KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:35:12 2014 Check: 00 .. Name: ENSP00000287380/1-1066 Len: 1118 Check: 2491 Weight: 1.00 Name: ENSBTAP00000028197/1-1063 Len: 1118 Check: 1435 Weight: 1.00 Name: bmy_08361T0/1-1040 Len: 1118 Check: 2453 Weight: 1.00 Name: ENSTTRP00000005062/1-1056 Len: 1118 Check: 7343 Weight: 1.00 // 1 50 ENSP00000287380/1-1066 ---------- ---------- ---------- ---------- MQSTDLGNKE ENSBTAP00000028197/1-1063 ---------- ---------- ---------- ---------- MQSTDLGSKE bmy_08361T0/1-1040 LGSGQPRPVL KFPGQEARGL PERRRDRCPL DRWRSRVDCD MQSINLGNKE ENSTTRP00000005062/1-1056 ---------- ---------- ---------- ---------- MQSINLGNKE 51 100 ENSP00000287380/1-1066 SGKIWHRKPS PATRDGIIVN IIHNTSDYHP KVLRFLNVAF DGTGDCLIAG ENSBTAP00000028197/1-1063 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDCLIAG bmy_08361T0/1-1040 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDSLIAG ENSTTRP00000005062/1-1056 SGKIWHRKPS PATRDGIIVN IIHNTSDYLP KVLRFLNVAF DSSGDSLIAG 101 150 ENSP00000287380/1-1066 DHQGNIYVFD LHGNRFNLVQ RTAQACTALA FNLRRKSEFL VALADYSIKC ENSBTAP00000028197/1-1063 DHHGNIYVFD LCGNRFNLVQ RTAQACTALA FNLHRKSEFL VALADYSIKC bmy_08361T0/1-1040 DHQGNIYVFD LYGNRFNLVQ RTSQACTALA FNLHRKSEFL VALADYSIKC ENSTTRP00000005062/1-1056 DHQGNIYVFD LYGNRFNLVQ RTSQACTALA FNLHRKSEFL VALADYSIKC 151 200 ENSP00000287380/1-1066 FDTVTKELVS WMRGHESSVF SISVHASGKY AITTSSDTAQ LWDLDTFQRK ENSBTAP00000028197/1-1063 FDTVTKELVS WMRGHESSVF SISVHGSGRY AITTSSDTAQ LWDLDTFQRK bmy_08361T0/1-1040 FDTVTRELVS WMRGHESSVF SISVHASGRY AITTSSDTAQ LWDLDTFQRK ENSTTRP00000005062/1-1056 FDTVTKQLVS WMRGHESSVF SISVHASGRY AITTSSDTAQ LWDLDTFQRK 201 250 ENSP00000287380/1-1066 RKLNIRQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL FCKYQLPAPP ENSBTAP00000028197/1-1063 RKLNILQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL VCKYQLPAPP bmy_08361T0/1-1040 RKLNILQSVG IQKVFFLPLS NTILSCFKDN SIFAWECDTL VCKYQLPAPP ENSTTRP00000005062/1-1056 RKLNILQSVG IQKVFFLPLT NTILSCFKDN SIFAWECDTL VCKYQLPAPP 251 300 ENSP00000287380/1-1066 ESSSILYKVF AVTRDGRILA AGGKSNHLHL WCLEARQLFR IIQMPTKVRA ENSBTAP00000028197/1-1063 ESSNILYKVF AVTRDGRILA AGGKSNHIHL WCLEAKQLFR IIQMPTKVRA bmy_08361T0/1-1040 ESSSILYKVF AVT------- ---------- ---------R IIQMPTKVRA ENSTTRP00000005062/1-1056 ESSSILYKVF AVTRDGQILA AGGKSNHLHL WCLEAKQVFR IIQMPTKVRA 301 350 ENSP00000287380/1-1066 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF INMQTCKLLF EIGSLDEGIS ENSBTAP00000028197/1-1063 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF INIQTCKLLF EIGSLDDGIS bmy_08361T0/1-1040 IRHLEFLPDS FDAGSNQVLG VLSQDGIMRF VNIQTCKLLF EIGSLDEGIS ENSTTRP00000005062/1-1056 IRHLEFLPDS FDAGSNQVLG VLCQDGIMRF VNIQTCKLLF ESGSLDEGIS 351 400 ENSP00000287380/1-1066 SSAISPHGRY IASIMENGSL NIYSVQALTQ EINKPPPPLV KVIEDLPKNK ENSBTAP00000028197/1-1063 SSVISPHGRY IASIMENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKKK bmy_08361T0/1-1040 SSAISPHGRY IASILENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKKK ENSTTRP00000005062/1-1056 SSAISPHGRY IASIMENGSL NIYSVQTLTK EINKPPPPLV KVIEDLPKRK 401 450 ENSP00000287380/1-1066 LSSSDLKMKV TSGRVQQPAK SRESKMQTRI LKQDLTGDFE S--------- ENSBTAP00000028197/1-1063 GNSGDLKVKV TSGRVRRPAR SRESKIQTRI LKQDLTCGFE K--------- bmy_08361T0/1-1040 VNSGDLKMKV TSGRVQRPAK XRENKIQARI LKQDLTGNFE NKEELKENYR ENSTTRP00000005062/1-1056 VNSGDLKMKV TSGRVQRPAK SRENKIQARI LKQDLTGNFE N--------- 451 500 ENSP00000287380/1-1066 KKNELPDGLN KKRLQILLKG YGEYPTKYRM FIWRSLLQLP ENHTAFSTLI ENSBTAP00000028197/1-1063 KENELSDGLN KKRLQILLKG YGEFPTKYRM FIWRSLLQLP ENQTAFSNLI bmy_08361T0/1-1040 KENEFSDGLN KKRLQTLLKS YGEYPTKY-- ---------- ---------- ENSTTRP00000005062/1-1056 KKNEFSDGLN KKRLQILLKG YGEYPMKYRM FIWRSLLQLP ENHTAFSNLI 501 550 ENSP00000287380/1-1066 DKGTHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSVIF SDTPYLPLLA ENSBTAP00000028197/1-1063 DKGIHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSAIF SDTPYLPLLA bmy_08361T0/1-1040 ---------- ---------- -------RTL SALAHWSAIF SDTPYLPLLA ENSTTRP00000005062/1-1056 DKGIHVAFLN LQKKYPIKSR KLLRVLQRTL SALAHWSSIF SDTPYLPLLA 551 600 ENSP00000287380/1-1066 FPFVKLFQNN QLICFEVIAT LIINWCQHWF EYFPNPPINI LSMIENVLAF ENSBTAP00000028197/1-1063 FPFVKLFQNN QLICFEVVAT LIINWCQHWF EYFPNPPINI LSMIENVLAF bmy_08361T0/1-1040 FPFVKLFQNN QLICFEVVAT LLINWCQHWF EYFPNPPINI LSMIENVLAF ENSTTRP00000005062/1-1056 FPFVKLFQNN QLICFEVVAT LIINWCQHWF EYFPNPPINI LSMIENVLAF 601 650 ENSP00000287380/1-1066 HDKELLQHFI DHDITSQLYA WPLLETVFSE VLTREEWLKL FDNIFSNHPS ENSBTAP00000028197/1-1063 HDKELLQHFI NHDVTSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS bmy_08361T0/1-1040 HDKELLQHFI NHDITSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS ENSTTRP00000005062/1-1056 HDKELLQHFI THDITSQLYA WPLLETVFSE VLTREEWLKL FDNVFSNHPS 651 700 ENSP00000287380/1-1066 FLLMTVVAYN ICSRTPLLSC NLKDDFEFFF HHRNNLDINV VIRQVYHLME ENSBTAP00000028197/1-1063 FLLMTVVAYN ICSRAPLLNC KRKDDFEYFF HHRNNLDISA VIREAYRLLD bmy_08361T0/1-1040 FLLMTVVAYN ICSRAPLLNC NLKDDFEFFF HHRNNLDISA VIREVYRLMD ENSTTRP00000005062/1-1056 FLLMTVVAYN ICSRAPLLNC NLKDDFEYFF HHRNNLDISA VIREVYRLMD 701 750 ENSP00000287380/1-1066 TTPTDIHPDS MLNVFVALTK GQYPVFNQYP KFIVDYQTQE RE--RIRNDE ENSBTAP00000028197/1-1063 TTPADIHPDS MLDAFVALTK GQYPVFNQYP KFIVDYQTQE RE--RIRNDE bmy_08361T0/1-1040 TTPADIHPDS MLDVSVALTK GQYPVFNQYP KFIADCQTQE RE--RIRNDE ENSTTRP00000005062/1-1056 TTPTDIHPDS MLDVFVALTK GQYPVFNQYP KFIVDRQTQE RERIRIRDDE 751 800 ENSP00000287380/1-1066 LDYLRERQTV EDMQAKVDQQ RVEDEAWYQK QELLRKAEET RREMLLQEEE ENSBTAP00000028197/1-1063 LDYLRERQAV EEMQAEVDQQ RVEDEAWYQK QELLRRAEET RREILLQEEE bmy_08361T0/1-1040 LDPLRERQVV EDMQAEVDQQ RVEDEGWYQK QELLRKAEET RREMLLREEE ENSTTRP00000005062/1-1056 LDYLRERQAV EDMQAELDQQ RVEDEAWYQK QEPLRKAEET RRETPLQEEE 801 850 ENSP00000287380/1-1066 KMIQQRQRLA AVKRELKVKE MHLQDAARRR FLKLQQDQQE MELRRLDDEI ENSBTAP00000028197/1-1063 KMIQQRQRLA AVRRELKVKE MHLQDAARRR LLQLQQDQRE MELRRLDDEI bmy_08361T0/1-1040 KMTQQRQKLA AMKRELKVKE VHLQDAARRH LLQPQQDQRE MELRRLEDEI ENSTTRP00000005062/1-1056 MMIQQRQKLA AVKRELKVKE VHLQDAARRR LLQLQQEQRE MELRRLDDEI 851 900 ENSP00000287380/1-1066 GRKVYMRDRE IAATARDLEM RQLELESQKR LYEKNLTENQ EALAKEMRAD ENSBTAP00000028197/1-1063 ERKVHMRDRE IAATAKDLEM RHLELESQKR LYEKNLSRNQ EAVAKEMKEN bmy_08361T0/1-1040 ERKVHMRDRE IAATAKDLEM RRLELEPQKR LYEKNLTRNQ EAIAKEMRED ENSTTRP00000005062/1-1056 ERKVRMRDRD IVATAKDLDV RRLELGS--- ----NLTRNQ EAIAKEMRED 901 950 ENSP00000287380/1-1066 ADAYRRKVDL EEHMFHKLIE AGETQSQKTQ KVIKENLAKA EQACLNTDWQ ENSBTAP00000028197/1-1063 ADAYRQKVDV EEHMFHRLIG TDQTQNQKIH KLIEENLAKA EQACLNTDWR bmy_08361T0/1-1040 ADAYKRKVDL EEHMFHRPIG TDQTQNQKTQ KLIEENLAKA EQACLNTDWR ENSTTRP00000005062/1-1056 ADANKRKVDL EDHMFHRPIG TDQTQNQNTQ KLIEENLAKA EQACLNTDWR 951 1000 ENSP00000287380/1-1066 IQSLHKQKCD DLQRNKCYQE VAKLLRENRR KEIEIINAMV EEEAKKWKEA ENSBTAP00000028197/1-1063 IQALHKQRCS DLHRNECYQE IAKLLRKNRK KEIEVLNAMM EGEAKKWEEA bmy_08361T0/1-1040 IQALHKQRCD DLHRNECYQE VAKLLRKNRK KEMEVLNAVM EGEAEKWEEA ENSTTRP00000005062/1-1056 IQALHKQRCN DLHRNECYQE VAKLLRKNRK KEMEVLNAVM EGEAKKWEEA 1001 1050 ENSP00000287380/1-1066 EGKEFRLRSA KKASALSDAS RKWFLKQEIN AAVEHAENPC HKEEPRFQNE ENSBTAP00000028197/1-1063 EEKDFHLKSE KKTAALSDAS RRWFLEKEIH D----AQHPC DKVVPKGRDE bmy_08361T0/1-1040 EEKDFHLKSE KKAAALSDAS RRWFLENEIH DALENAQHPY HK-VPRCQDE ENSTTRP00000005062/1-1056 EEQDFHLKSE KKAAAPSDAS RRWFLENEIH -----AQHPC HR-VPRCQDE 1051 1100 ENSP00000287380/1-1066 Q-DSSCLPRT SQLNDSSEMD PSTQISLNRR AVEWDTTGQN LIKKVRNLRQ ENSBTAP00000028197/1-1063 EFASGCLPRA SQLNDISEME SLTQISLNQR KMHWDAMEQD LMERVRNLRQ bmy_08361T0/1-1040 WVASSCLPRT SQLKDISEME SLTQISLNQR KTRWDTMEWD LMERVRNLRQ ENSTTRP00000005062/1-1056 WVASGRLPRT SQLKDISEME SLTQISLNQR KTHWDTMEWD LTERVRNLRQ 1101 1150 ENSP00000287380/1-1066 RLTARARHRC QTPHLLAA ENSBTAP00000028197/1-1063 RLVTQAQNRC QTPHLLAT bmy_08361T0/1-1040 RLATQARNRC QTPHLLAT ENSTTRP00000005062/1-1056 RLATQARNRC QTPHLLAT