KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:29 2014 Check: 00 .. Name: bmy_22220T0/1-815 Len: 1684 Check: 5320 Weight: 1.00 Name: ENSP00000379228/1-1606 Len: 1684 Check: 5691 Weight: 1.00 Name: ENSBTAP00000028268/1-1596 Len: 1684 Check: 2256 Weight: 1.00 Name: ENSTTRP00000008632/1-1580 Len: 1684 Check: 5466 Weight: 1.00 Name: BACU012607/1-824 Len: 1684 Check: 1485 Weight: 1.00 // 1 50 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 MLLHLCS-VK NLYQNRFLGL AAMASPSRNS QSRRRCKEPL RYSYNPDQFH ENSBTAP00000028268/1-1596 PLLTVCLPPQ NLYQNRFLGL AAMASPSRNS QNRRRCKEPL RHSYNPGQYH ENSTTRP00000008632/1-1580 --FQIFL-KE NLYQNRFLGL AAMASPSRNS QNRRRCKEPL RHSYNPGQFH BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_22220T0/1-815 ---------- ---------- ---MEEKRSS TCKAGTGAYE V--------- ENSP00000379228/1-1606 NMDLRGGPHD GVTIPRSTSD TDLVTSDSRS TLMVSSSYYS IGHSQDLVIH ENSBTAP00000028268/1-1596 SVAIRTGPHG AVTIPRSTSD TDLVTSDSRS TLMVSSSYYS IGHSQDLVIH ENSTTRP00000008632/1-1580 SMAIRTGPPG AVTIPRSTSD TDLVTSDSRS TLMVSSSYYN IGHSQDLVIH BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_22220T0/1-815 ---------- QFMEILFIED L--------- ---------- ---------- ENSP00000379228/1-1606 WDIKEEVDAG DWIGMYLIDE VLSENFLDYK NRGVNGSHRG QIIWKIDASS ENSBTAP00000028268/1-1596 WDIKEEVDAG DWIGMYLIDE VLSENFLDYK NRGVNGSHRG QIIWKIDASS ENSTTRP00000008632/1-1580 WDIKEEVDAG DWIGMYLIDE VLSENFLDYK NRGVTGSHRG QIIWKIDASS BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 YFVEPETKIC FKYYHGVSGA LRATTPSVTV KNSAAPIFKS IGADETVQGQ ENSBTAP00000028268/1-1596 YFVEPETKIC FKYYHGVSGA LRATTPSVTV KNSAAPIFKS IGSDETVQGQ ENSTTRP00000008632/1-1580 YFVEPETKIC FKYYHGVSGA LRATTPSVTV KNSAAPIFKS VGSDETVQGQ BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 GSRRLISFSL SDFQAMGLKK GMFFNPDPYL KISIQPGKHS IFPALPHHGQ ENSBTAP00000028268/1-1596 GSRRLISFSL SDFQAMGLKK GMFFNPDPYL KISIQPGKHS IFPALPHHGQ ENSTTRP00000008632/1-1580 GSRRLISFSL SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_22220T0/1-815 ---------- ------PRQF SFVSLPTDVL EIEVKDKFAK SRPIIKRFLG ENSP00000379228/1-1606 ERRSKIIGNT VNPIWQAEQF SFVSLPTDVL EIEVKDKFAK SRPIIKRFLG ENSBTAP00000028268/1-1596 ERRSKIIGNT VNPIWQAEQF SFVSLPTDVL EIEVKDKFAK SRPIIKRFLG ENSTTRP00000008632/1-1580 XXXXXXXXXX XXXXXXXXQF SFVSLPTDVL EIEVKDKFAK SRPIIKRFLG BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_22220T0/1-815 KLSMPVQRLL ERHAIGDRVV SYTLGRRLPT DHVSGQLQFR FEITSSIHP- ENSP00000379228/1-1606 KLSMPVQRLL ERHAIGDRVV SYTLGRRLPT DHVSGQLQFR FEITSSIHP- ENSBTAP00000028268/1-1596 KLSMPVQRLL ERHAIGDRVV SYTLGRRLPT DHVSGQLQFR FEITSSIHP- ENSTTRP00000008632/1-1580 KLSMPVQRLL ERHAIGDRVV SYTLGRRLPT DHVSGQLQFR FEITSSIHPA BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_22220T0/1-815 DDEEISLSTE PQSAEIQDSP MNSLVASSRG EPPCTNAPEP SGTSRPEQLS ENSP00000379228/1-1606 DDEEISLSTE PESAQIQDSP MNNLMESGSG EPRS-EAPES SESWKPEQLG ENSBTAP00000028268/1-1596 DDEEISLSTE PESAEIQDSP MNNLVASSCG EPPC-DAPEP SGTPKPEQPS ENSTTRP00000008632/1-1580 DDEEISLSTE PESAEIQDSP MNNLVASSRG EPPCTNAPEP SGTPGPEQLS BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_22220T0/1-815 QGSAVGPAGN ESLELANPVE AAAGTTEAG- DDGTVCVRPE GAGELPAPWP ENSP00000379228/1-1606 EGSVPDGPGN QSIELSRPAE EAAVITEAG- DQGMVSVGPE GAGELLAQVQ ENSBTAP00000028268/1-1596 QGSTVGPPEI EGLELTSLVE AAAGTTEAGD DDGIVSVGPE GAGELLAPGP ENSTTRP00000008632/1-1580 QGS--GGPGD ESLELANPVE AAAGTTEAG- DDGTVCVRPE AAGELLAPWP BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_22220T0/1-815 EDTEPALSAE ELAERLDLGG EAALPGLLED GRAPGSP-GE PVAKEAATES ENSP00000379228/1-1606 KDIQPAPSAE ELAEQLDLGE EASAL-LLED GEAPASTKEE PLEEEATTQS ENSBTAP00000028268/1-1596 EDTEPALSAE ELAERLDLGG EVALPGMLED GQAPSSP-GE PVAEERATES ENSTTRP00000008632/1-1580 EDTEPALSAE ELAERLDLGG EAALPGLLED GRAPGSP-GE PVAQEAATES BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_22220T0/1-815 RAGGQEEEKE QVEEEEGGVS ALGQGEDRLP LRASVKRKSR PCSLPVSELE ENSP00000379228/1-1606 RAGREEEEKE Q--EEEGDVS TLEQGEGRLQ LRASVKRKSR PCSLPVSELE ENSBTAP00000028268/1-1596 RAGGQEEEKE QMEEEEGDVS ALGQGEDRLH LRASVKRKTR PCSLPVSELE ENSTTRP00000008632/1-1580 RAGGQE---- ---------- -----EDRLQ LRASVKRKSR PCSLPVSELE BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_22220T0/1-815 TVIASACGEP ETP------- ---------- ---------- ---------- ENSP00000379228/1-1606 TVIASACGDP ETP------- ---------- ---------- ---------- ENSBTAP00000028268/1-1596 TVIASACGEP ETP------- ---------- ---------- ---------- ENSTTRP00000008632/1-1580 TVIASACGEP ETPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_22220T0/1-815 ---------- ---------- -------RTH YIRIHTLLHS LPSAQGGSA- ENSP00000379228/1-1606 ---------- ---------- -------RTH YIRIHTLLHS MPSAQGGSAA ENSBTAP00000028268/1-1596 ---------- ---------- -------RTH YIRIHTLLHS LPSAQGGSAD ENSTTRP00000008632/1-1580 XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ---------- ---------- BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_22220T0/1-815 -DDGGAEEEA TLKDASEKEA LSEVDTVAAE PPPLEEDGEA PEGATPGTAP ENSP00000379228/1-1606 EEEDGAEEES TLKDSSEKDG LSEVDTVAAD PSALEEDREE PEGATPGTAH ENSBTAP00000028268/1-1596 DDDDGAEEEA TLKDASEKDA LSEMDTVAAE PPPLEEDGEA PEGATPGTAP ENSTTRP00000008632/1-1580 ---------- ---------- ---------- ---------- --GPTPGTAP BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_22220T0/1-815 PGRSG----- LANGSVPDGD TLPSTGSESD SSPRQGGDHS CEGCDASCCS ENSP00000379228/1-1606 PGHSGGHFPS LANGAAQDGD THPSTGSESD SSPRQGGDHS CEGCDASCCS ENSBTAP00000028268/1-1596 LGHSG----- LANGSAPDGD ALPSTGSESD SSPRQGGDHS C--CDASCCS ENSTTRP00000008632/1-1580 PGHSG----- LANGSVPGGD TLPSTGSESD SSPRQGG-HS CEGCDA-CCS BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_22220T0/1-815 PSCYSSSCYS TSCYSSSCYS SSCYSASCYS PSCYNGSRFA SHTRFSSVDS ENSP00000379228/1-1606 P-----SCYS SSCYSTSCYS SSCYSASCYS PSCYNGNRFA SHTRFSSVDS ENSBTAP00000028268/1-1596 P--------- -SCYSSSCYS SSCYSASCYS PSCYNGSRFA SHTRFSSVDS ENSTTRP00000008632/1-1580 P-----SCYS TS-YSSSCYS SSCYSASCYS PSCYNGSRFA SHTRFSSVDS BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_22220T0/1-815 AKISESTVFS SQDDDEEEEN SAFESVPDSV QSPELEPESA NGAG-WQDES ENSP00000379228/1-1606 AKISESTVFS SQ-DDEEEEN SAFESVPDSM QSPELDPEST NGAGPWQDEL ENSBTAP00000028268/1-1596 AKISESTVFS SQ-DDEEEEN SAFESVPDSV QSPELDQESA NGAGPWQDEL ENSTTRP00000008632/1-1580 AKISESTVFS SQDDDEEEEN SAFESVPDSV QSPELEPESA KGAG-WQDES BACU012607/1-824 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_22220T0/1-815 AAPTGSVART VEGLESPVAG PSSRREGECP ILHNSQPVSQ LPSLRPEHHH ENSP00000379228/1-1606 AAPSGHVERS PEGLESPVAG PSNRREGECP ILHNSQPVSQ LPSLRPEHHH ENSBTAP00000028268/1-1596 AAPDGSMART MEGLESPVAG PSSRREGECP ILHNSQPVSQ LPSLRPEHHH ENSTTRP00000008632/1-1580 AAATGSVART VEGLESPVAG PSSRREGECP ILHNSQPVSQ LPSLRPEHHH BACU012607/1-824 ---------- MEGLESPVAG PSSRREGECP ILHNSQPVSQ LPSLRPEHHH 901 950 bmy_22220T0/1-815 YPTIDEPLPP NWEARIDSHG RVFYVDHVNR TTTWQRPTSA ATPDGMRRSG ENSP00000379228/1-1606 YPTIDEPLPP NWEARIDSHG RVFYVDHVNR TTTWQRPTAA ATPDGMRRSG ENSBTAP00000028268/1-1596 YPTIDEPLPP NWEARIDSHG RVFYVDHVNR TTTWQRPTAA ATPDGMRRSG ENSTTRP00000008632/1-1580 YPTIDEPLPP NWEARIDSHG RVFYVDHVNR TTTWQRPTSA ATPDGMRRSG BACU012607/1-824 YPTIDEPLPP NWEARIDSHG RVFYVDHVNR TTTWQRPTSA ATPDGMRRSG 951 1000 bmy_22220T0/1-815 SIQQMEQLNR RYQNIQRTIA TERPEEDSGS QSCEQVPAGG GGGGGGSDSE ENSP00000379228/1-1606 SIQQMEQLNR RYQNIQRTIA TERSEEDSGS QSCEQAPAGG -GGGGGSDSE ENSBTAP00000028268/1-1596 SIQQMEQLNR RYQNIQRTIA TERPEEDSGS QICDPVPAGG -GGGGGSDSE ENSTTRP00000008632/1-1580 SIQQMEQLNR RYQNIQRTIA TERPEEDSGS QSCEQVPAGG NGGGGGSDSE BACU012607/1-824 SIQQMEQLNR RYQNIQRTIA TERTEEDSGS QSCEQVPAGG GGGGGGSDSE 1001 1050 bmy_22220T0/1-815 AEYSQSNIDL RRDGSLSPVN SQKITLLLQS PAVKFITNPE FFTVLHANYS ENSP00000379228/1-1606 AESSQSSLDL RREGSLSPVN SQKITLLLQS PAVKFITNPE FFTVLHANYS ENSBTAP00000028268/1-1596 AES--SSLDL RRDGSLSPVN SQKITLLLQS PAVKFITNPE FFTVLHANYS ENSTTRP00000008632/1-1580 AETSQSSIDL RRDGSLSPVN SQKITLLLQS PAVKFITNPE FFTVLHANYS BACU012607/1-824 AESSQSSIDL RRDGSLSPVN SQKITLLLQS PAVKFITNPE FFTVLHANYS 1051 1100 bmy_22220T0/1-815 AYRVFTSSTC LKHMILKVRR DARNFERYQH NRDLVNFINM FADTRLELPR ENSP00000379228/1-1606 AYRVFTSSTC LKHMILKVRR DARNFERYQH NRDLVNFINM FADTRLELPR ENSBTAP00000028268/1-1596 AYRVFTSSTC LKHMILKVRR DARNFERYQH NRDLVNFINM FADTRLELPR ENSTTRP00000008632/1-1580 AYRVFTSSTC LKHMILKVRR DARNFERYQH NRDLVNFINM FADTRLELPR BACU012607/1-824 AYRVFTSSTC LKHMILKVRR DARNFERYQH NRDLVNFINM FADTRLELPR 1101 1150 bmy_22220T0/1-815 GWEIKTDQQG ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 GWEIKTDQQG KSFFVDHNSR ATTFIDPRIP LQNGRLPNHL THRQHLQRLR ENSBTAP00000028268/1-1596 GWEIKTDQQG KSFFVDHNSR ATTFIDPRIP LQNGRLPNHL THRQHLQRLR ENSTTRP00000008632/1-1580 GWEVKTDQQG KSFFVDHNSR ATTFIDPRIP LQNGRLPNHL THRQHLQRLR BACU012607/1-824 GWEIKTDQQG KSFFVDHNSR ATTFIDPRIP LQNGRLPNHL THRQHLQRLR 1151 1200 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 SYSAGEASEV SRNRGASLLA RPGHSLVAAI RSQHQHESLP LAYNDKIVAF ENSBTAP00000028268/1-1596 SYSAGEASEV SRNRGASLLA RPGHSLVAAI RSQHQHDSLP LAYNDKIVAF ENSTTRP00000008632/1-1580 SYSAGEASEV SRNRGASLLA RPGHSLVAAI RSQHQHESLP LAYNDKIVAF BACU012607/1-824 SYSAGEASEV SRNRGASLLV RPGHSLVAAI RSQHQHESLP LAYNDKIVAF 1201 1250 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 LRQPNIFEML QERQPSLARN HTLREKIHYI RTEGNHGLEK LSCDADLVIL ENSBTAP00000028268/1-1596 LRQPNIFEML QERQPSLARN HTLREKIHYI RTEGNHGLEK LSCDADLVIL ENSTTRP00000008632/1-1580 LRQPNIFEML QERQPSLARN HTLREKIHYI RTEGNHGLEK LSCDADLVIL BACU012607/1-824 LRQPNIFEML QERQPSLARN HTLREKIHYI RTEGNHGLEK LSCDADLVIL 1251 1300 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 LSLFEEEIMS YVPLQAAFHP GYSFSPRCSP CSSPQNSPGL QRASARAPSP ENSBTAP00000028268/1-1596 LSLFEEEIMS YVPLQAAFHP GYSFSPRCSP CSSPQNSPGL QRASARAPSP ENSTTRP00000008632/1-1580 LSLFEEEIMS YVPLQAAFHP GYSFSPRCSP CSSPQNSPGL QRASARAPSP BACU012607/1-824 LSLFEEEIMS YVPLQAAFHP GYSFSPRSSP CSSPQNSPGL QRASARAPSP 1301 1350 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 YRRDFEAKLR NFYRKLEAKG FGQGPGKIKL IIRRDHLLEG TFNQVMAYSR ENSBTAP00000028268/1-1596 YRRDFEAKLR NFYRKLEAKG FGQGPGKIKL IIRRDHLLEG TFNQVMAYSR ENSTTRP00000008632/1-1580 YRRDFEAKLR NFYRKLEAKG FGQGPGKIKL IIRRDHLLEG TFNQVMAYSR BACU012607/1-824 YRRDFEAKLR NFYRKLEAKG FGQGPGKIKL IIRRDHLLEG TFNQVMAYSR 1351 1400 bmy_22220T0/1-815 ------KVSV TAVGA----- ---------- ---------- ---------- ENSP00000379228/1-1606 KELQRNKLYV TFVGEEGLDY SGPSREFFFL LSQELFNPYY GLFEYSANDT ENSBTAP00000028268/1-1596 KELQRNKLYI TFVGEEGLDY SGPSREFFFL LSQELFNPYY GLFEYSANDT ENSTTRP00000008632/1-1580 KELQRNKLYI TFVGEEGLDY SGHSREFFFL LSQELFNPYY GLFEYSANDT BACU012607/1-824 KELQRNKLYI TFVGEEGLDY SGPSREFFFL LSQELFNPYY GLFEYSANDT 1401 1450 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 YTVQISPMSA FVENHLEWFR FSGRILGLAL IHQYLLDAFF TRPFYKALLR ENSBTAP00000028268/1-1596 YTVQISPMSA FVENHLEWFR FSGRILGLAL IHQYLLDAFF TRPFYKALLR ENSTTRP00000008632/1-1580 YTVQISPMSA FVENHLEWFR FSGRILGLAL IHQYLLDAFF TRPFYKALLR BACU012607/1-824 YTVQISPMSA FVENHLEWFR FSGRILGLAL IHQYLLDAFF TRPFYKALLR 1451 1500 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 LPCDLSDLEY LDEEFHQSLQ WMKDNNITDI LDLTFTVNEE VFGQVTEREL ENSBTAP00000028268/1-1596 LPCDLSDLEY LDEEFHQSLQ WMKDNNITDI LDLTFTVNEE VFGQVTEREL ENSTTRP00000008632/1-1580 LPCDLSDLEY LDEEFHQSLQ WMKDNNITDI LDLTFTVNEE VFGQVTEREL BACU012607/1-824 LPCDLSDLEY LDEEFHQSLQ WMKDNNITDI LDLTFTVNEE VFGQVTEREL 1501 1550 bmy_22220T0/1-815 --------LT AKGEDQ---- ---------- ---------- ---------- ENSP00000379228/1-1606 KSGGANTQVT EKNKKEYIER MVKWRVERGV VQQTEALVRG FYEVVDSRLV ENSBTAP00000028268/1-1596 KSGGANTQVT EKNKKEYIER MVRWRVERGV VQQTEALVRG FYEVVDSRLV ENSTTRP00000008632/1-1580 KSGGANTQVT EKNKKEYIER MVRWRVERGA VQQTEALVRG FYEVVDSRLV BACU012607/1-824 KSGGANTQVT EKNKKEYIER MVRWRVERGV VQQTEALVRG FYEVVDSRLV 1551 1600 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 SVFDARELEL VIAGTAEIDL NDWRNNTEYR GGYHDGHLVI RWFWAAVERF ENSBTAP00000028268/1-1596 SVFDARELEL VIAGTAEIDL ADWRNNTEYR GGYHDGHLVI RWFWAAVERF ENSTTRP00000008632/1-1580 SVFDARELEL VIAGTAEIDL VDWRNNAEYR GGYHDGHLVI RWFWAAVERF BACU012607/1-824 SVFDARELEL VIAGTAEIDL ADWRNNAEYR GGYHDGHLVI RWFWAAVERF 1601 1650 bmy_22220T0/1-815 ---------- ---------- ---------- ---------- ---------- ENSP00000379228/1-1606 NNEQRLRLLQ FVTGTSSVPY EGFAALRGSN GLRRFCIEKW GKITSLPRAH ENSBTAP00000028268/1-1596 NNEQRLRLLQ FVTGTSSVPY EGFAALRGSN GLRRFCIEKW GKITSLPRAH ENSTTRP00000008632/1-1580 NNEQRLRLLQ FVTGTSSVPY EGFAALRGSN GLRRFCIEKW GKITSLPRAH BACU012607/1-824 NNEQRLRLLQ FVTGTSSVPY EGFAALRGSN GLRRFCIEKW GKITSLPRAH 1651 1700 bmy_22220T0/1-815 ---------- ---------- ---------- ---- ENSP00000379228/1-1606 TCFNRLDLPP YPSYSMLYEK LLTAVEETST FGLE ENSBTAP00000028268/1-1596 TCFNRLDLPP YPSYSMLYEK LLTAVEETST FGLE ENSTTRP00000008632/1-1580 TCFNRLDLPP YPSYSMLYEK LLTAVEETST FGLE BACU012607/1-824 TCFNRLDLPP YPSYSMLYEK LLTAVEETST FGLE