KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:17 2014 Check: 00 .. Name: ENSTTRP00000014026/1-1217 Len: 1233 Check: 8146 Weight: 1.00 Name: ENSP00000346890/1-1219 Len: 1233 Check: 1509 Weight: 1.00 Name: ENSBTAP00000028220/1-1036 Len: 1233 Check: 5404 Weight: 1.00 Name: bmy_09979T0/1-973 Len: 1233 Check: 2242 Weight: 1.00 Name: BACU000274/1-1233 Len: 1233 Check: 4 Weight: 1.00 // 1 50 ENSTTRP00000014026/1-1217 MLRRVTVAAV CATRRKLWCE AGRELAALWR IEARGRCEDS AATRPFPILT ENSP00000346890/1-1219 MLRRVTVAAV CATRRKL-CE AGRELAALWG IETRGRCEDS AAARPFPILA ENSBTAP00000028220/1-1036 ---------- ---------- ---------- ---------- ---------- bmy_09979T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU000274/1-1233 MLRRVTVAAV CATGRKLWCE AGRELAALWR IEARGRCEDS AAARPFPILT 51 100 ENSTTRP00000014026/1-1217 MPGRNKAKST CSCSDRQLNG QDLGESGRVA RLGADESEEE GRRGPVSNVG ENSP00000346890/1-1219 MPGRNKAKST CSCPDLQPNG QDLGENSRVA RLGADESEEE GRRGSLSNAG ENSBTAP00000028220/1-1036 ---------- ---------- ---------- ---------- ---------- bmy_09979T0/1-973 MPGRNKAKST CSCPDLQPNG QDLGESGRVA RLGADESEEE GRRGPVSNVG BACU000274/1-1233 MPGRNKAKST CSCPDLQPNG QDLGESGRVA RLGADESEEE GRRGPVSNVG 101 150 ENSTTRP00000014026/1-1217 DPEIVKSPSD PKQYRYIKLR NGLQALLISD LSNVEGKMGD ATDDEEEEEE ENSP00000346890/1-1219 DPEIVKSPSD PKQYRYIKLQ NGLQALLISD LSNMEGKTGN TTDDEEEEEV ENSBTAP00000028220/1-1036 ---------- ---------- ---------- ---------- ---DDEEEEE bmy_09979T0/1-973 DPEIVKSPSD PKQYRYIKLR NGLQALLISD LSNME----- ---------- BACU000274/1-1233 DPEIVKSPSD PKQYRYIKLR NGLQALLISD LSNMEGKMGD ATDDEEEEEE 151 200 ENSTTRP00000014026/1-1217 EEEEE----- ---DDDEDSG AEIEDDDEEG FDDEDEFDDD -DEHDDDDLD ENSP00000346890/1-1219 EEEEE----- ---DDDEDSG AEIEDDDEEG FDDEDEFDDE ----HDDDLD ENSBTAP00000028220/1-1036 EEEEE----- ---------- ---------- ---------- ---------- bmy_09979T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU000274/1-1233 EEEEEEDDDD DDDDDDEDSG AEIEDDDEEG FDDEDEFDDD DDEHDDDDLD 201 250 ENSTTRP00000014026/1-1217 TEDNELEELE ERAEARKKTT EKQQLQSLFL LLSKLTDRLW FKSTYTKMSS ENSP00000346890/1-1219 TEDNELEELE ERAEARKKTT EKQQLQSLFL LWSKLTDRLW FKSTYSKMSS ENSBTAP00000028220/1-1036 --------LE ERAEARKKTT EKQQLQSLFL LWSKLTDKLW FKSTYTKMSS bmy_09979T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU000274/1-1233 TEDNELEELE ERAEARKKTT EKQQSQSLFL LWSKLTDRLW FKSTYTKMSS 251 300 ENSTTRP00000014026/1-1217 TLLVETRKLY GVVGAESRSA PLQHLAGWQE EEQQGETDTV LSAAALCVGV ENSP00000346890/1-1219 TLLVETRNLY GVVGAESRSA PVQHLAGWQA EEQQGETDTV LSAAALCVGV ENSBTAP00000028220/1-1036 TQLFKTRNLN GVVGAESRSA PVQHFAGWQE EEQQGETDTV LSAAALCVGV bmy_09979T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU000274/1-1233 TLLVETRKLY GVVGAESRSA PVQHLAGWQE EEQQGETDTV LSAAALCVGV 301 350 ENSTTRP00000014026/1-1217 GSFADPDDLP GLAHFLEHMV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC ENSP00000346890/1-1219 GSFADPDDLP GLAHFLEHMV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC ENSBTAP00000028220/1-1036 GSFADPDDLP GLAHFLEHMV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC bmy_09979T0/1-973 ---------- --------VV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC BACU000274/1-1233 GSFADPDDLP GLAHFLEHMV FMGSLKYPDE NGFDAFLKKH GGSDNASTDC 351 400 ENSTTRP00000014026/1-1217 ERTVFQFDVQ RKYXXXXXXX WAQFFIHPLM IKDAIDREVE AVDSEYQLAR ENSP00000346890/1-1219 ERTVFQFDVQ RKYFKEALDR WAQFFIHPLM IRDAIDREVE AVDSEYQLAR ENSBTAP00000028220/1-1036 ERTVFQFDVQ RKYFKEALDR WAQFFIHPLM IRDAIDREVE AVDSEYQLAR bmy_09979T0/1-973 ERTVFQFDVQ RKYFKEALDR WAQFFIHPLM IRDAIDREVE AVDSEYQLAR BACU000274/1-1233 ERTVFQFDVQ RKYFKEALDR WAQFFIHPLM IRDAIDREVE AVDSEYQLAR 401 450 ENSTTRP00000014026/1-1217 PSDANRKEML FGSLARPGHP MGKFFWGNAE TLKHEPKRNN IDTHARLREF ENSP00000346890/1-1219 PSDANRKEML FGSLARPGHP MGKFFWGNAE TLKHEPRKNN IDTHARLREF ENSBTAP00000028220/1-1036 PSDANRKEML FGSLARPGHP MGKFFWGNAE TLKHEPKRNN TDTHARLREF bmy_09979T0/1-973 PSDANRKEML FGSLARPGHP MGKFFWGNAE TLKHEPKRNN IDTHARLREF BACU000274/1-1233 PSDANRKEML FGSLARPGHP MGKFFWGNAE TLKHEPKRNN IDTHARLREF 451 500 ENSTTRP00000014026/1-1217 WMHYYSAHYM TLVVQSKETL DTLEKWVTEI FSQIPNXXXX XXXXXXXXXX ENSP00000346890/1-1219 WMRYYSSHYM TLVVQSKETL DTLEKWVTEI FSQIPNNGLP RPNFGHLTDP ENSBTAP00000028220/1-1036 WLRYYSAHYM TLVVQSKETL DTLEKWVTEI FSQIPNNGLP KPNFGHLTDP bmy_09979T0/1-973 WMRYYSAHYM TLVVQSKETL DTLEKWVTEI FSQIPNNGLP KPNFGHLTDP BACU000274/1-1233 WMHYYSAHYM TLVVQSKETL DTLEKWVTEI FSQIPNNGLP KPNFGHLTDP 501 550 ENSTTRP00000014026/1-1217 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVKPLH YISWLVGHEG ENSP00000346890/1-1219 FDTPAFNKLY RVVPIRKIHA LTITWALPPQ QQHYRVKPLH YISWLVGHEG ENSBTAP00000028220/1-1036 FDTPAFNKLY RVVPIRKIHA LTITWALPPQ QQHYRVKPLH YISWLVGHEG bmy_09979T0/1-973 FDTPAFNKLY RVVPIRKIHA LTITWALPPQ QQHYR----- ---------- BACU000274/1-1233 FDTPAFNKLY RVVPIRKIHA LTITWALPPQ QQHYRVKPLH YISWLVGHEG 551 600 ENSTTRP00000014026/1-1217 KGSIL--LTR KCWALALFGG NGETGFEQNS TYSVFSISIT LTD-SYEHFY ENSP00000346890/1-1219 KGSILSFLRK KCWALALFGG NGETGFEQNS TYSVFSISIT LTDEGYEHFY ENSBTAP00000028220/1-1036 KGSILSYLRK KCWALALFGG NGETGFEQNS TYSVFSISIT LTDEGYEHFY bmy_09979T0/1-973 ---------- -CWALALFGG NGETGFEQNS TYSVFSISIT LTDEGYEHFY BACU000274/1-1233 KGSILSYLRK KCWALALFGG NGETGFEQNS TYSVFSISIT LTDEGYEHFY 601 650 ENSTTRP00000014026/1-1217 XXXXXXXXXX XXXXXX-XXX XIFEEIQKIE DNEFHYQEQT DPVEYVENMC ENSP00000346890/1-1219 EVAYTVFQYL KMLQKLGPEK RIFEEIRKIE DNEFHYQEQT DPVEYVENMC ENSBTAP00000028220/1-1036 EVAHTVFQYL KMLQKLGPEK RIFEEIQKIE DNEFHYQEQT DPVEYVENMC bmy_09979T0/1-973 EVAHTVFQYL KMLQKLGPEK RIFEEIQKIE DNEFHYQEQT DPVEYVENMC BACU000274/1-1233 EVAHTVFQYL KMLQKLGPEK RIFEEIQKIE DNEFHYQEQT DPVEYVENMC 651 700 ENSTTRP00000014026/1-1217 ENMQLYPLQD FLTGDQLLFE YKPEVIAEAL NQLVPQKANL VLLSGANEGK ENSP00000346890/1-1219 ENMQLYPLQD ILTGDQLLFE YKPEVIGEAL NQLVPQKANL VLLSGANEGK ENSBTAP00000028220/1-1036 ENMQLYPLQD FLTGDQLLFE YKPEVIAEAL NQLVPQKANL VLLSGANEGK bmy_09979T0/1-973 ENMQLYPLQD FLTGDQLLFE YKPEVIAEAL NQLVPQKANL VLLSGANEGK BACU000274/1-1233 ENMQLYPLQD FLTGDQLLFE YKPEVIAEAL NQLVPQKANL VLLSGANEGK 701 750 ENSTTRP00000014026/1-1217 CDLKEKWFGT QYSMEDIENS WAELWENNFE LNPDLHLPAE NKYIATDFML ENSP00000346890/1-1219 CDLKEKWFGT QYSIEDIENS WAELWNSNFE LNPDLHLPAE NKYIATDFTL ENSBTAP00000028220/1-1036 CDLKEKWFGT QYSMEDIENS WAELWKSDFE LNPDLHLPAE NKYIATDFML bmy_09979T0/1-973 CDLKEKWFGT QYSMEDIENS WAELWKSNFE LNPDLHLPAE NKYIATDFML BACU000274/1-1233 CDLKEKWFGT QYSMEDIENS WAELWKSNFE LNPDLHLPAE NKYIATDFML 751 800 ENSTTRP00000014026/1-1217 KAFDCPETEY PVKIVNTPQG CLWYKKDNKF KIPKAYIRFH LISPLIQKSA ENSP00000346890/1-1219 KAFDCPETEY PVKIVNTPQG CLWYKKDNKF KIPKAYIRFH LISPLIQKSA ENSBTAP00000028220/1-1036 KAFDCPETEY PVKIVNTPQG CLWYKKDNKF KIPKAYIRFH LISPLIQKSA bmy_09979T0/1-973 KAFDCPETEY PVKIVNTPQG CLWYKKDNKF KIPKAYIRFH LISPLIQKSA BACU000274/1-1233 KAFDCPETEY PVKIVNTPQG CLWYKKDNKF KIPKAYIRFH LISPLIQKSA 801 850 ENSTTRP00000014026/1-1217 ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK ENSP00000346890/1-1219 ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK ENSBTAP00000028220/1-1036 ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK bmy_09979T0/1-973 ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK BACU000274/1-1233 ANVVLFDIFV NILTHNLAEP AYEADVAQLE YKLVAGEHGL IIRVKGFNHK 851 900 ENSTTRP00000014026/1-1217 LPLLFQL-ID YLAEFNSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL ENSP00000346890/1-1219 LPLLFQLIID YLAEFNSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL ENSBTAP00000028220/1-1036 LPLLFQLIID YLAEFSSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL bmy_09979T0/1-973 LPLLFQLIID YLAEFSSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL BACU000274/1-1233 LPLLFQLIID YLAEFSSTPA VFTMITEQLK KTYFNILIKP ETLAKDVRLL 901 950 ENSTTRP00000014026/1-1217 ILEYARWSMI DKYRALMDGL SLESLLSFVR ELKSQLFVEG LVQGNVTSTE ENSP00000346890/1-1219 ILEYARWSMI DKYQALMDGL SLESLLSFVK EFKSQLFVEG LVQGNVTSTE ENSBTAP00000028220/1-1036 ILEYSRWSMI DKYRALMDGL SLESLLSFVR EFKAQLFVEG LVQGNVTSTE bmy_09979T0/1-973 ILEYARWSMI DKYRALMDGL SLESLLSFVR ELKSQLFVEG LVQGNVTSTE BACU000274/1-1233 ILEYARWSMI DKYRALMDGL SLESLLSFVR ELKSQLFVEG LVQGNVTSTE 951 1000 ENSTTRP00000014026/1-1217 SMDFLKYVVD KLNFMPLEQE MPVQFQVVEL PSGHHLCKVR ALNKGDANSE ENSP00000346890/1-1219 SMDFLKYVVD KLNFKPLEQE MPVQFQVVEL PSGHHLCKVK ALNKGDANSE ENSBTAP00000028220/1-1036 STDFLKYVVD KLNFMPLEQE MPVQFQVVEL PSGHHLCKVR ALNRGDANSE bmy_09979T0/1-973 SMDFLKYVVD KLNFMPLEQE MPVQFQVVEL PSGHHLCKVR ALNKGDANSE BACU000274/1-1233 STDFLKYVVD KLNFMPLEQE MPVQFQVVEL PSGHHLCKVR ALNRGDANSE 1001 1050 ENSTTRP00000014026/1-1217 VTVYYQSGAR SLKEYTLMEL LVMHMEEPCF DFLRTKQTLG YHVYPTCRNT ENSP00000346890/1-1219 VTVYYQSGTR SLREYTLMEL LVMHMEEPCF DFLRTKQTLG YHVYPTCRNT ENSBTAP00000028220/1-1036 VTVYYQSGAR SLKEYTLMEL LVMHMEEPCF DFLRTKQTLG YHVYPTCRNT bmy_09979T0/1-973 VTVYYQSGAR SLKEYTLMEL LVMHMEEPCF DFLRTKQTLG YHVYPTCRNT BACU000274/1-1233 VTVYYQSGAR SLKEYTLMEL LVMHMEEPCF DFLRTKQTLG YHVYPTCRNT 1051 1100 ENSTTRP00000014026/1-1217 SGILGFSVTV GTQATKYNSE VVDKKIEEFL SSFEEKIENL TEDAFNTQVT ENSP00000346890/1-1219 SGILGFSVTV GTQATKYNSE VVDKKIEEFL SSFEEKIENL TEEAFNTQVT ENSBTAP00000028220/1-1036 SGILGFSVTV GTQATKYNSE VVDKKIEEFL SSFEEKIENL TEDAFNTQVT bmy_09979T0/1-973 SGILGFSVTV GTQATKYNSE VVDKKIEEFL SSFEEKIENL TEDAFNTQVT BACU000274/1-1233 SGILGFSVTV GTQATKYNSE VVDKKIEEFL SSFEEKIENL TEDAFNTQVT 1101 1150 ENSTTRP00000014026/1-1217 ALIKLKECED THLGEEVDRN WNEVVTQQYL FDRLAHEIEA LKSFSKSDLV ENSP00000346890/1-1219 ALIKLKECED THLGEEVDRN WNEVVTQQYL FDRLAHEIEA LKSFSKSDLV ENSBTAP00000028220/1-1036 ALIKLKECED THLGEEVDRN WNEVVTRQYL FDRLAHEIEA LKSFSKSDLV bmy_09979T0/1-973 ALIKLKECED THLGEEVDRN WNEVVTQQYL FDRLAHEIEA LKSFSKSDLV BACU000274/1-1233 ALIKLKECED THLGEEVDRN WNEVVTQQYL FDRLAHEIEA LKSFSKSDLV 1151 1200 ENSTTRP00000014026/1-1217 NWFKAHRGPG SKMLSVHVVG FGKYEPEEDG TPSGEDSNSS CEV-MQLTYL ENSP00000346890/1-1219 NWFKAHRGPG SKMLSVHVVG YGKYELEEDG TPSSEDSNSS CEV-MQLTYL ENSBTAP00000028220/1-1036 NWFKAHRGPG SKMLSVHVVG FGKYELEEDG TPSGEDSNSS CDV-MQLTYL bmy_09979T0/1-973 NWFKAHRGPG SKMLSVHVVG FGKYEPEEDG TPSGEDSNSS CEV-MQLTYL BACU000274/1-1233 NWFKAHRGPG SKMLSVHVVG FGKYEPEEDG TPSGEDSNSS CEVMMQLTYL 1201 1250 ENSTTRP00000014026/1-1217 PTSPLLADCT IPVIDIRAFT SRLNLLPYHK IV- ENSP00000346890/1-1219 PTSPLLADCI IPITDIRAFT TTLNLLPYHK IVK ENSBTAP00000028220/1-1036 PASPLLVDCT VPIVDIRGFT SRLNLLPYHK IVK bmy_09979T0/1-973 PTSPLLADCT IPVIDIRAFT SRLNLLPYHK IVK BACU000274/1-1233 PTSPLLADCT IRVIDIRAFT SRLNLLPYHK IVK