KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:35:29 2014  Check: 00 ..

 Name: ENSP00000374234/1-275     Len:    276  Check:  389  Weight:  1.00
 Name: ENSBTAP00000028270/1-258  Len:    276  Check:  4417  Weight:  1.00
 Name: bmy_14158T0/1-270         Len:    276  Check:  4337  Weight:  1.00
 Name: ENSTTRP00000011107/1-272  Len:    276  Check:  8876  Weight:  1.00

//


                          1                                                   50
ENSP00000374234/1-275     MQLQVFWTGL -EYTCRLLGI TTAAVLIGVG TETFLQGQFK SLAFYLLFTG 
ENSBTAP00000028270/1-258  MKQQVFWTGL -EYTCRLLGI TTAAVLIGVG TETFLRGEFK SLAFYLLFTG 
bmy_14158T0/1-270         MFVTLRPSHL IEQMRS-LG- ----VLIGVG TETFLQGQFK SLAFYLLFTG 
ENSTTRP00000011107/1-272  MKL-VFWTGL -EYTCR-LGI -TAAVLIGVG TETFLQGQFK SLAFYLLFTG 


                          51                                                 100
ENSP00000374234/1-275     AAVSICEGAY FVAQLLAICF QCQPGSLADR VREKAHWLGC FQKFLAYLLL 
ENSBTAP00000028270/1-258  AAVSVSEGAY FVAQLLSVCF QCQPGSLAYR AREKARWLGC FQRFLAYMLL 
bmy_14158T0/1-270         AAVSVSEGAY FVAQLLAICF QCQPGSLAYR AREKAHWLGC FQRFLAYMLL 
ENSTTRP00000011107/1-272  AAVSVSEGAY FVAQLLAICF QCQPGSLAYR AREKAHWLGC FQRFLAYMLL 


                          101                                                150
ENSP00000374234/1-275     SVACFLHPVL VWHVTIPGSM LIITGLAYFL LSKRKKRKAA PEVLASPEQY 
ENSBTAP00000028270/1-258  SVACFLHPVL VWHVTIPGSM LIITGLAYFL LSKRKKSKPA AEVLAPPEQY 
bmy_14158T0/1-270         SVACFLHPVL VWHVTIPGSM LIITGLAYFL LSKRKKSKAA AEVLPPPEQY 
ENSTTRP00000011107/1-272  SVACFLHPVL VWHVTIPGSM LIITGLAYFL LSKRKKRKAA AEVLAPPEQY 


                          151                                                200
ENSP00000374234/1-275     TDPSSSAVST TGSGDTEQTY TFHGALKEGP SSLFIHMKSI LKGTKKPSAL 
ENSBTAP00000028270/1-258  TDPSSSVVST TGSGDTEQTY TFHGALKEGP GSLFIHMKSI LKGTRKPSAL 
bmy_14158T0/1-270         TDPSGSAVST TGSGDTEQTY TFHGALKEGP GSLFIHMKSV LKGTRKPNAL 
ENSTTRP00000011107/1-272  TDPSGSAVST TGSGDTEQTY TFHGALKEGP GSLFIHMKSI LKGTRKPNAL 


                          201                                                250
ENSP00000374234/1-275     QPPNTLMELS LEPADSLAKK KQVHFEDNLV RIVPSLAEGL DDGDSEPEET 
ENSBTAP00000028270/1-258  QHPDTPTELP LEPAGSLA-K KQVQFEDSVV RISPALAEGP DDGDSEPEET 
bmy_14158T0/1-270         QHPDALTELT LEPADPLAKK KQVHFDDSMV RMIPDLAEDL DDGDGEPEET 
ENSTTRP00000011107/1-272  QHPDALTELT LEPADPLAKK KQVHFEDSTV RMIPDLAEDL NDGDSEPEEV 


                          251                                                300
ENSP00000374234/1-275     TSDTTPIIPP PQAPLFLSSL TATGLF 
ENSBTAP00000028270/1-258  TSDTTPIIPP ---------- ------ 
bmy_14158T0/1-270         TSDTTPIIPP PEAPLFLSSL XGTSLF 
ENSTTRP00000011107/1-272  TSDTAPIIPP PEAPLFLSSL AGTSLF