KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:14 2014 Check: 00 .. Name: ENSP00000384115/1-1274 Len: 1508 Check: 6253 Weight: 1.00 Name: ENSBTAP00000028212/1-1278 Len: 1508 Check: 472 Weight: 1.00 Name: bmy_01013T0/1-895 Len: 1508 Check: 6782 Weight: 1.00 Name: ENSTTRP00000013983/1-1278 Len: 1508 Check: 2079 Weight: 1.00 Name: BACU013418/1-1405 Len: 1508 Check: 7970 Weight: 1.00 // 1 50 ENSP00000384115/1-1274 MAVRQAATAG TPGPRREEEA ALLFERAHYR HDPRWLLPVT PRLCLACALE ENSBTAP00000028212/1-1278 MAVREAA-AG LSGPGRDEEA ALLFENAHYR HDSRWLLPVS PRCCLACALE bmy_01013T0/1-895 MAVRDPA-AG LPGPGRDEEA ALLFERAHYR HDPRWLLPMS PRLCLACALE ENSTTRP00000013983/1-1278 MSVREPA-AG LPRPGRDEEA ALLFERAHYR HDPRWLLPVP PRLCLACALE BACU013418/1-1405 MAVRESA-AG LPGPGRDEEA ALLFERAHYR HDPRWLLPMS PRLCLACALE 51 100 ENSP00000384115/1-1274 LLPDPGVSLV RKKHMLSCFQ DALVRHTSLV TQLVSQDQRV CIHFISVLFG ENSBTAP00000028212/1-1278 LLPEPGVSLV RKKHVLSGFR DALMKHASLV VQLVAQDQRV CIHFVSMLFG bmy_01013T0/1-895 LLPEPSVSLV RKKHVLSGFR DALMRHASLV MQLVAQDQRV CIHFISMLFG ENSTTRP00000013983/1-1278 LLPEPSVSLV RKKHVLSGFR DALMRHASLV MQLVAQDQRV CIHFISMLFG BACU013418/1-1405 LLPEPSVSLV RKKHVLSGFR DALMRHASLV MQLVAQDQRV CIHFISTLFG 101 150 ENSP00000384115/1-1274 LLCSMEDGSV TDLCIEVLIQ ITTQLKLEQT IRCLLDECHK --ELCNMPSM ENSBTAP00000028212/1-1278 LLCNVEDGSI TDLCIEVLIQ LTTQLKLEQT IHCLLDECHK --ELCSMPSM bmy_01013T0/1-895 ---EIERKTW HEFCMY---- ---------- --TFPYPAYN SAELCNMPSM ENSTTRP00000013983/1-1278 LLCNVEDGSI TDLCIEVLIQ LTTQLKLEQT IHCLLYECHK --ELCNMPSM BACU013418/1-1405 LLCNVEDGSI TDLCIEVLIQ LTTQLKLEQT IHCLLDECHK --ELCNMPSM 151 200 ENSP00000384115/1-1274 RGSLATLTLL GKLVDAIPAL ADELVMEHGN LMEHLLRGLV YPSEGIQASV ENSBTAP00000028212/1-1278 RGSLATLTLL GKLVDAVPAL ADKLVMEHGD LMEHLLRGLV YPNEGVQASV bmy_01013T0/1-895 RGSLATLTLL GKLVDAIPAL ADKLVMEHSD LMEHLLRGLV YPSEGVQASV ENSTTRP00000013983/1-1278 RGSLATLTLL GKLVDAIPAL ADKLVMEHSD LMEHLLRGLV YPSEGVQASV BACU013418/1-1405 RGSLATLTLL GKLVDAIPAL ADKLVMEHSD LMEHLLRGLV YPSEGVQASV 201 250 ENSP00000384115/1-1274 CYLYGKLYSS PVAAEMLSGH FREKLFPLFL SILDGAQTKE LQINCLGLL- ENSBTAP00000028212/1-1278 CYLYGKLYSS PVAAEMLLGH FREKLCPLFL STMDGAQTKE LQINCLGKMW bmy_01013T0/1-895 CYLYGKLYSS PVAAEMLLGH FREKLCPLFL STMDGAQTKE LKINCLGLL- ENSTTRP00000013983/1-1278 CYLYGKLYSS PVAAEMLLGH FREKLCPLFL STMDGAQTKE LKINCLGLL- BACU013418/1-1405 CYLYGKLYSS PVAAEMLLGH FREKLCPLFL STMDGAQTKE LKINCLGLL- 251 300 ENSP00000384115/1-1274 -----RQLLK YDLFVSMIMN QDGLGESAKN IEGSSGNTSL PLVLKKLLLS ENSBTAP00000028212/1-1278 DWREKRKLLR FFFFFLRILG QELCFEQXES VEGPPGETPL PLVLKKLLLS bmy_01013T0/1-895 -----RQLLK YDLFVSMIMN KSALVESTES VEGPPGETSL PLVLKKLLLS ENSTTRP00000013983/1-1278 -----RQLLK YDLFVSMIMN KSALVESTES VEGPPGETSL PLVLKKLLLS BACU013418/1-1405 -----RQLLK YDLFVSMIMN KSVLVESTES VEGPPGETSL PLVLKKLLLS 301 350 ENSP00000384115/1-1274 RDETLQVASA HCITAVLVHS PAKHASAFIH ADIPEFLFEH LSSSSEVLVW ENSBTAP00000028212/1-1278 RDETLQVASA QCITAVLVHS PAKHALAFIH ADIPEFLFEH LSSSSEVLVW bmy_01013T0/1-895 RDETLQVASA HCITAVLVHS PAKHAPAFIH ADIPEFLFEH LSSSSEVLVW ENSTTRP00000013983/1-1278 RDETLQVASA HCITAVLVHS PAKHAPAFIH ADIPEFLFEH LSSSSEVLVW BACU013418/1-1405 RDETLQVASA HCITAVLLHS PAKHAPAFIH ADIPEFLFEH LSSSSEVLVW 351 400 ENSP00000384115/1-1274 SSCNCLTLLV EEPLFFSKCH TVYGIEAVVR SLQGSLKMNN IELHKQGLLL ENSBTAP00000028212/1-1278 SCYNCLILLA EEPLFFSKCH TVYGIESVVR SLQGNLRMNN TELHKQGLLL bmy_01013T0/1-895 SSYNCLILLA EEPLFFSKCH TVYGIESVVR SLQGILRMNN TELHKQGLLL ENSTTRP00000013983/1-1278 SSYNCLILLA EEPLFFSKCH TVYGIESVVR SLQGILRLNN TELHKQGLLL BACU013418/1-1405 SSYNCLILLA EEPLFFSKCH TVYGIESVVR SLQGILRMNN TELHKQGLLL 401 450 ENSP00000384115/1-1274 FAEILTRQPE EIKLFTSSAM CRDAGRALQE AVSSPVLEVA AEALKATSAF ENSBTAP00000028212/1-1278 FAEILTRQPE EIKLFTSSAM CRDAGRALRE AVSSPVLEVA AEALKAISAF bmy_01013T0/1-895 FAQILTRQPE EIRLFTSSAM CRDAGRALQE AVNSPVLEVA AEAVKAISAF ENSTTRP00000013983/1-1278 FTQILTRXXX XXXXXXXXXX CRDAGRALQE AVNSPVLEVA AEAVKAISAF BACU013418/1-1405 FAQILTRQPE EIRLFTSSAM CRDAGRALQE AVNSPVLEVA AEAVKAISAF 451 500 ENSP00000384115/1-1274 LRKDHQSTPP VQYGELQALL EAMLNRCAEF SQTLLSRRPL GHASSRDSEK ENSBTAP00000028212/1-1278 LRKDHQSALP VLYKELQGLV KAMLSRCADL SQTPLNWRPL GHASNRNSER bmy_01013T0/1-895 LRKDHQSALP VLYKELQALL KAMLSRCADF SQTPLNWRPL GHASSRDSEK ENSTTRP00000013983/1-1278 LRKDHQSALP VLYKELQALL KAMLSRCADF SQIPLNWRPL GHASSRDSEK BACU013418/1-1405 LRKDHQSALP VLYKELQALL KAMLSRCADF SQTPLNWRPL GHASSRDSEK 501 550 ENSP00000384115/1-1274 AILQRGKFLL STLEGFRSAC RLAIEFQSEP SAQENPFTAP SAKKEDTLEA ENSBTAP00000028212/1-1278 AILRRGKFLL NTLEGFRNAC RLAMEFQREP SAQENPFTAP SAEKEDTLEA bmy_01013T0/1-895 AILRRGRFLL STLEGFRNAC RLAVEFQNEP SAQENPFTAP SAEKEDTLEA ENSTTRP00000013983/1-1278 TILRRGSFLL STLEGFRNAC RLAVEFQSEP SAQENPFTAP SAEKEDTLEA BACU013418/1-1405 AILRRGRFLL STLEGFRNAC RLAVEFQNEP SAQENPFTAP SAEKEDTLEA 551 600 ENSP00000384115/1-1274 FSEFLLSACD SLCIPMVMRH LEQTTHPALM EVFLSILHNL FVIVPHMKEK ENSBTAP00000028212/1-1278 FSEFLLSACD SLCIPMVMRY WEQATHPAVM EVFLSVLHSL FVIVPHMKEK bmy_01013T0/1-895 FSEFLLSACD SLCIPMVMRY SEQATHPALM EVFLSVLHSL FVIVPHMKEK ENSTTRP00000013983/1-1278 FSEFLLSACD SLCIPMVMRY SEQATHPALM EVFLSVLHSL FVIVPHMKEE BACU013418/1-1405 FSEFLLSACD SLCIPMVMRY SEQATHPALM EVFLSVLHSL FVIVPHMKEK 601 650 ENSP00000384115/1-1274 FSKKLASSSF IRLTLELKAR FCSGLSHSAL NQVCSNFLYY MCLNLLSAPE ENSBTAP00000028212/1-1278 FSKKLAASSF IRLALELKAR FCSGLSHSAL NQVCSSFLYY MCISLFSAPE bmy_01013T0/1-895 FSKKLAASSF IQLTLELKAR FCSGLSHSAL NQVCSSFLYY MCINLLSAPE ENSTTRP00000013983/1-1278 FSKKLAASSF IQLTLELKAR FCSGLSHSAL NQVCSSFLYY MCINLLSAPE BACU013418/1-1405 FSKKLAASSF IQLTLELKAR FCSGLSHSAL NQVCSSFLYY MCINLLSAPE 651 700 ENSP00000384115/1-1274 KTGPPSKEEL SAVSELLQHG LPQISSRSPE SLAFLSDRQY MEGAARQRQY ENSBTAP00000028212/1-1278 KTGPPSQEEL CAVSELLQHG LPQISSRGPE SLALLSDRQY VEEAARQRQY bmy_01013T0/1-895 KTGPPSQEEL SAVSELLQHG LPQISSRSPE SLAFLSDRQY VEGATRQRQY ENSTTRP00000013983/1-1278 KTGPPSQEEL SAVSELLQHG LPQISSRSPE SLAFLSDRQY VEGATRQRQY BACU013418/1-1405 KTGPPSQEEL SAVSELLQRG LPQISSRSPE SLAFLSDRQY VEGATRQRQY 701 750 ENSP00000384115/1-1274 CILLLFYLAY IHE------D RFVSEAELFE AVQSFLLSLQ DQGERPPLVV ENSBTAP00000028212/1-1278 CILLLFYLAY IHE------D RFVSKTKLFM AVQSFLLSLQ DQGERPPLVV bmy_01013T0/1-895 CILLLFYLAY IHE------D RFVSEAELFV AVRSFLLSLQ DQGECPPLVV ENSTTRP00000013983/1-1278 CILLLFYL-Y IHEDRLSLVD RFVSEAELFM AVRSFLLSLQ DQGECPPLVV BACU013418/1-1405 CILLLFYLAY VHE------D RFVSEAELFM AVRSFLLSLQ DQGERPPLVV 751 800 ENSP00000384115/1-1274 FKASIYLLAI CQDKDNTLRE TMVSAIRKFL EGIPDLQLVY THHPLLLRFF ENSBTAP00000028212/1-1278 FRASIYLLAI CQDKDDALDE AVVGAIRKFL EDTPDLHRVY THHPLLLRLF bmy_01013T0/1-895 FRASIYLLAI CQNKDSALDE AVVGAIRKLL EGILDLHLVY THHPLVLRLF ENSTTRP00000013983/1-1278 FRASIYLLAI CQDKDGALDE AVVGAIRKLL EGIPDLHLVY THHPLLLRLF BACU013418/1-1405 FRASIYLLAI CQDKDGALDE AVVDAIRKLL EGILDLHLVY THHPLVLRLF 801 850 ENSP00000384115/1-1274 LLYPELMSRY GHRVLELWFF WEESSYEELD DVTSAGQPAL PASLVVLFQL ENSBTAP00000028212/1-1278 LLHPELMRRF GHRVLELWFS WEESSYEELD GVPSAGQPTL PASVAALFHI bmy_01013T0/1-895 LLYPELMSRF GHRVLELWFS WEESICEELD DVASAGQPTL PASLAALFHV ENSTTRP00000013983/1-1278 LLYPELMSRF GHRVLELWFS WEESICEELD DVASAGQPTL PASLAALFHV BACU013418/1-1405 LLYPELMSRF GHRVLELWFS WEESICEELD NVASAGQPTL PASLAALFHV 851 900 ENSP00000384115/1-1274 LRSIPSILLI LLDLIYSSPV DTAHKVLISL RTFLRRNEDI QVGGLIRGHF ENSBTAP00000028212/1-1278 FRSSPSILLI LLDLICSSPM DIARKVLIVL KTFLRRNEDV QVGGLIRGHF bmy_01013T0/1-895 LRSSPSTLLI LLDLIYSSPV DTARKVLIVL RTFLRRNEDV QVGGLIRGHF ENSTTRP00000013983/1-1278 LRSSPSTLLI LLDLIYSSPV DTARKVLIVL RTFLRRNEDV QVGGLIRGHF BACU013418/1-1405 LRSSPSTLLI LLDLIYSSPV DTARKVLIVL RTFLGRKEDV QVGGLIRGHF 901 950 ENSP00000384115/1-1274 LLILQRLLVE HGASPSGASG NLPLLLSLLS LMQLRNVSEQ ELDSVAMKLL ENSBTAP00000028212/1-1278 LMILQHLLVE HGSSPSGASG NLPLLLNLLS LVQLRNESEQ ELDSMAMKLL bmy_01013T0/1-895 LLILQHLLVE HGSSPSG--- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 LLILQHLLVE HGSSPSEASG NLPLLLSLLS LVQLRNESEQ ELDSMAMKLL BACU013418/1-1405 LLILQHLLVE HGSSPSGASG NLPLLLSLLS LVQLRNESEQ ELDSMAMKLL 951 1000 ENSP00000384115/1-1274 HQVSKLCGKC SPTDVDILQP SFNFLYWSLH QTTPSSQKRA AAVLLSSTGL ENSBTAP00000028212/1-1278 HQVSKLCGTC SPADSDILQP SFNFLYCSLH QTTLGSQRRA AAVLLSSTAL bmy_01013T0/1-895 -------GQS AAAG------ ---------- ---------- ---------- ENSTTRP00000013983/1-1278 HQVSKLCGKC SPTDTDILQP SFNFLYWSLH QTTLGSQKRA AAVLLSSTAL BACU013418/1-1405 HQVSKLCGKC SPTDTDILQP SFNFLYWSLH QTTLGSQKRA AAVLLSSTAL 1001 1050 ENSP00000384115/1-1274 MELLEKMLAL TLAKADSPRT ALLCSAWLLT ASFSAQQHKG SLQVHQTLSV ENSBTAP00000028212/1-1278 IELLEKMLAL TWAEEGSPRT GLLCSAWLLT ASFSAQQHKG SLQVHQTLSV bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 IELLEKTLAL TWAEEGSPRT ELLCSAWLLT ASFSAQQHDG NLQVHQTLSV BACU013418/1-1405 IELLEKTLAL TWAEEGSPRT ELLCSAWLLT ASFSAQQHDG NLQVHQTLSV 1051 1100 ENSP00000384115/1-1274 EMDQVLKALS FPKKKAALLS AAILCFLRTA LRQSFSSALV ALVPSGAQPL ENSBTAP00000028212/1-1278 ELDQVLKALS VPKKKAALLS AAILRFLRTA LQQNFSSALV ALRPSGAQSP bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ELDQVLKALS FPKKKAALLS AAILRFLRTA LQQSFSSALV ALLPSGTQPP BACU013418/1-1405 ELDQVLKALS FPKKKAALL- ---------- ---------- ----SGAQPP 1101 1150 ENSP00000384115/1-1274 PATKDTVLAP LRMSQVRSLV IGLQNLLVQK DPLLSQACVG CLEALLDYLD ENSBTAP00000028212/1-1278 PAPEDTVLAP LGTSQVLSLV IGLQNLLVQK DPLLSHACVG CLEALLDYVH bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 PAPEDTVLAP LGTSQVLSLV IGLQNLLVQK DPLLSHACVG CLEALLDYLH BACU013418/1-1405 PAPEDTVLAP LGTLQVLSLV IGLQNLLVQ- ---------- ---------- 1151 1200 ENSP00000384115/1-1274 ARSPDIALHV ASQPWNRFLL FTLLDAGENS FLRPEILRLM TLFMRYRSSS ENSBTAP00000028212/1-1278 ARSPDVALHV ACQPWNRFLM FTLLEAGENS FLKPEILRLM TLFVRFRSSS bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ARSPDVALHV ASQPWNRFLL FTLLDAGENS FLRAEILRLM TLFVRFRSSS BACU013418/1-1405 ---------- ---------- ---------- ---------- --FVRFRSSS 1201 1250 ENSP00000384115/1-1274 VLSHEEVGDV LQGVALADLS TLSNTTLQAL HGFFQQLQSM GHLADHSMAQ ENSBTAP00000028212/1-1278 ILS-QEVGHV LQGAASTDLS TLPGSTLQAL HGFFLQVQSM GLLTDHSMAQ bmy_01013T0/1-895 ---------- ---------- ---------- -GMY------ ---------- ENSTTRP00000013983/1-1278 ILSREEVGHV LQGAALADLS TLSSTTLQAL RGFFLQVQSM GLLADHSMAQ BACU013418/1-1405 ILSHEEVGHV LQGAALADLS TLSSTTLQAL RGFFLQVQSM GLLADHRMAQ 1251 1300 ENSP00000384115/1-1274 TLQASLEGLP PSTSSGQPPL QDMLC----- ---------- ---LGGVAVS ENSBTAP00000028212/1-1278 TLQASLESLS PRASLAQPPL QDMLC----- ---------- ---LGEVSVS bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 TLQASLEGLS PRASTAQPPL QDMIC----- ---------- ---LGGVAVS BACU013418/1-1405 TLQASLEGLS PRASTAQPPL QDMISRVLDM DLLQFLAFLS VLLLSGTGVT 1301 1350 ENSP00000384115/1-1274 ---------- ---------- ---------- -LSHIRN--- ---------- ENSBTAP00000028212/1-1278 ---------- ---------- ---------- -LSHIRD--- ---------- bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ---------- ---------- ---------- -LSHIRD--- ---------- BACU013418/1-1405 DTLRTSLDPS LEIYKKMFEV KRREQLLALK NLAQLNDVHQ QYKILDVMLK 1351 1400 ENSP00000384115/1-1274 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028212/1-1278 ---------- ---------- ---------- ---------- ---------- bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ---------- ---------- ---------- ---------- ---------- BACU013418/1-1405 GLFKVLEDSR TVLTAADVLP DGPFPQDEKL KDAFSQVVEN TAFFGDVVLR 1401 1450 ENSP00000384115/1-1274 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028212/1-1278 ---------- ---------- ---------- ---------- ---------- bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ---------- ---------- ---------- ---------- ---------- BACU013418/1-1405 FPRIVHHCFD HNSNWNLLIR WGISFCNQSG VFDQGPHSPI LSLMAQELGI 1451 1500 ENSP00000384115/1-1274 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028212/1-1278 ---------- ---------- ---------- ---------- ---------- bmy_01013T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013983/1-1278 ---------- ---------- ---------- ---------- ---------- BACU013418/1-1405 SEKDSDFQNP FKVDHTEFIT STDPFQKALR GEEKRRKKEE KRKEIRKGPR 1501 1550 ENSP00000384115/1-1274 -------- ENSBTAP00000028212/1-1278 -------- bmy_01013T0/1-895 -------- ENSTTRP00000013983/1-1278 -------- BACU013418/1-1405 ISRSQSEL