KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:20 2014 Check: 00 .. Name: ENSP00000355583/1-1036 Len: 1170 Check: 5483 Weight: 1.00 Name: ENSBTAP00000028227/1-1050 Len: 1170 Check: 1498 Weight: 1.00 Name: ENSTTRP00000012364/1-854 Len: 1170 Check: 9709 Weight: 1.00 Name: bmy_15206T0/1-872 Len: 1170 Check: 1360 Weight: 1.00 Name: BACU005003/1-797 Len: 1170 Check: 528 Weight: 1.00 // 1 50 ENSP00000355583/1-1036 MALRGAAGAT DTPVSSAGGA PGGSASSSST SSGGSASAGA GLWAALYDYE ENSBTAP00000028227/1-1050 ---------- ---------- ---------- ---------- --WAALYDYE ENSTTRP00000012364/1-854 ---------- ---------- ---------- ---------- ---------- bmy_15206T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU005003/1-797 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000355583/1-1036 ARGEDELSLR RGQLVEVLSQ DAAVSGDEGW WAGQVQRRLG IFPANYVAPC ENSBTAP00000028227/1-1050 ARGEDELSLR RGQLVEVLSQ DAAVSGDEGW WAGQVQRRLG IFPANYVAPC ENSTTRP00000012364/1-854 ---------- ---------- ---------- ---------- ---------- bmy_15206T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU005003/1-797 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000355583/1-1036 RPAASPAP-- ---PPSRPSS PVHVAFERLE LKELIGAGGF GQVYRATWQG ENSBTAP00000028227/1-1050 RPAAHRTPQP ARQPPPRPGS PVHVDFERLE LKELIGAGGF GQVYRATWQG ENSTTRP00000012364/1-854 ---------- ---------- ---------- ---------- ---------- bmy_15206T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU005003/1-797 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000355583/1-1036 QEVAVKAARQ DPEQDAAAAA ESVRREARLF AMLRHPNIIE LRGVCLQQPH ENSBTAP00000028227/1-1050 QEVAVKAARC DPEQDAAAAA ESVRREARLF SMLRHPNIIE LRGVCLRQPH ENSTTRP00000012364/1-854 ---------- ---------- ---------- --------IE LRDVC-RQPH bmy_15206T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU005003/1-797 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000355583/1-1036 LCLVLEFARG GALNRALAAA NAAPDPRAPG PRRARRIPPH VLVNWAVQIA ENSBTAP00000028227/1-1050 LCLVLEFARG GALNRALAAA NATPDPRAPS PRRARRIPPH VLVNWAVQIA ENSTTRP00000012364/1-854 LCLVLEFARG GALNRALAAA NAAPDPRVPG PRRARRIPPH VLVNWAVQIA bmy_15206T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU005003/1-797 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000355583/1-1036 RGMLYLHEEA FVPILHRDLK SSN------- ---------- ---------- ENSBTAP00000028227/1-1050 RGMLYLHEEA VVPILHRDLK SSN------- ---------- ---------- ENSTTRP00000012364/1-854 RSMLYLHEEA VVPILHRDLK SSN------- ---------- ---------- bmy_15206T0/1-872 --MLYLHEEA VVPILHRDLK SSNKGENEIP KANGLEGRLT VSAAVQRIQG BACU005003/1-797 --MLYLHEEA VVPILHRDLK SSN------- ---------- ---------- 301 350 ENSP00000355583/1-1036 ---------- ---------- ---------- ---------- ---ILLLEKI ENSBTAP00000028227/1-1050 ---------- ---------- ---------- ---------- ---ILLLEKI ENSTTRP00000012364/1-854 ---------- ---------- ---------- ---------- ---ILLLEKI bmy_15206T0/1-872 WCPVASVGNG GQYSPKHSVE KTLHLDQDLI SWKKNNVNIF FLSVLLLEKI BACU005003/1-797 ---------- ---------- ---------- ---------- ---ILLLEKI 351 400 ENSP00000355583/1-1036 EHDDICNKTL KITDFGLARE WHRTTKMSTA GTYAWMAPEV IKSSLFSKGS ENSBTAP00000028227/1-1050 EHDDICNKTL KITDFGLARE WHRTTRMSAA GTYAWMAPEV IKSSLFSKGS ENSTTRP00000012364/1-854 EHDDVCNKTL KITDFGLARE WHRTTRMSAA GTYAWMAPEV IKSSLFSKGS bmy_15206T0/1-872 EHDDVCNKTL KITDFGLARE WHRTTRMSAA GTYAWMAPEV IKSSLFSKGS BACU005003/1-797 EHDDVCNKTL KITDFGLARE WHRTTRMSAA GTYAWMAPEV IKSSLFSKGS 401 450 ENSP00000355583/1-1036 DIWSYGVLLW ELLTGEVPYR GIDGLAVAYG VAVNKLTLPI PSTCPEPFAK ENSBTAP00000028227/1-1050 DIWSYGVVLW ELLTGEVPYR GIDGLAVAYG VAVNKLTLPI PSTCPEPFAK ENSTTRP00000012364/1-854 DIWSYGVVLW ELLTGEVPYR GIDGLAVAYG VAVNKLTLPI PSTCPEPFAK bmy_15206T0/1-872 DIWSYGVVLW ELLTGEVPYR GIDGLAVAYG VAVNKLTLPI PSTCPEPFAK BACU005003/1-797 DIWSYGVVLW ELLTGEVPYR GIDGLAVAYG VAVNKLTLPI PSTCPEPFAK 451 500 ENSP00000355583/1-1036 LMKECWQQDP HIRPSFALIL EQLTAIEGAV MTEMPQESFH SMQDDWKLEI ENSBTAP00000028227/1-1050 LMKECWQQDP HIRPSFASIL EQLTEIEKAV MTEMPQESFH SMQDDWKLEI ENSTTRP00000012364/1-854 LMKECWQQDP HIRPSFALIL EQLTAIEKAV MTEMPQESFH SMQDDWKLEI bmy_15206T0/1-872 LMKECWQQDP HIRPSFALIL EQLTAIEKAV MTEMPQESFH SMQDDWKLEI BACU005003/1-797 LMKECWQQDP HIRPSFALIL EELTAIEKAV MTEMPQESFH SMQDDWKLEI 501 550 ENSP00000355583/1-1036 QQMFDELRTK EKELRSREEE LTRAALQQKS QEELLKRREQ -----QLAER ENSBTAP00000028227/1-1050 QQMFDELRTK EKELRSREEE LTRAALQQKS QEELLRRREQ -----QLAAR ENSTTRP00000012364/1-854 QQMFDELRTK EKELRSREEE LTRAALQQKS QEELLRRREQ -----QLAAR bmy_15206T0/1-872 QQMFDELRTK EKRGRREPCV SVRVPDVPGS GGPVLAAGGA VGGTCSGRAG BACU005003/1-797 QQMFDELRTK EKELRSREEE LTRAALQQKS QEELLRRREQ -----QLAAR 551 600 ENSP00000355583/1-1036 EIDVLERELN ILIFQLNQEK PKVKKRKGKF KRSRLKLKDG HRISLPSDFQ ENSBTAP00000028227/1-1050 EIDVLERELN ILIFQLNQEK PNVKKRKGKF KRSRLKLRDG HRISLPSDFQ ENSTTRP00000012364/1-854 EIDVLERELX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXFQ bmy_15206T0/1-872 EIDVLERELN ILIFQLSQER PNVKKRKGKF KRSRLKLKDG RRISLPSDFQ BACU005003/1-797 EIDVLERELN ILIFQLSQER PNVKKRKGKF KRSRLKLKDG RRISLPSDFQ 601 650 ENSP00000355583/1-1036 HKITVQASPN LDKRRSLNSS SSSPPSSPTM MPRLRAIQLT SDESNKTWGR ENSBTAP00000028227/1-1050 HKITVQASPN LDKRRSLNSS SSSPPSSPTV IPRLRAIQLT SDESNKTWGR ENSTTRP00000012364/1-854 HKITVQASPN LDKRRSLNSS SFSTPSSPTV IPRLRAIQLT SDESNKTWGR bmy_15206T0/1-872 HKITVQASPN LDKRRSLNSS SFSTPSSPTV IPRLRAIQLT SDESNKTWGR BACU005003/1-797 HKITVQASPN LDKRRSLNSS SFSTPSSPTV IPRLRAIQLT SDESNKTWGR 651 700 ENSP00000355583/1-1036 NTVFRQEEFE DVKRNFKKKG CTWGPNSIQM KDRTDCKER- ---------- ENSBTAP00000028227/1-1050 NTVCRQEEFE DIKRNFKKKG CTWGPNSIQM KERTDGRESS LKHRMCSPHR ENSTTRP00000012364/1-854 NMVCRQEEFE DVKRNFKKKG CTWGPNSIQM KERTDCKER- ---------- bmy_15206T0/1-872 NTVCRQEEFE DVKRSFKKKG CTWGPNSIQM KERTDCKER- ---------- BACU005003/1-797 NTVCRQEEFE DVKRSFKKKG CTWGPNSIQM KERTDCKER- ---------- 701 750 ENSP00000355583/1-1036 ---------- --IRPLSDGN SPWSTIL--- ---IKNQKTM PLASLFVDQP ENSBTAP00000028227/1-1050 IQMCSLYYLK ILIRPLSDGN SPWSTIAPHC LLGICNSDSL PENSSLL--- ENSTTRP00000012364/1-854 ---------- --IRPLSDGN SPWSTIL--- ---IKNQKTM PLASLFVDQS bmy_15206T0/1-872 ---------- --IRPLSDGN SPWSTIL--- ---IKNQKTM PLASLFVDQS BACU005003/1-797 ---------- --IRPLSDGN SPWSTIL--- ---IKNQKTM PLASLFVDQS 751 800 ENSP00000355583/1-1036 GSCEEPKLSP DGLEHRKPKQ IKLPSQAYID LPLGKDAQRE NPAEAESWEE ENSBTAP00000028227/1-1050 CACEEPKLAP DGLEHRKPKQ IKSPTQAYID LPLWKDGQRE NPVEPESREE ENSTTRP00000012364/1-854 GACEEPQLAP DGLEHRKPKQ IKSPSQAYID LPLWKDGQRE NLVEPESWEE bmy_15206T0/1-872 GACEEPQLAP DGLEHRKPKQ IKSPSQAYID LPLWKDGQRE NPVEPESWEE BACU005003/1-797 GACEEPQLAP DGLEHRKPKQ IKSPSQAYID LPLWKDGQRE NPVEPESWEE 801 850 ENSP00000355583/1-1036 AASANAATVS IEMTPTNSLS RSPQRKKTES ALYGCTVLLA SVALGLDLRE ENSBTAP00000028227/1-1050 GTPVSPAADT PQGTPPNSLS RSPQRKKTES ALYGCTMLLA SVALGLDIRE ENSTTRP00000012364/1-854 RTPVSPATSI PQGTPPNSLS RSPQRKKTES ALYGCTVLLA SVALGLDIRE bmy_15206T0/1-872 RTPVSPATSI PQGTPPNSLS RSPQRKKTES ALYGCTVLLA SVALGLDIRE BACU005003/1-797 RTPVSSATSI PQGTPPNSLS RSPQRKKTES ALYGCTALLA SVALGLDIRE 851 900 ENSP00000355583/1-1036 LHKAQAAEEP LPKEEKKKRE GIFQRASKSR RSASPPTSLP STCGEASSPP ENSBTAP00000028227/1-1050 LTKAQAPEDP LPKEDRKKRE GIFQRAPKSR RSASPAARLL AVGEGASSTP ENSTTRP00000012364/1-854 LAKAQAAEDP LPKEERRKRE GIFQRAPKSR SSASAATRLP AAGEGTSSPS bmy_15206T0/1-872 LMKAQAAEDP LPKEERKKRE GIFQRVPKSR SSANSATRLP AAGEGASSPS BACU005003/1-797 LAKAQAAEDP LPKEERKKRE GIFQRVPKSR SSANSATRLP AAGEGASSPS 901 950 ENSP00000355583/1-1036 SLPLSSALGI LSTPSFSTKC LLQMDSEDPL VDSAPVTCDS EMLTPDFCPT ENSBTAP00000028227/1-1050 SPPPSTIANL LSVPSLSTKC LLQTDGEDSF ESSTHISCAP RVPTPDPCPA ENSTTRP00000012364/1-854 PPPPSSAANL LSMPSLSTKC LLQTDGEDSF ESSTHVPCDP KVPIPDPCPA bmy_15206T0/1-872 PLPPSSAANL LSMPSLSTKC LLQTDGEDSF GSSTHVPCDP KVPIPDPCPA BACU005003/1-797 LHPLSSAANL LSMPSLSTKC LLQTDGEDSF ESSTHVPCDP KVPIPDPCPA 951 1000 ENSP00000355583/1-1036 APGSGREPAL MPRLDTDCSV SRNLPSSFLQ QTCGNVPYCA SSKHRPSHHR ENSBTAP00000028227/1-1050 FGGRGQKSTP MPGLETSRDG WRNPPPSFME LTRGGVSYAA ASKERAASHR ENSTTRP00000012364/1-854 FGRRDQESTP VPGLETHRGV WGNLSPPFTV PARADASYAA SSKERAARHR bmy_15206T0/1-872 FGRRGQEPTP VPGLETHRGV WGNLSPSFTV PARADASYAA SSKERAAHHR BACU005003/1-797 FGRRGQEPTP VPGLETHRGV WGNLSPSFTF PARAGASYTA SSKERAAHHR 1001 1050 ENSP00000355583/1-1036 RTMSDGNPT- -PT------- ---------G ATIISATGAS ALP------L ENSBTAP00000028227/1-1050 RTMSDGSAPQ PPDASFSMSL SNHTLSLPVG AALISAPGAS ELPSEWVWGM ENSTTRP00000012364/1-854 RTMSDGCASQ PPA------- ---------G AALISAPGAS QLP------- bmy_15206T0/1-872 RTVSDGSASQ PPA------- ---------G AALISAPGAS ELPPEWVWGT BACU005003/1-797 RTVSDGSASQ PPA------- ---------G AALISAPGAS ELPPEWVWGT 1051 1100 ENSP00000355583/1-1036 CPSPA-PHSH LPREVSPKKH STVHIVPQRR PASLRSRSDL PQAYPQTAVS ENSBTAP00000028227/1-1050 PPSLSGPHSD LPSEVPPEKQ RAVHMVPLPH PPPLRSRGGA LQAFPPRAES ENSTTRP00000012364/1-854 CPSPPGPHSD LPSEVPPEKQ RAVHMVPLPR PPHLRSQVGA PKAFPQRTES bmy_15206T0/1-872 APSPSGPHSD LPSEVPPEKQ RAVHVMPLPR PPHLRSQVGA PKAFPQRTES BACU005003/1-797 PPSPSGPHSD LPSEVPPEKQ RAVHVVPLPH PPHFRSQVGA PKAFPQRTES 1101 1150 ENSP00000355583/1-1036 QLAQTACVVG RPGPHPTQFL AAKERTKSHV PSLLDADVEG QSRDYTVPLC ENSBTAP00000028227/1-1050 QPSQAGPAVG GPGPAHSCPL GPKKRTQPHM PSLLDSDVEG QSRDRTVPLC ENSTTRP00000012364/1-854 QPAQACPVVG GPEPAPDCPL GAKERTKPHV PSLLDADVEG QSRDCTVPLC bmy_15206T0/1-872 QPAQACPVVG GPGPAPDCPL GAQERTKPHM PSLLDADVEG QSRDCTVPLC BACU005003/1-797 QPAQACPVVG GPGPAPDCPL GAQERTKPHV PSLLDADVEG QSGDCTVPLC 1151 1200 ENSP00000355583/1-1036 RMRSKTSRPS IYELEKEFLS ENSBTAP00000028227/1-1050 RMRSRASRPS LYELEKEFLS ENSTTRP00000012364/1-854 RLRSRMSRPS LYELEKEFLS bmy_15206T0/1-872 RMR-RTSRPS LYELEKEFLS BACU005003/1-797 RMR-RTSRPS LYELEKEFLS