KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:35:26 2014  Check: 00 ..

 Name: bmy_03706T0/1-102         Len:    201  Check:  67  Weight:  1.00
 Name: ENSP00000356791/1-201     Len:    201  Check:  746  Weight:  1.00
 Name: BACU004249/1-201          Len:    201  Check:  9894  Weight:  1.00
 Name: ENSBTAP00000028263/1-201  Len:    201  Check:  1130  Weight:  1.00

//


                          1                                                   50
bmy_03706T0/1-102         MDLALLWVLL PLVTVAWGQY DDYGYPYQQY HDYSDDGWVN LYRQGFSYQC 
ENSP00000356791/1-201     MDLSLLWVLL PLVTMAWGQY GDYGYPYQQY HDYSDDGWVN LNRQGFSYQC 
BACU004249/1-201          MDLALLWVLL PLVTVAWGQY DDYAYSYQQY HDYSDDGWVN LNRQGFSYQC 
ENSBTAP00000028263/1-201  MDLTLLWVLL PLVTVAWGQY GDYGYSYHQY HDYSDDGWVN LNRQGFSYQC 


                          51                                                 100
bmy_03706T0/1-102         PHGQVVVAVK SIFSKKEGSD RQWNYACMPT PQSLGEPTEC WWEEINRAGM 
ENSP00000356791/1-201     PQGQVIVAVR SIFSKKEGSD RQWNYACMPT PQSLGEPTEC WWEEINRAGM 
BACU004249/1-201          PHGEVVVAVK SIFNKKEGSD RQWNYACMPT PQSLGEPTEC WWEEINRAGM 
ENSBTAP00000028263/1-201  PHGQVVVAVR SIFNKKEGSD RQWNYACMPT PQSLGEPTEC WWEEINRAGM 


                          101                                                150
bmy_03706T0/1-102         EW-------- ---------- ---------- ---------- ---------- 
ENSP00000356791/1-201     EWYQTCSNNG LVAGFQSRYF ESVLDREWQF YCCRYSKRCP YSCWLTTEYP 
BACU004249/1-201          EWYQTCSNNG LVAGFQSRYF ESVLDREWQF YCCRYSKRCP YSCWLTTEYP 
ENSBTAP00000028263/1-201  EWYQTCSNNG LVAGFQSRYF ESVLDREWQF YCCRYSKRCP YSCWLTTEYP 


                          151                                                200
bmy_03706T0/1-102         ---------- ---------- ---------- ---------- ---------- 
ENSP00000356791/1-201     GHYGEEMDMI SYNYDYYIRG ATTTFSAVER DRQWKFIMCR MTEYDCEFAN 
BACU004249/1-201          GHYGEEMDMI SYNYDHYMRG ATTTFSSVER DRQWKFIMCR MTDYNCEFAN 
ENSBTAP00000028263/1-201  GHYGEEMDMI SYNYDYYMRG ATTTFSAVER DRQWKFIMCR MTDYDCEFAN 


                          201                                                250
bmy_03706T0/1-102         - 
ENSP00000356791/1-201     V 
BACU004249/1-201          V 
ENSBTAP00000028263/1-201  V