KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:35:12 2014 Check: 00 ..
Name: ENSP00000287380/1-1066 Len: 1118 Check: 2491 Weight: 1.00
Name: ENSBTAP00000028197/1-1063 Len: 1118 Check: 1435 Weight: 1.00
Name: bmy_08361T0/1-1040 Len: 1118 Check: 2453 Weight: 1.00
Name: ENSTTRP00000005062/1-1056 Len: 1118 Check: 7343 Weight: 1.00
//
1 50
ENSP00000287380/1-1066 ---------- ---------- ---------- ---------- MQSTDLGNKE
ENSBTAP00000028197/1-1063 ---------- ---------- ---------- ---------- MQSTDLGSKE
bmy_08361T0/1-1040 LGSGQPRPVL KFPGQEARGL PERRRDRCPL DRWRSRVDCD MQSINLGNKE
ENSTTRP00000005062/1-1056 ---------- ---------- ---------- ---------- MQSINLGNKE
51 100
ENSP00000287380/1-1066 SGKIWHRKPS PATRDGIIVN IIHNTSDYHP KVLRFLNVAF DGTGDCLIAG
ENSBTAP00000028197/1-1063 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDCLIAG
bmy_08361T0/1-1040 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDSLIAG
ENSTTRP00000005062/1-1056 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDSLIAG
101 150
ENSP00000287380/1-1066 DHQGNIYVFD LHGNRFNLVQ RTAQACTALA FNLRRKSEFL VALADYSIKC
ENSBTAP00000028197/1-1063 DHHGNIYVFD LCGNRFNLVQ RTAQACTALA FNLHRKSEFL VALADYSIKC
bmy_08361T0/1-1040 DHQGNIYVFD LYGNRFNLVQ RTSQACTALA FNLHRKSEFL VALADYSIKC
ENSTTRP00000005062/1-1056 DHQGNIYVFD LYGNRFNLVQ RTSQACTALA FNLHRKSEFL VALADYSIKC
151 200
ENSP00000287380/1-1066 FDTVTKELVS WMRGHESSVF SISVHASGKY AITTSSDTAQ LWDLDTFQRK
ENSBTAP00000028197/1-1063 FDTVTKELVS WMRGHESSVF SISVHGSGRY AITTSSDTAQ LWDLDTFQRK
bmy_08361T0/1-1040 FDTVTRELVS WMRGHESSVF SISVHASGRY AITTSSDTAQ LWDLDTFQRK
ENSTTRP00000005062/1-1056 FDTVTKQLVS WMRGHESSVF SISVHASGRY AITTSSDTAQ LWDLDTFQRK
201 250
ENSP00000287380/1-1066 RKLNIRQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL FCKYQLPAPP
ENSBTAP00000028197/1-1063 RKLNILQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL VCKYQLPAPP
bmy_08361T0/1-1040 RKLNILQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL VCKYQLPAPP
ENSTTRP00000005062/1-1056 RKLNILQSVG IQKVFFLPLT NTILSCFKDN SIFAWECDTL VCKYQLPAPP
251 300
ENSP00000287380/1-1066 ESSSILYKVF AVTRDGRILA AGGKSNHLHL WCLEARQLFR IIQMPTKVRA
ENSBTAP00000028197/1-1063 ESSNILYKVF AVTRDGRILA AGGKSNHIHL WCLEAKQLFR IIQMPTKVRA
bmy_08361T0/1-1040 ESSSILYKVF AVT------- ---------- ---------R IIQMPTKVRA
ENSTTRP00000005062/1-1056 ESSSILYKVF AVTRDGQILA AGGKSNHLHL WCLEAKQVFR IIQMPTKVRA
301 350
ENSP00000287380/1-1066 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF INMQTCKLLF EIGSLDEGIS
ENSBTAP00000028197/1-1063 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF INIQTCKLLF EIGSLDDGIS
bmy_08361T0/1-1040 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF VNIQTCKLLF EIGSLDEGIS
ENSTTRP00000005062/1-1056 IRHLEFLPDS FDAGSNQVLG VLCQDGIMRF VNIQTCKLLF ESGSLDEGIS
351 400
ENSP00000287380/1-1066 SSAISPHGRY IASIMENGSL NIYSVQALTQ EINKPPPPLV KVIEDLPKNK
ENSBTAP00000028197/1-1063 SSVISPHGRY IASIMENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKKK
bmy_08361T0/1-1040 SSAISPHGRY IASILENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKKK
ENSTTRP00000005062/1-1056 SSAISPHGRY IASIMENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKRK
401 450
ENSP00000287380/1-1066 LSSSDLKMKV TSGRVQQPAK SRESKMQTRI LKQDLTGDFE S---------
ENSBTAP00000028197/1-1063 GNSGDLKVKV TSGRVRRPAR SRESKIQTRI LKQDLTCGFE K---------
bmy_08361T0/1-1040 VNSGDLKMKV TSGRVQRPAK XRENKIQARI LKQDLTGNFE NKEELKENYR
ENSTTRP00000005062/1-1056 VNSGDLKMKV TSGRVQRPAK SRENKIQARI LKQDLTGNFE N---------
451 500
ENSP00000287380/1-1066 KKNELPDGLN KKRLQILLKG YGEYPTKYRM FIWRSLLQLP ENHTAFSTLI
ENSBTAP00000028197/1-1063 KENELSDGLN KKRLQILLKG YGEFPTKYRM FIWRSLLQLP ENQTAFSNLI
bmy_08361T0/1-1040 KENEFSDGLN KKRLQTLLKS YGEYPTKY-- ---------- ----------
ENSTTRP00000005062/1-1056 KKNEFSDGLN KKRLQILLKG YGEYPMKYRM FIWRSLLQLP ENHTAFSNLI
501 550
ENSP00000287380/1-1066 DKGTHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSVIF SDTPYLPLLA
ENSBTAP00000028197/1-1063 DKGIHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSAIF SDTPYLPLLA
bmy_08361T0/1-1040 ---------- ---------- -------RTL SALAHWSAIF SDTPYLPLLA
ENSTTRP00000005062/1-1056 DKGIHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSSIF SDTPYLPLLA
551 600
ENSP00000287380/1-1066 FPFVKLFQNN QLICFEVIAT LIINWCQHWF EYFPNPPINI LSMIENVLAF
ENSBTAP00000028197/1-1063 FPFVKLFQNN QLICFEVVAT LIINWCQHWF EYFPNPPINI LSMIENVLAF
bmy_08361T0/1-1040 FPFVKLFQNN QLICFEVVAT LLINWCQHWF EYFPNPPINI LSMIENVLAF
ENSTTRP00000005062/1-1056 FPFVKLFQNN QLICFEVVAT LIINWCQHWF EYFPNPPINI LSMIENVLAF
601 650
ENSP00000287380/1-1066 HDKELLQHFI DHDITSQLYA WPLLETVFSE VLTREEWLKL FDNIFSNHPS
ENSBTAP00000028197/1-1063 HDKELLQHFI NHDVTSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS
bmy_08361T0/1-1040 HDKELLQHFI NHDITSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS
ENSTTRP00000005062/1-1056 HDKELLQHFI THDITSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS
651 700
ENSP00000287380/1-1066 FLLMTVVAYN ICSRTPLLSC NLKDDFEFFF HHRNNLDINV VIRQVYHLME
ENSBTAP00000028197/1-1063 FLLMTVVAYN ICSRAPLLNC KRKDDFEYFF HHRNNLDISA VIREAYRLLD
bmy_08361T0/1-1040 FLLMTVVAYN ICSRAPLLNC NLKDDFEFFF HHRNNLDISA VIREVYRLMD
ENSTTRP00000005062/1-1056 FLLMTVVAYN ICSRAPLLNC NLKDDFEYFF HHRNNLDISA VIREVYRLMD
701 750
ENSP00000287380/1-1066 TTPTDIHPDS MLNVFVALTK GQYPVFNQYP KFIVDYQTQE RE--RIRNDE
ENSBTAP00000028197/1-1063 TTPADIHPDS MLDAFVALTK GQYPVFNQYP KFIVDYQTQE RE--RIRNDE
bmy_08361T0/1-1040 TTPADIHPDS MLDVSVALTK GQYPVFNQYP KFIADCQTQE RE--RIRNDE
ENSTTRP00000005062/1-1056 TTPTDIHPDS MLDVFVALTK GQYPVFNQYP KFIVDRQTQE RERIRIRDDE
751 800
ENSP00000287380/1-1066 LDYLRERQTV EDMQAKVDQQ RVEDEAWYQK QELLRKAEET RREMLLQEEE
ENSBTAP00000028197/1-1063 LDYLRERQAV EEMQAEVDQQ RVEDEAWYQK QELLRRAEET RREILLQEEE
bmy_08361T0/1-1040 LDPLRERQVV EDMQAEVDQQ RVEDEGWYQK QELLRKAEET RREMLLREEE
ENSTTRP00000005062/1-1056 LDYLRERQAV EDMQAELDQQ RVEDEAWYQK QEPLRKAEET RRETPLQEEE
801 850
ENSP00000287380/1-1066 KMIQQRQRLA AVKRELKVKE MHLQDAARRR FLKLQQDQQE MELRRLDDEI
ENSBTAP00000028197/1-1063 KMIQQRQRLA AVRRELKVKE MHLQDAARRR LLQLQQDQRE MELRRLDDEI
bmy_08361T0/1-1040 KMTQQRQKLA AMKRELKVKE VHLQDAARRH LLQPQQDQRE MELRRLEDEI
ENSTTRP00000005062/1-1056 MMIQQRQKLA AVKRELKVKE VHLQDAARRR LLQLQQEQRE MELRRLDDEI
851 900
ENSP00000287380/1-1066 GRKVYMRDRE IAATARDLEM RQLELESQKR LYEKNLTENQ EALAKEMRAD
ENSBTAP00000028197/1-1063 ERKVHMRDRE IAATAKDLEM RHLELESQKR LYEKNLSRNQ EAVAKEMKEN
bmy_08361T0/1-1040 ERKVHMRDRE IAATAKDLEM RRLELEPQKR LYEKNLTRNQ EAIAKEMRED
ENSTTRP00000005062/1-1056 ERKVRMRDRD IVATAKDLDV RRLELGS--- ----NLTRNQ EAIAKEMRED
901 950
ENSP00000287380/1-1066 ADAYRRKVDL EEHMFHKLIE AGETQSQKTQ KVIKENLAKA EQACLNTDWQ
ENSBTAP00000028197/1-1063 ADAYRQKVDV EEHMFHRLIG TDQTQNQKIH KLIEENLAKA EQACLNTDWR
bmy_08361T0/1-1040 ADAYKRKVDL EEHMFHRPIG TDQTQNQKTQ KLIEENLAKA EQACLNTDWR
ENSTTRP00000005062/1-1056 ADANKRKVDL EDHMFHRPIG TDQTQNQNTQ KLIEENLAKA EQACLNTDWR
951 1000
ENSP00000287380/1-1066 IQSLHKQKCD DLQRNKCYQE VAKLLRENRR KEIEIINAMV EEEAKKWKEA
ENSBTAP00000028197/1-1063 IQALHKQRCS DLHRNECYQE IAKLLRKNRK KEIEVLNAMM EGEAKKWEEA
bmy_08361T0/1-1040 IQALHKQRCD DLHRNECYQE VAKLLRKNRK KEMEVLNAVM EGEAEKWEEA
ENSTTRP00000005062/1-1056 IQALHKQRCN DLHRNECYQE VAKLLRKNRK KEMEVLNAVM EGEAKKWEEA
1001 1050
ENSP00000287380/1-1066 EGKEFRLRSA KKASALSDAS RKWFLKQEIN AAVEHAENPC HKEEPRFQNE
ENSBTAP00000028197/1-1063 EEKDFHLKSE KKTAALSDAS RRWFLEKEIH D----AQHPC DKVVPKGRDE
bmy_08361T0/1-1040 EEKDFHLKSE KKAAALSDAS RRWFLENEIH DALENAQHPY HK-VPRCQDE
ENSTTRP00000005062/1-1056 EEQDFHLKSE KKAAAPSDAS RRWFLENEIH -----AQHPC HR-VPRCQDE
1051 1100
ENSP00000287380/1-1066 Q-DSSCLPRT SQLNDSSEMD PSTQISLNRR AVEWDTTGQN LIKKVRNLRQ
ENSBTAP00000028197/1-1063 EFASGCLPRA SQLNDISEME SLTQISLNQR KMHWDAMEQD LMERVRNLRQ
bmy_08361T0/1-1040 WVASSCLPRT SQLKDISEME SLTQISLNQR KTRWDTMEWD LMERVRNLRQ
ENSTTRP00000005062/1-1056 WVASGRLPRT SQLKDISEME SLTQISLNQR KTHWDTMEWD LTERVRNLRQ
1101 1150
ENSP00000287380/1-1066 RLTARARHRC QTPHLLAA
ENSBTAP00000028197/1-1063 RLVTQAQNRC QTPHLLAT
bmy_08361T0/1-1040 RLATQARNRC QTPHLLAT
ENSTTRP00000005062/1-1056 RLATQARNRC QTPHLLAT