KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:18 2014 Check: 00 .. Name: ENSP00000362304/1-1226 Len: 1227 Check: 7715 Weight: 1.00 Name: ENSBTAP00000028224/1-1216 Len: 1227 Check: 7582 Weight: 1.00 Name: bmy_16722T0/1-869 Len: 1227 Check: 2172 Weight: 1.00 Name: BACU001930/1-1063 Len: 1227 Check: 7151 Weight: 1.00 Name: ENSTTRP00000007205/1-1227 Len: 1227 Check: 4357 Weight: 1.00 // 1 50 ENSP00000362304/1-1226 MAPLRALLSY LLPLHCALCA AAGSRTPELH LSGKLSDYGV TVPCSTDFRG ENSBTAP00000028224/1-1216 MAPVCARLSC LLLLHCALCA AAGSGTEELH FSRKLSDYGV TVPCSTDSQG bmy_16722T0/1-869 MAPLRARLSF LLLLHCALCA NAGSRTPELR FSRKLSDYGV TVPCSTDSQG BACU001930/1-1063 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007205/1-1227 MAPLRARLSC LLLLHCALCA NAGSRTPELR FSRKLSDYGV TVPCSTDSQG 51 100 ENSP00000362304/1-1226 RFLSHVVSGP AAASAGSMVV DTPPTLPRHS SHLRVARSPL HPGG-TLWPG ENSBTAP00000028224/1-1216 RFLSHVVSGP AAASAGSVKG DGPPSPLSHS GRLRVARSPL RPEGVTLQPG bmy_16722T0/1-869 RFLSHVVSGP PAASSGSTEV DRPPAPLSHS GHLRVARSPL RPKGVTLQPG BACU001930/1-1063 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007205/1-1227 RFLSHVVSGP PAASSGSTEV DRPPAPLSHS GHLRVARSPL RPKGVTLQPG 101 150 ENSP00000362304/1-1226 RVGRHSLYFN VTVFGKELHL RLRPNRRLVV PGSSVEWQED FRELFRQPLR ENSBTAP00000028224/1-1216 RMGRSSLYFN VTVFGEELHL HLRPNRRLVV PGASVEWQED FQELFRQPLQ bmy_16722T0/1-869 RMGRSSLYFN VTVSGEELHL HLRPNRRLVV PGASVEWQED FRELFRQPLQ BACU001930/1-1063 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007205/1-1227 SGGRSSLYFN VTVSGEELHL HLRPNRRLVV PGASVEWQED FRELFRQPLQ 151 200 ENSP00000362304/1-1226 QECVYTGGVT GMPGAAVAIS NCDGLAGLIR TDSTDFFIEP LERGQQEKEA ENSBTAP00000028224/1-1216 RECVYTGGVT GMPGAAVAIS NCDGLAGLIR TDSTDYFIEP FERGQQEAEA bmy_16722T0/1-869 RECVYTGGVT GMPGAAVAIS NCDGLAGLIR TDSTDYFIEP LERGQQETEA BACU001930/1-1063 ---------- -MPGAAVAIS NCDGLAGLIR TDSTDYFIEP LERGQQETEA ENSTTRP00000007205/1-1227 RECVYTGGVT GMPGAAVAIS NCDGLAGLIR TDSTDYFIEP LERGQQETEA 201 250 ENSP00000362304/1-1226 SGRTHVVYRR EAVQQEWAEP DGDLHNEAFG LGDLPNLLGL VGDQLGDTER ENSBTAP00000028224/1-1216 GGRKHVVYRR EVVRQRWTEP LGDLHNEAFG LGDLPNLLGL VGDRLGEAER bmy_16722T0/1-869 SGRMHVVYRR EVVQQAWTEP LGDLHNEAFG LGDLPNLLGL VGDRLGEAER BACU001930/1-1063 SGRMHVVYRR EVVQQAWTEP LGDLHNEAFG LGDLPNLLGL VGDRLGEAER ENSTTRP00000007205/1-1227 SGRMHVVYRR EVIQQAWTEP LGDLHNEAFG LGDLPNLLGL VGDRLGEAER 251 300 ENSP00000362304/1-1226 KRRHAKPGSY SIEVLLVVDD SVVRFHGKEH VQNYVLTLMN IVDEIYHDES ENSBTAP00000028224/1-1216 KRRHATPGSY SIEVLLAVDD SVVRFHGKEH VQNYVLTLMN IVDEIYHDES bmy_16722T0/1-869 KRRHAKPGSY SMEVLLAVDD SVVRFHGKEH VQIYVLTLMN IVDEIYHDES BACU001930/1-1063 KRRHAKPGSY SMEVLLAVDD SVVRFHGKEH VQNYVLTLMN IVDEIYHDES ENSTTRP00000007205/1-1227 KRRHAKPGSY SMEVLLAVDD SVVRFHGKEH VQNYVLTLMN IVDEIYHDES 301 350 ENSP00000362304/1-1226 LGVHINIALV RLIMVGYRQS LSLIERGNPS RSLEQVCRWA HSQQRQDPSH ENSBTAP00000028224/1-1216 LGVHINIALV RLIMVGYRQS LSLIERGNPS RSLEQVCRWA HSQQRQDPGH bmy_16722T0/1-869 LGVHINIALV RLIMVGYRQS LSLIERGNPS RSLEQVCRWA HSQQRQDPGH BACU001930/1-1063 LGVHINIALV RLIMVGYRQS LSLIERGNPS RSLEQVCRWA HSQQRQDPGH ENSTTRP00000007205/1-1227 LGVHINIALV RLIMVGYRQS LSLIERGNPS RSLEQVCRWA QSQQRQDPGH 351 400 ENSP00000362304/1-1226 AEHHDHVVFL TRQDFGPSGM QGYAPVTGMC HPLRSCALNH EDGFSSAFVI ENSBTAP00000028224/1-1216 AEHHDHVVFL TRQDFGPS-- -GYAPVTGMC HPLRSCALNH EDGFSSAFVV bmy_16722T0/1-869 VEHHDHVVFL TRQDFGPS-- -GYAPVTGMC HPLRSCALNH EDGFSSAFVV BACU001930/1-1063 AEHHDHVVFL TRQDFGPS-- -GYAPVTGMC HPLRSCALNH EDGFSSAFVV ENSTTRP00000007205/1-1227 AEHHDHVVFL TRQDFGPSGT QGYAPVTGMC HPLRSCALNH EDGFSSAFVV 401 450 ENSP00000362304/1-1226 AHETGHVLGM EHDGQGNGCA DETSLGSVMA PLVQAAFHRF HWSRCSKLEL ENSBTAP00000028224/1-1216 AHETGHVLGM EHDGQANGCA DETSLGSVMA PLVQAAFHRF HWSRCSKLEL bmy_16722T0/1-869 AHETGHVLGM EHDGQGNGCA DETSLGSVMA PLVQAAFHRF HWSHCSKLEL BACU001930/1-1063 AHETGHVLGM EHDGQGNGCA DETSLGSVMA PLVQAAFHRF HWSHCSKLEL ENSTTRP00000007205/1-1227 AHETGHVLGM EHDGQGNGCA DETSLGSVMA PLVQAAFHRF HWSHCSKLEL 451 500 ENSP00000362304/1-1226 SRYLPSYDCL LDDPFDPAWP QPPELPGINY SMDEQCRFDF GSGYQTCLAF ENSBTAP00000028224/1-1216 SRYLPSYDCL LDDPFAPAWP QPPELPGIDY SMDEQCRFDF GTGYHTCSAF bmy_16722T0/1-869 SRYLPSYDCL LDDPFAPAWP RPPELPGIDY SMDEQCRFDF GTGYHTCSAF BACU001930/1-1063 SRYLPSYDCL LDDPFAPAWP RPPELPGIDY SMDEQCRFDF GTGYHTCSAF ENSTTRP00000007205/1-1227 SRYLPSYDCL LDDPFAPAWP RPPELPGIDY SMDEQCRFDF GTGYHTCSAF 501 550 ENSP00000362304/1-1226 RTFEPCKQLW CSHPDNPYFC KTKKGPPLDG TECAPGKWCF KGHCIWKSPE ENSBTAP00000028224/1-1216 RTFEACRQLW CSHPDNPYFC KTKKGPPLDG TECAPGKWCF KGHCIWKSPE bmy_16722T0/1-869 RTFEACKQLW CSHPDNPYFC KTKKGPPLDG TECAPGKVVV K--------- BACU001930/1-1063 RTFEACKQLW CSHPDNPYFC KTKKGPPLDG TECAPGKWCF KGHCIWKSPE ENSTTRP00000007205/1-1227 RTFEACKQLW CSHPDNPYFC KTKKGPPLDG TECAPGKWCF KGHCIWKSPE 551 600 ENSP00000362304/1-1226 QTYGQDGGWS SWTKFGSCSR SCGGGVRSRS RSCNNPSPAY GGRLCLGPMF ENSBTAP00000028224/1-1216 QTYGQDGGWS SWTKFGSCSR SCGGGVRSRS RSCDNPPPAY GGRMCSGPMF bmy_16722T0/1-869 ---------- ---------- ---------- ------FPAY GGRLCSGPTF BACU001930/1-1063 QTYGQDGGWS SWTKFGSCSR SCGGGVRSRS RSCDNPPPAY GGRLCSGPTF ENSTTRP00000007205/1-1227 QTYGQDGGWS SWTKFGSCSR SCGGGVRSRS RSCDNPPPAY GGRLCSGPTF 601 650 ENSP00000362304/1-1226 EYQVCNSEEC PGTYEDFRAQ QCAKRNSYYV HQNAKHSWVP YEPDDDAQKC ENSBTAP00000028224/1-1216 QYQICNSEEC PGPYEDFRAQ QCAKRSSYYI HQNAKHSWIP YEPDDDAQKC bmy_16722T0/1-869 QYQVCNGEEC PGPYEDFRAQ QCAKRNSYYV HQNAKHSWIP YEPDD----- BACU001930/1-1063 QYQVCNGEEC PGPYEDFRAQ QCAKRNSYYV HQNAKHSWIP YEPDDDAQKC ENSTTRP00000007205/1-1227 QYQVCNGEEC PGPYEDFRAQ QCAKRNSYYV HQNAKHSWIP YEPDDDAQKC 651 700 ENSP00000362304/1-1226 ELICQSADTG DVVFMNQVVH DGTRCSYRDP YSVCARGECV PVGCDKEVGS ENSBTAP00000028224/1-1216 ELICQSEDTG DVVFMNQVVH DGTRCSYRDL YSVCARGECV PVGCDKEVGS bmy_16722T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU001930/1-1063 ELICQSEDTG DVVFMNQVVH DGTRCSYRDP YSVCARGECV PVGCDKEVGS ENSTTRP00000007205/1-1227 ELICQSEDTG DVVFMNQVVH DGTRCSYRDP YSVCARGECV PVGCDKEVGS 701 750 ENSP00000362304/1-1226 MKADDKCGVC GGDNSHCRTV KGTLGKASKQ AGALKLVQIP AGARHIQIEA ENSBTAP00000028224/1-1216 MKADDKCGVC GGDNSHCRTV KGTLGKASKQ AGALKLVQIP AGARHIQIEE bmy_16722T0/1-869 ---------- ---------- ---------- -GALKLVQIP AGARHIQVEE BACU001930/1-1063 MKADDKCGVC GGDNSHCRTV KGTLGKASKQ AGALKLVQIP AGARHIQVEE ENSTTRP00000007205/1-1227 MKADDKCGVC GGDNSHCRTV KGTLGKASKQ AGALKLVQIP AGARHIQVEE 751 800 ENSP00000362304/1-1226 LEKSPHRIVV KNQVTGSFIL NPKGKEATSR TFTAMGLEWE DAVEDAKESL ENSBTAP00000028224/1-1216 LEKVPHHIAV KNQVTGSFIL NPKGKEATSR TFTAMGLEWE YVVEDAKESL bmy_16722T0/1-869 LEKVPHHIAV KNQVTGSFIL NPKGKEATSR TFTAMGLEWE YVVEDAKESL BACU001930/1-1063 LEKVPHHIAV KNQVTGSFIL NPKGKEATSR TFTAMGLEWE YVVEDAKESL ENSTTRP00000007205/1-1227 LEKVPHHIAV KNQVTGSFIL NPKGKEPTSR TFTAMGLEWE YAVEDAKESL 801 850 ENSP00000362304/1-1226 KTSGPLPEAI AILALPPTEG GPRSSLAYKY VIHEDLLPLI GSNNVLLEEM ENSBTAP00000028224/1-1216 KTSGPLPEAV TVLVLPPAES GPRSSLAYKY IIHEDLLPLI GSNNVLLEET bmy_16722T0/1-869 KTSGPLPEAI AVLVLPPAEG GPRSSLAYKY VIHEDLLPLI GSNNVLLEET BACU001930/1-1063 KTSGPLPEAI AILVLPPAEG GPRSSLAYKY VIHEDLLPLI GSNNVLLEET ENSTTRP00000007205/1-1227 KTSGPLPEAI AVLVLPPAEG GPRSSLAYKY VIHEDLLPLI GSNNVLLEET 851 900 ENSP00000362304/1-1226 DTYEWALKSW APCSKACGGG IQFTKYGCRR RRDHHMVQRH LCDHKKRPKP ENSBTAP00000028224/1-1216 DTYEWALKSW APCTKACGGG IQFTKYGCRR RRDHHMVQRH LCDHRKRPKP bmy_16722T0/1-869 DTYEWALKNW APCTKACGGG IQFTKYGCRR RRDHHMVQRH LCDHRKRPKP BACU001930/1-1063 DTYEWALKNW APCTKTCGGG IQFTKYGCRR RRDHHLVQRH LCDHRKRPKP ENSTTRP00000007205/1-1227 DTYEWALKNW APCTKACGGG IQFTKYGCRR RRDHHMVQRH LCDHRKRPKP 901 950 ENSP00000362304/1-1226 IRRRCNQHPC SQPVWVTEEW GACSRSCGKL GVQTRGIQCL LPLSNGTHKV ENSBTAP00000028224/1-1216 IRRRCNQHAC AQPGWVTEEW GTCSRSCGKL GVQTRGVQCL LPLTNGTHKA bmy_16722T0/1-869 IRRRCNQHPC AQPAWVTEEW GACSRSCGKL GMQTRGVQCL LPLSNGTHKA BACU001930/1-1063 IRRRCNQHPC AQPAWVTEEW SACSRSCGKL GVQTRGVQCL LPLSNGTHKA ENSTTRP00000007205/1-1227 IRRRCNQHPC AQPAWMTEEW GTCSRSCGKL GVQTRGVQCL LPLPNGTHKA 951 1000 ENSP00000362304/1-1226 MPAKACAGDR PEARRPCLRV PCPAQWRLGA WSQCSATCGE GIQQRQVVCR ENSBTAP00000028224/1-1216 MPAKACPGER PEARRPCLRV PCPLQWRTGA WSQCSVTCGE GIQQRQVVCR bmy_16722T0/1-869 MPAKACPGDR PEARRPCHRV PCPAQWRTGA WSQDEA---- ---------- BACU001930/1-1063 MPAKACPGDR PEARRPCHRV PCPAQWRTGA WSQCSVTCGE GVQLRQVVCR ENSTTRP00000007205/1-1227 MPAKACPGDR PEARRPCHRV PCPAQWRTGA WSQCSVTCGE GVQLRQVVCR 1001 1050 ENSP00000362304/1-1226 TNANSLGHCE GDRPDTVQVC SLPACGGNHQ NSTVRADVWE LGTPEGQWVP ENSBTAP00000028224/1-1216 TNANSLGQCE GAKPDMVQAC SLPACGGNLQ NSTVKADVRE LVTPEGQWVP bmy_16722T0/1-869 ---------- ---PQ----- ---------- ---------- ---------- BACU001930/1-1063 ANASSLGQCE GDKPDTVQVC SLPACGGNLQ NSTVRADVRE LVTAEGEWMP ENSTTRP00000007205/1-1227 ANASSLGQCE GDKPDTVQVC SLPACGENLQ NSTVGADVRE LVTPDGEWVP 1051 1100 ENSP00000362304/1-1226 QSEPLHPINK ISSTEPCTGD RSVFCQMEVL DRYCSIPGYH RLCCVSCIKK ENSBTAP00000028224/1-1216 QSGPLDPINK ISSTELCVRD RSIFCQTEEL DRYCSIPGFH RLCCESCTKK bmy_16722T0/1-869 ---------- ---------- -----QQELI SEF------- ---------- BACU001930/1-1063 QSGPLDPINK ISSTEPCVED RSIFCQMEVL DRYCSIPGYH RLCCESCTKK ENSTTRP00000007205/1-1227 QSGPLDPINK ISSTEPCVED RSIFCQMEVL GRYCSIPGYH RLCCESCTTK 1101 1150 ENSP00000362304/1-1226 ASGPNPGPDP GPTSLPPFST PGSPLPGPQD PADAAEPPGK PTGSEDHQHG ENSBTAP00000028224/1-1216 T----LSLDP GLASPPPFST PGSPFSAPVA PPDAVEPSAG PTGSDQRQRD bmy_16722T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU001930/1-1063 ASGPDASPDP SLASPPPFST PGSPFRGPKS PPEAVEPAVG PAGSDDHQHG ENSTTRP00000007205/1-1227 ASGPDVSPDP SLASPPPFST PGSPFRGPKA PPEAVEPTVG PAGSDGRQHG 1151 1200 ENSP00000362304/1-1226 RATQLPGALD TSSPGTQHPF APETPIPGAS WSISPTTPGG LPWGWTQTPT ENSBTAP00000028224/1-1216 QPTPLPGPLG TSAPVTQSYF APQKPTPTAF RGTSPSAP-- --WGWTGAPT bmy_16722T0/1-869 ---------- ---------- ---------- ---SPSDPRS ---------- BACU001930/1-1063 RPTQLPGPLG TSSPVSQRRF AAQKLNPTVF WGTSPSAPRG LPWGWAGAPT ENSTTRP00000007205/1-1227 RATQLPGPLG TSSPVSQRRF AAQKWNPTVF WGTSPSAPRG LPWGWAGAPT 1201 1250 ENSP00000362304/1-1226 PVPEDKGQPG EDLRHPGTSL PAASPVT ENSBTAP00000028224/1-1216 PASENKGLLR EDPKHSGTSL PSTAPVT bmy_16722T0/1-869 ---------- ---------- ------- BACU001930/1-1063 PVSEDKGQLR EDPKHPGPSL PTTPPGT ENSTTRP00000007205/1-1227 PVSEDKGQLR EDPKHPGTSL PTTSPVT