KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:19 2014 Check: 00 .. Name: ENSP00000302530/1-1085 Len: 1095 Check: 4721 Weight: 1.00 Name: ENSBTAP00000028226/1-1078 Len: 1095 Check: 2700 Weight: 1.00 Name: BACU017739/1-1000 Len: 1095 Check: 328 Weight: 1.00 Name: bmy_08328T0/1-566 Len: 1095 Check: 9784 Weight: 1.00 Name: ENSTTRP00000002897/1-1083 Len: 1095 Check: 4976 Weight: 1.00 // 1 50 ENSP00000302530/1-1085 MDTPENVLQM LEAHMQSYKG NDPLGEWERY IQWVEENFPE NKEYLITLLE ENSBTAP00000028226/1-1078 MDNPENVFQM FEAHMQSYKG DDPLGEWESY MQWVEENFPE NKEYLTTLLE BACU017739/1-1000 ---------M FEAHMQSYKG DDPLGEWESY MRWVEENFPE NKEYLTTLLE bmy_08328T0/1-566 MDNPENVFQM FEAHMQSYKG DDPLGEWESY MRWVEENFPE NKEYLTTLLE ENSTTRP00000002897/1-1083 MDNPENVFQM FEAHMQSYKG DDPLGEWESY IRWVEENFPE NKEYMTTLLE 51 100 ENSP00000302530/1-1085 HLMKEFLDKK KYHNDPRFIS YCLKFAEYNS DLHQFFEFLY NHGIGTLSSP ENSBTAP00000028226/1-1078 HLMKEFLDKK RYHNDPRFIN YCLQFAKCNS DLHQFFEFLY NHGIGTQAAP BACU017739/1-1000 HLMKEFLDKK RYHNDPRFIN YCLKFAECNS DLHQFFEFLY NHGIGTLSAP bmy_08328T0/1-566 HLMKEFLDKK RYHNDPRFIN YCLKFAERNS DLHQFFEFLY NHGIGTLSAP ENSTTRP00000002897/1-1083 HLMKEFLDKK RYHNDPRFIN YCLKFAEYNS DLPQFFEFLY NHGIGTLSAP 101 150 ENSP00000302530/1-1085 LYIAWAGHLE AQGELQHASA VLQRGIQNQA EPREFLQQQY RLFQTRLTET ENSBTAP00000028226/1-1078 LYVAWAGHLE AQGERQHANA VFRRGIQNQA EPRELLQQQY RMFQTRLTET BACU017739/1-1000 LYVAWAGHLE GQGERQHASA IFRRGIQNQA EPRELLQQQY RLFQTRLTET bmy_08328T0/1-566 LYVAWAGHLE GQGERQHASA IFRRGIQNQA EPRELLQQQY R--------- ENSTTRP00000002897/1-1083 LYVAWAGHLE GQGERQHASA VFRRGIQNEA EPRELLQQQY RLFQTRLTET 151 200 ENSP00000302530/1-1085 HLPAQARTSE PLHNVQVLNQ MITSKSNPGN NMACISKNQG SELSGVISSA ENSBTAP00000028226/1-1078 HLPTQVRTSE PLHDAQILNQ MVTSSSNPGS NPACISKNQG PQLSGATPAA BACU017739/1-1000 HLPTQARTSE PLHNAQIVNQ LVTSKSNPGN NSGCISKNQG SELSGVTSAA bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 HLPTQARTSE PLNNAQILNQ LVTLKSNPGN NSACISKNQG SELSGVTSSA 201 250 ENSP00000302530/1-1085 CDKESNMERR VITISKSEYS VHSSLASKVD VEQVVMYCKE KLIRGESEFS ENSBTAP00000028226/1-1078 GDKG---EQR VITISKSEYS AHPSVADKAD VQQVVMYCKE KLIRGESEFS BACU017739/1-1000 CDKE------ ---------- --------SN MQQVVMYCKE KLIRGESEFS bmy_08328T0/1-566 -------EQR VIMISKSGYS AHPPVAAKAD VQQVVMYCKE KLIRGESEFS ENSTTRP00000002897/1-1083 CDKESNMEQR VIMISKSGYS AHPPVAAKAD VQQVVMYCKE KLIRGESEFS 251 300 ENSP00000302530/1-1085 FEELRAQKYN QRRKHEQWVN EDRHYMKRKE ANAFEEQLLK QKMDELHKKL ENSBTAP00000028226/1-1078 FEELRAQKYN LRRKHEQWVN EERHYMKRKE ANALEEQLLK QKMDELHKKL BACU017739/1-1000 FEELRAQKYN QRRKHEQWVN EDRHYMKRKE ANAFEEQLLK QKMDELHKKL bmy_08328T0/1-566 FEELRAQKYN QRRKHEQWVN EDRHYMKRKE ANAFEEQLLK QKMDELHKKL ENSTTRP00000002897/1-1083 FEELRAQKYN QRRKHEQWVN EDRHYXXXXX XXXXXXXXXX XXXXXXHKKL 301 350 ENSP00000302530/1-1085 HQVVETSHED LPASQERSEV NPARMGPSVG SQQELRAPCL PVTYQQTPVN ENSBTAP00000028226/1-1078 HQVVEMSQEN LPSSQGTSEV SPACLEPHTD SQQELRAPGL PAISQQTSKN BACU017739/1-1000 HQVVETSHEN LPSSQGRSEV SPAGMGPPTG SPQELRAPSL PAVRQQTSEN bmy_08328T0/1-566 HQVVETSHEN LPSSQGRSE- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 HQVVETSHDN LPSSQGRSEV SPARMGPHTG SPQELRAPSL PAVHQQTSKN 351 400 ENSP00000302530/1-1085 MEKNPREAPP VVPPLANAIS AALVSPATSQ SIAPPVPLKA QTVTDSMFAV ENSBTAP00000028226/1-1078 VDEKPREA-S SVPRMANAAT TALVSPAANQ GVACPAPLAG QHVTDAVFSG BACU017739/1-1000 AGEKPGEA-S VVPPMANAVT AALVSPAVTQ SVAPQVPLAA QPVTDAMFTV bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 AGETPEDA-S VVPLMANAVT AALVSPAVTQ SVAPQVPLAA QPVTDAMLTV 401 450 ENSP00000302530/1-1085 ASKDAGCVNK STHEFKPQSG AEIKEGCETH KVANTSSFHT TPNTSLGMVQ ENSBTAP00000028226/1-1078 GSRDARCVNK STHEFRPQSG AELKEGCETQ KVVNTSSFHT TPNTSLGLVQ BACU017739/1-1000 ASKDARCMNK STHEFKPHSG AEIKEGCETQ KVVNTSSFHT TPNTSLGLVQ bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 ASKDARCMNK STHDFKPQSG AEIKEGCETQ KVVNTSSFHT TPNTSLGLVQ 451 500 ENSP00000302530/1-1085 ATPSKVQPSP TVHTKEALGF IMNMFQAPTL PDISDDKDEW QSLDQNEDAF ENSBTAP00000028226/1-1078 ATPSKAQPSP TVHTKEALGF IMNMFQAPTL PDISDDKEEW PSLSQNE--F BACU017739/1-1000 ATPSKVQPSP TVHTKEALGF IMNMFQAPTL PDVSDDKDEW PSLGQNEDAF bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 ATPSKVQPSP TVHTKEALGF IMNMFQAPTL PDVSDDKDEW PSLGQNEDAF 501 550 ENSP00000302530/1-1085 EAQFQKNVRS SGAWGVNKII SSLSSAFHVF EDGNKENYGL PQPKNKPTGA ENSBTAP00000028226/1-1078 EAQFQKNAPS SGAWGVNKII SSLSSAFPVF EDGNKENYGL PQLKNKPAGA BACU017739/1-1000 EAQFQKNATS SGAWGVNKII SSLSTAFPVF EDGNKENYGL PQPKNKPTGA bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 EAQFQKNATS SGAWGVNKII SSLSSAFPVF EDGNKENYGL PQPKNKPTGA 551 600 ENSP00000302530/1-1085 RTFGERSVSR LPSKPKEEVP HAEEFLDDST VWGIRCNKTL APSPKSPGDF ENSBTAP00000028226/1-1078 RTFGERSVSR FPAKP-NEVP HTDEFLDDST VWGVRCNKSL APSPKSPGDF BACU017739/1-1000 RTFGERSMWR FPSKP-NEVP HTDEFLDDST VWGVRCNKTL APSPKSPGDF bmy_08328T0/1-566 ---------- -------EVP HTDEFLDDST VWGVRCNKTL APSPKSPEDF ENSTTRP00000002897/1-1083 RTFGERSMWR FTSKP-NEVP HTDEFLDDST VWGVRCNKTL APSPKSPGDF 601 650 ENSP00000302530/1-1085 TSAAQLASTP FHKLPVESVH ILEDKENVVA KQCTQATLDS CEENMVVPSR ENSBTAP00000028226/1-1078 RSAAQLASTP FHRLPADCVH PPEDKENMVA NQHTRVALDS CERNKVEPLK BACU017739/1-1000 TSAAQLASTP FHRLPVDSVH PLEDKENVVA EQYTHVTLDS CERNKMEPLK bmy_08328T0/1-566 TSAAQLASTP FHRLPVDSVH PLEDKENVVA EQYTHVTLDS CERNKMEPLK ENSTTRP00000002897/1-1083 TSAAQLASTP FHRLPVDSVH PLEDKENVVA EQYTHVTLDS CERNKMEPLK 651 700 ENSP00000302530/1-1085 DGKFSPIQEK SPKQALSSHM YSASLLRLSQ PAAGGVLTCE AELGVEACRL ENSBTAP00000028226/1-1078 ERKCSPVEET SPDPVCPADG PSASLLHLGQ PAV-AVLMSE AEQGLKACKV BACU017739/1-1000 ERKFSPIEEK SPEPAFPTDV SSASLLRLSQ PAA-AVLTSE AERGLKACKL bmy_08328T0/1-566 ERKFSPIEEK SPEPAFPTDV SSASLLRLSQ PAA-AVLTSE AERGLKACKL ENSTTRP00000002897/1-1083 ERKFSPIEEK SSEPAFPTDV SSASLLRLSQ PAA-AVLTSE AEWGLKACKL 701 750 ENSP00000302530/1-1085 TDTDAAIAED PPDAIAGLQA EWMQMSSLGT VDAPNFIVGN PWDDKLIFKL ENSBTAP00000028226/1-1078 TDPDFATAED PAEASAELQA ELMPAGPLGN VDAPNFTVEN PWDEELILKL BACU017739/1-1000 TDPDFAPTED PADANARFQA EPMQTGLLGN IDAPDFPVEN PWDDELIVKL bmy_08328T0/1-566 TDPDFAPAED PADXNARFQA EPMQTGLXGN IDAPDFTVEN PWDDELIVKL ENSTTRP00000002897/1-1083 TDPDFAPAED PADANARFQA EPMQTGLLGN IDAPDFTVEN PWDDELIVKL 751 800 ENSP00000302530/1-1085 LSGLSKPVSS YPNTFEWQCK LPAIKPKTEF QLGSKLVYVH HLLGEGAFAQ ENSBTAP00000028226/1-1078 LSGLSKPVSS YPNTYEWPCK LPAIKPKTEF QLGSLLVYVD HFIGQGAFAQ BACU017739/1-1000 LSGLSKPVSS YPNTYEWQCK LPAVKPKTEF QLGSLLVYVD HLLGEGAFAH bmy_08328T0/1-566 LSGLSKP--- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 LSGLSKPVSS YANTYEWQCK LPAIKPKTEF QLGSLLVYVD HLLGEGAFAH 801 850 ENSP00000302530/1-1085 VYEATQGDLN DAKNKQKFVL KVQKPANPWE FYIGTQLMER LKPSMQHMFM ENSBTAP00000028226/1-1078 VYEVTHGDVN NSKNKEKFAL KVQKPPNLWE FYIGTQLMER LKPSMQHMFI BACU017739/1-1000 VYEVTHGDVN DSKKKQKFVL KVQKPANPWE FYIGTQLMER LKPSMRHMFI bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 VYEVTHGDVN DSKNKQKFVL KVQKPANPWE FYIGTQLMER LKPSMQHMFI 851 900 ENSP00000302530/1-1085 KFYSAHLFQN GSVLVGELYS YGTLLNAINL YKNTPEKVMP QGLVISFAMR ENSBTAP00000028226/1-1078 KFYSAHLFQN GSVLVGDLYS YGTLLNAINL YKNTPEKVMP QALVLAFAIR BACU017739/1-1000 KFYSAHLFQN GSVLVGDLYS YGTLL----- ---------- ---------- bmy_08328T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002897/1-1083 KFYSAHLFQN GSVLVGDLYS YGTLLNAINL YKNTPEKVMP QALVLAFAIR 901 950 ENSP00000302530/1-1085 MLYMIEQVHD CEIIHGDIKP DNFILGNGFL EQD-DEDDLS AGLALIDLGQ ENSBTAP00000028226/1-1078 MLCMIQQVHD CEIIHGDIKP DNFILGNRFL EQDNKDDDLS NGLVLIDLGQ BACU017739/1-1000 ---------- ---------- ---------- --DGEDDDLS AGLALIDLGQ bmy_08328T0/1-566 ---------- ---------- ---------- --DSEDDDLS AGLALIDLGQ ENSTTRP00000002897/1-1083 VLCMIEQVHD CEIIHGDIKP DNFILGNRFL EQDSEEDDLS AGLALIDLGQ 951 1000 ENSP00000302530/1-1085 SIDMKLFPKG TIFTAKCETS GFQCVEMLSN KPWNYQIDYF GVAATVYCML ENSBTAP00000028226/1-1078 SIDMKLFPKG TAFTGKCETS GFQCIEMLSN KPWNYQIDYF GVAATIYCML BACU017739/1-1000 SIDMKLFPKG TAFTAKCETS GFQCIEMLSN KPWNYQIDYF GVAATVYCML bmy_08328T0/1-566 SIDMKLFPKG TAFTAKCETS GFQCIEMLSN KPWNYQIDYF GVAATVYCML ENSTTRP00000002897/1-1083 SIDMKLFPKG TVFTAKCETS GFQCTEMLSN KPWNYQIDYF GVAATVYCML 1001 1050 ENSP00000302530/1-1085 FGTYMKVKNE GGECKPEGLF RRLPHL-DMW NEFFHVMLNI PDCHHLPSLD ENSBTAP00000028226/1-1078 FGTYMKVKNE GGIWKPEGLF RRLPHL-DMW NEFFHIMLNI PDCHHLPSLD BACU017739/1-1000 FGTYMKVKNE GGVWKPEGLF RSSYHTQDTL HAIHTNNLNL TSAISALLLP bmy_08328T0/1-566 FGTYMKVKNE GGVWKPEGLF RR-------- ---------- ---------- ENSTTRP00000002897/1-1083 FGTYMKVKNE GGVWKPEGLF RRLPHL-DMW NEFFHIMLNI PDCHHLPSLD 1051 1100 ENSP00000302530/1-1085 LLRQKLKKVF QQHYTNKIRA LRNRLI---- ----VLLLEC KRSRK ENSBTAP00000028226/1-1078 LLRQKLKKTF QEHYTSKIKT LCNRLI---- ----VLLLEY KRSRK BACU017739/1-1000 IWCPVYAKGP S--YINFTDF LSNSLVPREE GSIQMKEVAL STSGK bmy_08328T0/1-566 ---QKLKKVF QEHYTNKIKT LRNRLI---- ----VLLLEY KRSRK ENSTTRP00000002897/1-1083 LLRQKLKKVF QEHYTNKIKT LRNRLI---- ----VLLLEY KRSRK