP00000028180/1-798 KLRNPGKGAP VGEIEDEDPE LPPAIPRRIR STHRASSLGI PDADCCRRHM ENSTTRP00000010110/1-737 KLRNPGKGAP VGEIEDEEPE LPPAIPRRIR STHRSSSLGI PDADCCRRHM BACU008339/1-743 KLRNPGKGAP VGEIEDEEPE ---------- ---------- ---------- 401 450 bmy_13248T0/1-880 EFRKLRGMES RPTADTVRLQ PPGDFRSSSP RRHLSE-SDD DYDDVDIPTP ENSP00000465039/1-833 EFRKLRGMET RPPANTARLQ PPRDLRSSSP RKQLSESSDD DYDDVDIPTP ENSBTAP00000028180/1-798 EFRKLRGMES RPPVDTALLQ PPEDFKSGSP RRNLSE-SDD DYDDVDIPAP ENSTTRP00000010110/1-737 EFRKLRGMES RPTADTARLQ PPGDFKSSSP RRHLSE-SDD DYDDVDIPTP BACU008339/1-743 ---------- ------ARLQ PPGDFRSSSP RRHLSE-SDD DYDDVDIPTP 451 500 bmy_13248T0/1-880 AEDTPPPLPP KPKFRSPSDE GPGGTGDEGQ LSPGVLVRCA SGPPPRTPHL ENSP00000465039/1-833 AEDTPPPLPP KPKFRSPSDE GPGSMGDDGQ LSPGVLVRCA SGPPPNSPRP ENSBTAP00000028180/1-798 AEDTPPPLPP KPKFRSPSDE GPGGTGDDGQ LSPGVLVRCA SGPPPRTPHL ENSTTRP00000010110/1-737 AEDTPPPLPP KPKFRSPSDE GPGETGDEGQ LSPGVLVRCA SGPPPRTPHL BACU008339/1-743 AEDTPPPLPP KPKFHSPSDE GPGGTGDEGQ LSPGVLVRCA SGPPPRTPHL 501 550 bmy_13248T0/1-880 GPPPATRSPH LTAHSEPSLW NPAPREPDQP PLLPPKKEKM KR-------K ENSP00000465039/1-833 GPPPSTSSPH LTAHSEPSLW NPPSRELDKP PLLPPKKEKM KRKGCALLVK ENSBTAP00000028180/1-798 GPPPATRSPH LTAHSEPSLW NPAPREPDQP PLLPPKKEKM KRKGCALLVK ENSTTRP00000010110/1-737 GPPPVTRSPH LTAHSEPSLW NPAPWEPDQP PLLPPKKEKM KRKGCALLVK BACU008339/1-743 GPPPATRSPH LTAHSEPSLW NPAPREPDQP PLLPPKKEKM KRKGCALLVK 551 600 bmy_13248T0/1-880 LFNGCPLRIH STAAWTHPST KDQHLLLGAE EGIFILNRND QEATLEMERP ENSP00000465039/1-833 LFNGCPLRIH STAAWTHPST KDQHLLLGAE EGIFILNRND QEATLEMLFP ENSBTAP00000028180/1-798 LFNGCPLRIH STAAWTHPST KDQHLLLGAE EGIFILNRND QEATLEMLFS ENSTTRP00000010110/1-737 LFNGCPLRIH STAAWTHPST KDQHLLLGAE EGIFILNRND QEATLEMLFS BACU008339/1-743 LFNGCPLRIH STAAWTHPST KDQHLLLGAE EGIFILNRND QEATLEMLFS 601 650 bmy_13248T0/1-880 PTCILIASWA Y--------W NGKRPEQEAP SLTLAPTGYW QGRTWSPLRS ENSP00000465039/1-833 SRTT----WV YSINNVLMSL SGKTPHLYSH SI-LGLLERK ETRAGNPIAH ENSBTAP00000028180/1-798 GRTT----WV YSINNVLMSL SGKTPYLYSH SI-LGLLERK EGRTGSPIAH ENSTTRP00000010110/1-737 SRTT----WV YSINNVLMSL SGKTPHLYSH SI-LGLLERK EARTGSPIAH BACU008339/1-743 SRTT----WV YSINNVLMSL SG-------- ---LAMAG-- ---------- 651 700 bmy_13248T0/1-880 RTPKAAGRAV WVRENPMG-- VQRGGGARGG TWTPSRPERI AEFRQGEQSP ENSP00000465039/1-833 ISP----HRL LARKNMVSTK IQDTKGCRA- ---------- CCVAEGASSG ENSBTAP00000028180/1-798 ISP----HRL LARKNIVSTK IPDTKGCRA- ---------- CCVAEGTSSG ENSTTRP00000010110/1-737 ISP----HRL LARKNMVSTK IQDTKGCRA- ---------- CCVAEGASSG BACU008339/1-743 ---------- ---KNMVSTK IQDTKGCRA- ---------- CCVAEGTSSG 701 750 bmy_13248T0/1-880 GKDVWPLGGG AGERG----- -YTLTHPYLH SRG--HELRG PLPVWGIGDI ENSP00000465039/1-833 G----PFLCG ALETSVVLLQ WYQPMNKFLL VRQVLFPLPT PLSVFAL--- ENSBTAP00000028180/1-798 G----PFLCG ALETSVVLLQ WYQPMNKFLL VRQVLFPLPT PLPVFAL--- ENSTTRP00000010110/1-737 G----PFLCG ALETSVVLLQ WYQPMNKFLL VRQVLFPLPT PLPVFAL--- BACU008339/1-743 G----PFLCG ALETSVVLLQ WYQPMNKFLL VRQVLFPLPT PLPVFAL--- 751 800 bmy_13248T0/1-880 RGPASVVPAH EQVPAGPGSE LPAVCIGVSP GRPAKSVLFH TVRFGALSCW ENSP00000465039/1-833 ---------- ---LTGPGSE LPAVCIGVSP GRPGKSVLFH TVRFGALSCW ENSBTAP00000028180/1-798 ---------- ---LTGPGSE LPSVCIGVSP GRPAKSVLFH TVRFGALSCW ENSTTRP00000010110/1-737 ---------- ---LTGPGSE LPAVCIGVSP GRPAKSVLFH TVRFGALSCW BACU008339/1-743 ---------- ---LTGPGSE LPAVCIGVSP GRPAKSVLFH TVRFGALSCW 801 850 bmy_13248T0/1-880 LGEMSTEHKG PVQVTQVEED KVMVLMDGSL KLVTPEGAPV RGLRTPEIPM ENSP00000465039/1-833 LGEMSTEHRG PVQVTQVEED MVMVLMDGSV KLVTPEGSPV RGLRTPEIPM ENSBTAP00000028180/1-798 LGEMSTEHKG PVQVTQVEED KVMVLMDGSL KLVTPEGAPV RGLRTPEIPM ENSTTRP00000010110/1-737 LGEMSTEHKG PVQVTQVEED KVMVLMDGSL KLVTPEGAPV RGLRTPEIPM BACU008339/1-743 LGEMSTEHKG PVQVTQVEED KVMVLMDGSL KLVTPEGAPV RGLRTPEIPM 851 900 bmy_13248T0/1-880 TEAVEAVAMV GGRLQAFWKH GVQVWALGSD QLLQELRDPT LTFRLLGSPR ENSP00000465039/1-833 TEAVEAVAMV GGQLQAFWKH GVQVWALGSD QLLQELRDPT LTFRLLGSPR ENSBTAP00000028180/1-798 TEAVEAVAMV GGRLQAFWKH GVQVWALGSD QLLQELRDPT LTFRLLGSPR ENSTTRP00000010110/1-737 TEAVEAVAMV GGRLQAFWKH GVQVWALGSD QLLQELRDPT LTFRLLGSP- BACU008339/1-743 TEAVEAVAMV GGRLQAFWKH GVQVWALGSD QLLQELRDPT LTFRLLGSPR 901 950 bmy_13248T0/1-880 --------PV VVETRPADDP TAPSNLYIQE ---- ENSP00000465039/1-833 LECSGTISPH CNLLLPGSSN SPASASRVAG ITGL ENSBTAP00000028180/1-798 ---------- ---------- ---------- ---- ENSTTRP00000010110/1-737 ---------- ---------- ---------- ---- BACU008339/1-743 --------PV VVETRPADDP TAPSNLYIQE ----