KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:16 2014 Check: 00 .. Name: BACU000275/1-511 Len: 781 Check: 3136 Weight: 1.00 Name: ENSTTRP00000014025/1-765 Len: 781 Check: 2080 Weight: 1.00 Name: ENSBTAP00000028214/1-746 Len: 781 Check: 8390 Weight: 1.00 Name: bmy_09978T0/1-480 Len: 781 Check: 7668 Weight: 1.00 Name: ENSP00000412733/1-746 Len: 781 Check: 8176 Weight: 1.00 // 1 50 BACU000275/1-511 ---------- --------MA SIMEGPLSKW TNVMKGWQYR WFVLDYNAGL ENSTTRP00000014025/1-765 MPYRRLTSGN LLSLAAPKMA SIMEGPLSKW TNVMKGWQYR WFVLDYNAGL ENSBTAP00000028214/1-746 ---------- --------MA SIMEGPLSKW TNVMKGWQYR WFVLDYNAGL bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 ---------- --------MA SIMEGPLSKW TNVMKGWQYR WFVLDYNAGL 51 100 BACU000275/1-511 LSYYTSKDKM MRGSRRGCVR LRGAVIGIDD EDDSTFTITV DQKTFHFQAR ENSTTRP00000014025/1-765 LSYYTSKDKM MRGSRRGCVR LRGAVIGIDD EDDSTFTITV DQKTFHFQAR ENSBTAP00000028214/1-746 LSYYTSKDKM MRGSRRGCVR LRGAVIGIDD EDDSTFTITV DQKTFHFQAR bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 LSYYTSKDKM MRGSRRGCVR LRGAVIGIDD EDDSTFTITV DQKTFHFQAR 101 150 BACU000275/1-511 DADEREKWIH ALEETILRHT LQLQ------ ---------- -------GLD ENSTTRP00000014025/1-765 DADEREKWIH ALEETILRHT LQLQISTTLA FFQSSGISPV LEFSKIIGLD ENSBTAP00000028214/1-746 DADEREKWIH ALEETILRHT LQLQISTTLA FFQSSGISPV LEFSKIIGLD bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 DADEREKWIH ALEETILRHT LQLQISTTLA FFQSSGISPV LEFSKIIGLD 151 200 BACU000275/1-511 SGFVPSVQDF DKKLTEADAY LQILIEQLKL FDDKLQNCKD DEQRKKIETL ENSTTRP00000014025/1-765 SGFVPSVQDF DKKLTEADAY LQILIEQLKL FDDKIQNCKD DEQRKKIETL ENSBTAP00000028214/1-746 SGFVPSVQDF DKKLTEADAY LQILIEQLKL FDDKLQNCKD DEQRKKIETL bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 SGFVPSVQDF DKKLTEADAY LQILIEQLKL FDDKLQNCKE DEQRKKIETL 201 250 BACU000275/1-511 KETTNSMVES IKHCIVLLQI AKDQCNAEKH ADGIISTINP VDAIYQPSPL ENSTTRP00000014025/1-765 KETTNSMVES IKHCIVLLQI AK-------- -----STINP VDAIYQPSPL ENSBTAP00000028214/1-746 KETTNSMVES IKHCIVLLQI AK-------- -----STINP VDAIYQPSPL bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 KETTNSMVES IKHCIVLLQI AK-------- -----STINP VDAIYQPSPL 251 300 BACU000275/1-511 EPVINTMPSQ TVLPPEPAQL CKSEQRPSSL PVGPVLATTL GHHQTPTPNS ENSTTRP00000014025/1-765 EPVINTMPSQ TVLPPEPAQL CKSEQRPSSL PVGPALATTL GHHQTPTPNS ENSBTAP00000028214/1-746 EPVVNTMPSQ TVLPPEPTQL CKSEQRPSSL PVGPVLA-TL GHHQTPTPNS bmy_09978T0/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000412733/1-746 EPVISTMPSQ TVLPPEPVQL CKSEQRPSSL PVGPVLA-TL GHHQTPTPNS 301 350 BACU000275/1-511 TGSGHSPPSS SLTSPSHVNL SPNTVPEFSY SSSEDEFYDA DEFHQSGSSP ENSTTRP00000014025/1-765 TGSGHSPPSS SLTSPSHVNL SPNTVPEFSY SSSEDEFYDA DEFHQSGSSP ENSBTAP00000028214/1-746 TGSGHSPPSS SLTSPSHVNL SPNTVPEFSY SSSEDEFYDA DEFHQSGSSP bmy_09978T0/1-480 -GSGHSPPSS SLTSPSHVNL SPNTVPEFSY SSSEDEFYDA DEFHQSGSSP ENSP00000412733/1-746 TGSGHSPPSS SLTSPSHVNL SPNTVPEFSY SSSEDEFYDA DEFHQSGSSP 351 400 BACU000275/1-511 KHLIDSSGSA SVLTHSSSGN SLKRPDTTES LNSSMSNGTS DADLFDSHDE ENSTTRP00000014025/1-765 KHLIDSSGSA SVLTHSSSGN SLKRPDTTES LNSSMSNGTS DADLFDSHDD ENSBTAP00000028214/1-746 KRLIDSSGSA SVLTHSSSGN SLKRPDTTES LNSSMSNGTS DADLFDSHDD bmy_09978T0/1-480 KHLIDSSGSA SVLTHSSSGN SLKRPDTTES LNSSMSNGTS DADLFDSHDE ENSP00000412733/1-746 KRLIDSSGSA SVLTHSSSGN SLKRPDTTES LNSSLSNGTS DADLFDSHDD 401 450 BACU000275/1-511 RDDEGEAGSV EEHKSVIMHL LSQVRLGMDL TKVVLPTFIL ERRSLLEMYA ENSTTRP00000014025/1-765 RDDEGEAGSV EEHKSVIMHL LSQVRLGMDL TKXXXXXXXX XXXXXXXXXX ENSBTAP00000028214/1-746 RDDEGEAGSV EEHKSVIMHL LSQVRLGMDL TKIVLKTKIL RHRSLIVMYG bmy_09978T0/1-480 RDDEGEAGSV EEHKSVIMHL LSQVRLGMDL TKVVLPTFIL ERRSLLEMYA ENSP00000412733/1-746 RDDDAEAGSV EEHKSVIMHL LSQVRLGMDL TKVVLPTFIL ERRSLLEMYA 451 500 BACU000275/1-511 DFFAHPDLFV SISDQKDARD RMVQVVKWYL SAFHAGRKGS VAKKPYNPIL ENSTTRP00000014025/1-765 XXXXXXXXXX XISDQKDARD RMVQVVKWYL SAFHAGRKGS VAKKPYNPVL ENSBTAP00000028214/1-746 FFFVFMSLFN SISDQKDARD RMVQVVKWYL SAFHAGRKGS VAKKPYNPIL bmy_09978T0/1-480 DFFAHPDLFV SISDQKDARD RMVQVVKWYL SAFHAGRKGS VAKKPYNPIL ENSP00000412733/1-746 DFFAHPDLFV SISDQKDPKD RMVQVVKWYL SAFHAGRKGS VAKKPYNPIL 501 550 BACU000275/1-511 GEIFQCHWTL PNDTEENV-- ---------- ---------- ------FQPF ENSTTRP00000014025/1-765 GEIFQCHWTL PNDTEENVEL VSEGPVPWVS KNSVTFVAEQ VSHHPPISAF ENSBTAP00000028214/1-746 GEIFQCHWTL PNDTEENVEL VSEGPVPWVS KNSVTFVAEQ VSHHPPISAF bmy_09978T0/1-480 GEIFQCHWTL PNDTEENVEL VSEGPVPWVS KNSVTFVAEQ VSHHPPISAF ENSP00000412733/1-746 GEIFQCHWTL PNDTEENTEL VSEGPVPWVS KNSVTFVAEQ VSHHPPISAF 551 600 BACU000275/1-511 MLSVLTRR-- YNSMLISGPN ---------- ---------- ---------Q ENSTTRP00000014025/1-765 YAECFNKKIQ FNAHIWTKSK FLGMSIGVHN IGQGCVSCLD HDEHYILTFP ENSBTAP00000028214/1-746 YAECFNKKIQ FNAHIWTKSK FLGMSIGVHN IGQGCVSCLE HDEHYILTFP bmy_09978T0/1-480 YAECFNKKIQ FNAHIWTKSK FLGMSIGVHN IGQGCVSCLD HDEHYILTFP ENSP00000412733/1-746 YAECFNKKIQ FNAHIWTKSK FLGMSIGVHN IGQGCVSCLD YDEHYILTFP 601 650 BACU000275/1-511 NSLG------ ---------- -CQLGCTT-- ---------- ---------- ENSTTRP00000014025/1-765 NGYGR---SI LTVPWVELGG ECNINCSKTG YSANIIFHTK PFYGGKKHRV ENSBTAP00000028214/1-746 NGYGR---SI LTVPWVELGG ECNINCSKTG YSANIVFHTK PFYGGKKHRI bmy_09978T0/1-480 NGYGRQVESI LTVPWVELGG ECNINCSKTG YSANIVFHTK PFYGGKKHRV ENSP00000412733/1-746 NGYGR---SI LTVPWVELGG ECNINCSKTG YSANIIFHTK PFYGGKKHRI 651 700 BACU000275/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014025/1-765 TAEIFSPNDK KSFCSIEGEW NGVMYAKYST GENVVFIDTK KLPIIKKKVR ENSBTAP00000028214/1-746 TAEIFSPNDK KSFCSIEGEW NGVMYAKYST GENVVFIDTK KLPIIKKKVR bmy_09978T0/1-480 TAEIFSPNDK KSFCSIEGEW NGVMYAKYST GENVVFIDTK KLPIIKKKVR ENSP00000412733/1-746 TAEIFSPNDK KSFCSIEGEW NGVMYAKYAT GENTVFVDTK KLPIIKKKVR 701 750 BACU000275/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014025/1-765 KLEDQNEYES RCLWKDVTFN LKIRDIDAAT EAKHRLEERQ RAEARERKEK ENSBTAP00000028214/1-746 KLEDQNEYES RCLWKDVTFN LKIRDIDAAT EAKHRLEERQ RAEARERKEK bmy_09978T0/1-480 KLEDQNEYES RCLWKDVTFN LKIRDIDAAT EAKHRLEERQ RAEARERKEK ENSP00000412733/1-746 KLEDQNEYES RSLWKDVTFN LKIRDIDAAT EAKHRLEERQ RAEARERKEK 751 800 BACU000275/1-511 ---------- ---------- ---------- - ENSTTRP00000014025/1-765 EIQWETRLFH EDGECWVYDE PLLKRLGAAK H ENSBTAP00000028214/1-746 EIQWETRLFH EDGECWVYDE PLLKRLGAAK H bmy_09978T0/1-480 EIQWETRLFH EDGECWVYDE PLLKRLGAAK H ENSP00000412733/1-746 EIQWETRLFH EDGECWVYDE PLLKRLGAAK H