KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:15 2014 Check: 00 .. Name: ENSTTRP00000010983/1-820 Len: 853 Check: 2543 Weight: 1.00 Name: bmy_10441T0/1-828 Len: 853 Check: 9316 Weight: 1.00 Name: ENSP00000295321/1-819 Len: 853 Check: 1547 Weight: 1.00 Name: BACU009910/1-470 Len: 853 Check: 8143 Weight: 1.00 Name: ENSBTAP00000028213/1-822 Len: 853 Check: 720 Weight: 1.00 // 1 50 ENSTTRP00000010983/1-820 MDSEYYSGDQ S-DDGGATPV QDERDSGSDV EDDVNEQHSG SDTGSVERHS bmy_10441T0/1-828 MDSEYYSGDQ S-DDGGATPV QDERDSGSDV EEDVNEQHSG SDPGSVERHS ENSP00000295321/1-819 MDSEYYSGDQ S-DDGGATPV QDERDSGSDG EDDVNEQHSG SDTGSVERHS BACU009910/1-470 ---------- -------MPM QTGRGS---- ---------- ---------- ENSBTAP00000028213/1-822 MDSEYYSGDQ SADDGGATPV QDERDSGSDV EDDVNEQHSG SDTGSVERHS 51 100 ENSTTRP00000010983/1-820 ENERSDREDG LNKRHHVTDS ENDDPSNLNA SDSESEELQR QKDSDSEFEG bmy_10441T0/1-828 ENEPSDREDG LNKRHHVTDS ENDDPSNLNA SDSESEELQR QKDSDSESEE ENSP00000295321/1-819 ENETSDREDG LPKGHHVTDS ENDEPLNLNA SDSESEELHR QKDSDSESEE BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 ENEPSDREDS LNKRHQVTDS DNDDPSNLNA SDSESEELQR QKDSDSESEE 101 150 ENSTTRP00000010983/1-820 HAEPRASDSE NEDANHHGSD SENEEPRKLP VSDSENEELL NGHASDSENE bmy_10441T0/1-828 HAEPPASDSE NEGVSPHGSD SENEGARKLP VSDSENEQLL NGHASDSENE ENSP00000295321/1-819 RAEPPASDSE NEDVNQHGSD SESEETRKLP GSDSENEELL NGHASDSENE BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 HAEPPASDSE NEDVNHHGSD SESEETRKLP ASDSENEELL NGHASDSENE 151 200 ENSTTRP00000010983/1-820 DVRKPPASDS EVEELPKSPA SYSETEDALK PQVSDSESEE PPRHPASDSE bmy_10441T0/1-828 DVRKPPASDS EVEELPKSPA SYSEAEDALK PQVSDSESEE PPRHQASDSE ENSP00000295321/1-819 DVGKHPASDS EIEELQKSPA SDSETEDALK PQISDSESEE PPRHQASDSE BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 DVRKPPASDS EVEELPKSPA SDSETEGAPK PQASDSESEE PPRNQASDSE 201 250 ENSTTRP00000010983/1-820 NEALPKPRVS DSESEELPKP RISDSE---- ---------- ---------- bmy_10441T0/1-828 NEELPKPRIS DSESEELPKP RISDSESEGP QRTQASDSEN EELPKPRISD ENSP00000295321/1-819 NEEPPKPRMS DSESEELPKP QVSDSE---- ---------- ---------- BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 NEELPKPRIS DSESEELPKP RISDSE---- ---------- ---------- 251 300 ENSTTRP00000010983/1-820 --------SE DPPRQQASDS ENEELPKPRI SDSESEDPPR HQASDSENEE bmy_10441T0/1-828 SPRISDSESE GPQRTQASDS ENEELPKPRI SDSESEDPPR HQASDSETEE ENSP00000295321/1-819 --------SE EPPRHQASDS ENEELPKPRI SDSESEDPPR HQASDSENEE BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 -------KSE DPPRQQASDS ENEELPKPRI SDSESEDPPR HQASDSENEE 301 350 ENSTTRP00000010983/1-820 LPKPRISDSE SEDPPRHQAS DSENEELPKP QASDSESEEP QKGPASDSEA bmy_10441T0/1-828 LPKPRISDSE SEDPPRHQAS DSETEELPKP QVSDSESEEP QKGPASDSEA ENSP00000295321/1-819 LPKPRISDSE SEDPPRNQAS DSENEELPKP RVSDSESEGP QKGPASDSET BACU009910/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028213/1-822 LPKPRISDSE SEDPPRNQAS DSENEELPKP RVSDSESEEP QKGPASDSET 351 400 ENSTTRP00000010983/1-820 EAAPRHRQKP ESDEDSDGEN KREDTEMQAD PFHSDAHVDR KRFNSSDSEE bmy_10441T0/1-828 EDAARHKQKP ESDEDSDGES KREDTEVQTD PFRSDAHADR KRFSSSDSEE ENSP00000295321/1-819 EDASRHKQKP ESDDDSDREN KGEDTEMQND SFHSDSHMDR KKFHSSDSEE BACU009910/1-470 ---------- ---------- ---------- ---------- --XXXXXXXX ENSBTAP00000028213/1-822 EDASRHKQKP ESEEDSDGEN KGEDTEVQND SLPADAHVDR KRFNSSDSEE 401 450 ENSTTRP00000010983/1-820 EEPKRPKIDS DEDEEKEGVE EKVAKRKAAV LSDSDDEEKA SAKKSRVVSD bmy_10441T0/1-828 GEPERPKIDS DEDEEKEGAE EKVAKRKAAV LSD------- TAKKSRVVSD ENSP00000295321/1-819 EEHKKQKMDS DED-EKEGEE EKVAKRKAAV LSDSEDEEKA SAKKSRVVSD BACU009910/1-470 XXXXXXKIGS DEDEEKEGAE EKVAKRKAAV LSDSDDEEKA SAKKSRVVSD ENSBTAP00000028213/1-822 EEPKRAKIDS DEDEEKEGEE EKVAKRKAAV LSDSDDEEKA SAKKSRVVSD 451 500 ENSTTRP00000010983/1-820 ADDSDSDVLS DKSGKREKTI ASDSEEEAGR ELSDKKNEEK DLFGSDSESG bmy_10441T0/1-828 ADDSDSDVIS DKSGKREKTI ASDSEEEAGR ELSDKKNEEK DLFGSDSESG ENSP00000295321/1-819 ADDSDSDAVS DKSGKREKTI ASDSEEEAGK ELSDKKNEEK DLFGSDSESG BACU009910/1-470 ADDSDSDVIS DKSGKREKTI ASDSEEEAGK ELSDKKNEEK DLFGSDSESG ENSBTAP00000028213/1-822 ADDSDSDVIS DKSGKREKTI ASDSDEEAGK ELSDKKNEEK DLFGSDSESG 501 550 ENSTTRP00000010983/1-820 NEEENLIADI FGESGDEEEE EFTGFNQEDL EEEKSETQVK EAEDSDSDDN bmy_10441T0/1-828 NEEENLIADI FGESGDEEEE EFTGFNQEDL EEEKSETQVK EAEDSDSDDN ENSP00000295321/1-819 NEEENLIADI FGESGDEEEE EFTGFNQEDL EEEKGETQVK EAEDSDSDDN BACU009910/1-470 NEEENLIADI FGESGDEEEE EFTGFNQEDL EEEKSETQVK EAEDSDSDDN ENSBTAP00000028213/1-822 NEEENLIADI FGESGDEEEE EFTGFNQEDL EEEKSETQVK EAEDSDSDDN 551 600 ENSTTRP00000010983/1-820 IKRGKHMDFL SDFEMMLQRK KSMSGKRRRN RDGGTFISDA DDVVSAMIVK bmy_10441T0/1-828 IKRGKHMDFL SDFEMMLQRK KSLSGKRRRN RDGGTFISDA DDVVSAMIVK ENSP00000295321/1-819 IKRGKHMDFL SDFEMMLQRK KSMSGKRRRN RDGGTFISDA DDVVSAMIVK BACU009910/1-470 IKRGKHMDFL SDFEMMLQRK KSLSGKRRRN RDGGTFISDA DDVVSAMIVK ENSBTAP00000028213/1-822 IKRGKHMDFL SDFEMMLQRK KSMSGKRRRN RDGGTFISDA DDVVSAMIVK 601 650 ENSTTRP00000010983/1-820 MNEAAEEDRQ LNNQKKPALK KLTLLPTVVM HLKXXXXXXX XXXXXXXXXX bmy_10441T0/1-828 MNEAAEEDRQ LNNQKKPALK KLTLLPTVVM HLKKQDLKET FIDSGVMSAI ENSP00000295321/1-819 MNEAAEEDRQ LNNQKKPALK KLTLLPAVVM HLKKQDLKET FIDSGVMSAI BACU009910/1-470 MNEAAEEDRQ LNNQKKPALK KLTLLPTVVM HLKKQDLKET FIDSGVMSAI ENSBTAP00000028213/1-822 MNEAAEEDRQ LNNQKKPALK KLTLLPTVVM HLKKQDLKET FIDSGVMSAI 651 700 ENSTTRP00000010983/1-820 XXXXXXXXXX XXXXXXXXXX XXXXXXXLPS VSQETLKHSG IGRAVMYLYK bmy_10441T0/1-828 KEWLSPLPDR SLPALKIREE LLKILQELPS VSQETLKHSG IGRAVMYLYK ENSP00000295321/1-819 KEWLSPLPDR SLPALKIREE LLKILQELPS VSQETLKHSG IGRAVMYLYK BACU009910/1-470 KEWLSPLPDR SLPALKIREE LLKILQELPS VSQETLKHSG IGRAVMYLYK ENSBTAP00000028213/1-822 KEWLSPLPDR SLPALKIREE LLRILQELPS VSQETLKHSG IGRAVMYLYK 701 750 ENSTTRP00000010983/1-820 HPKESRSNKD MAGKLINEWS RPIFGLTSNY KGMTREEREQ RDLEQMPQRR bmy_10441T0/1-828 HPKESRSNKD MAGKLINEWS RPIFGLTSNY KGMTREEREQ RDLEQMPQRR ENSP00000295321/1-819 HPKESRSNKD MAGKLINEWS RPIFGLTSNY KGMTREEREQ RDLEQMPQRR BACU009910/1-470 HPKESRSNKD MAGKLINEWS RPIFGLTSNY KGMTREEREQ RDLEQMPQRR ENSBTAP00000028213/1-822 HPKESRSNKD MAGKLINEWS RPIFGLTSNY KGMTREEREQ RDLEQMPQRR 751 800 ENSTTRP00000010983/1-820 RMNSTGGQTP RRDLEKVLTG EEKALRPGDP GFCARARVPM PSNKDYVVRP bmy_10441T0/1-828 RMNSTGGQTP RRDLEKVLTG EEKALRPGDP GFCARARVPM PSNKDYVVRP ENSP00000295321/1-819 RMNSTGGQTP RRDLEKVLTG EEKALRPGDP GFCARARVPM PSNKDYVVRP BACU009910/1-470 RMNSTGGQTP RRDLEKVLTG EEKALRPGDP GFCARARVPM PSNKDYVVRP ENSBTAP00000028213/1-822 RMNSTGGQTP RRDLEKVLTG EEKALRPGDP GFCARARVPM PSNKDYVVRP 801 850 ENSTTRP00000010983/1-820 KWNVEMESSR FQGTSKKGIS RLDKQMRKFT DIRKKSRSAH AVKISIEGNK bmy_10441T0/1-828 KWNVEMESSR ---VSKQEDS KVDLKCRLLF ---------- -VFYFVFNNP ENSP00000295321/1-819 KWNVEMESSR FQATSKKGIS RLDKQMRKFT DIRKKSRSAH AVKISIEGNK BACU009910/1-470 KWNVEMESSR FQGTSKKGIS RLDKQMRKFT DIRKKSRSAH AVKISIEGNK ENSBTAP00000028213/1-822 KWNVEMESSR FQGTSKKGIS RLDKQMRKFT DIRKKSRSAH AVKISIEGNK 851 900 ENSTTRP00000010983/1-820 MPL bmy_10441T0/1-828 --- ENSP00000295321/1-819 MPL BACU009910/1-470 MPL ENSBTAP00000028213/1-822 MPL