KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:22 2014 Check: 00 .. Name: bmy_05359T0/1-200 Len: 271 Check: 7910 Weight: 1.00 Name: ENSP00000361338/1-271 Len: 271 Check: 6875 Weight: 1.00 Name: ENSBTAP00000028257/1-271 Len: 271 Check: 7090 Weight: 1.00 Name: ENSTTRP00000003701/1-177 Len: 271 Check: 1435 Weight: 1.00 Name: BACU016203/1-271 Len: 271 Check: 4576 Weight: 1.00 // 1 50 bmy_05359T0/1-200 MPGAQSRARA RDRNNVLNRA EFLSLNQPPK GAPEPRSSGR KASGPSAQPS ENSP00000361338/1-271 MPASQSRARA RDRNNVLNRA EFLSLNQPPK GGPEPRSSGR KASGPSAQPP ENSBTAP00000028257/1-271 MPASQSRARA RDRSNVLNRA EFLSLNQTPK GAPEPRSSGR KASGPSTQPP ENSTTRP00000003701/1-177 ---------- ---------- ---------- ---------- ---------- BACU016203/1-271 MPGAQSRARA RDRNNVLNRA EFLSLNQPPK GAPEPRSAGR KASGASAQPS 51 100 bmy_05359T0/1-200 CPGDGARERR QSQQLPEEDC MQLNPSFKGI AFNSLLAIDI CMSKRLGVCA ENSP00000361338/1-271 PAGDGARERR QSQQLPEEDC MQLNPSFKGI AFNSLLAIDI CMSKRLGVCA ENSBTAP00000028257/1-271 APGDGARERR QSQQLPEEDC MQLNPSFKGI AFNSLLAIDI CMSKRLGVCA ENSTTRP00000003701/1-177 ---------- ---------- ---------- ---------- --SKRLGVCA BACU016203/1-271 CPGDGARERR QSQQLPEEDC MQLNPSFKGI AFNSLLAIDI CMSKRLGVCA 101 150 bmy_05359T0/1-200 GRAASWASAR SMVKLIGITG HGIPWIGGTI LCLVKSSTLA GQEVLMNLLL ENSP00000361338/1-271 GRAASWASAR SMVKLIGITG HGIPWIGGTI LCLVKSSTLA GQEVLMNLLL ENSBTAP00000028257/1-271 GRAASWASAR SMVKLIGITG HGIPWIGGTI LCLVKSSTLA GQEVLMNLLL ENSTTRP00000003701/1-177 GRAASWASAR SMVKLIGITG HGI-WIGGTI LCLVKSSTLA GQEVLM-LLL BACU016203/1-271 GRAASWASAR SMVKLIGITG HGIPWIGGTI LCLVKSSTLA GQEVLMNLLL 151 200 bmy_05359T0/1-200 ---------- ---------G PIAAPPPP-- ---------P AQPRCPAAE- ENSP00000361338/1-271 ALLLDIMTVA GVQKLIKRRG PYETSPSLLD YLTMDIYAFP AGHASRAAMV ENSBTAP00000028257/1-271 ALLLDIMTVA GVQKLIKRRG PFESSPSLLD YLTMDVYAFP AGHASRAAMV ENSTTRP00000003701/1-177 ALLLDIMTVA GVQKLIKRRG PFETSPGLLD YLTMDIYAFP AGHASRAAMV BACU016203/1-271 ALLLDIMTVA GMQKLIKRRG PFETSPSPLD YLTMDIYAFP AGHASRAAMV 201 250 bmy_05359T0/1-200 ---------- -------LVP WSTSQGKQLS VRGHEGSSR- ---------- ENSP00000361338/1-271 SKFFLSHLVL AVPLRVLLVL WALCVGLSRV MIGRHHVTDV LSGFVIGYLQ ENSBTAP00000028257/1-271 SKFFLSHLVL AVPLRVLLVL WALCVGLSRV MIGRHHITDV LFGFAIGYFQ ENSTTRP00000003701/1-177 SKFFLSHLVL AVPLRVLLVL WALCVGLSRV MIGRHHITDV LSGFVIGYFQ BACU016203/1-271 SKFFLSHLVL AVPLRVLLVL WALCVGLSRV MIGRHHITDV LSGFIIGYFQ 251 300 bmy_05359T0/1-200 --------QP PNQAERE--- - ENSP00000361338/1-271 FRLVELVWMP SSTCQMLISA W ENSBTAP00000028257/1-271 FRLVELVWMS SNTCQMLISA W ENSTTRP00000003701/1-177 FRLVELVWMS SNTCQMLISA W BACU016203/1-271 FRLVELVWMS SNTCQMLISA W