KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:35:30 2014 Check: 00 .. Name: bmy_00756T0/1-592 Len: 637 Check: 676 Weight: 1.00 Name: ENSBTAP00000028271/1-367 Len: 637 Check: 8098 Weight: 1.00 Name: BACU011928/1-408 Len: 637 Check: 9279 Weight: 1.00 Name: ENSTTRP00000016371/1-367 Len: 637 Check: 8572 Weight: 1.00 // 1 50 bmy_00756T0/1-592 MRRQRDRDCS RPKTQEQKIG RQKQTHVETD KRDIKSLKQS QKNYKKRQGT ENSBTAP00000028271/1-367 ---------- ---------- ---------- ---------- ---------- BACU011928/1-408 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016371/1-367 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_00756T0/1-592 WRETEAEERR RKWGETAGAA TAIGAMDKEY VGFAALPNQL HRKSVKKGFD ENSBTAP00000028271/1-367 ---------- ---------- -----MDKEY VGFAALPNQL HRKSVKKGFD BACU011928/1-408 ---------- ---------- -----MDKEY VGFAALPNQL HRKSVKKGFD ENSTTRP00000016371/1-367 ---------- ---------- -----MDKEY VGFAALPNQL HRKSVKKGFD 101 150 bmy_00756T0/1-592 FTLMVAGESG LGKSTLINSL FLTNLYEDRQ VPEARARLTQ TLTIERRGVE ENSBTAP00000028271/1-367 FTLMVAGESG LGKSTLINSL FLTNLYEDRQ IPEASARLTQ TLTIERRGVE BACU011928/1-408 FTLMVAGELG LGKSTLINSL FLTNLYEDRQ VPEARARLTQ TLTIERRGVE ENSTTRP00000016371/1-367 FTLMVAGESG LGKSTLINSL FLTNLYEDRQ VPEARARLTQ TLTIERRGVE 151 200 bmy_00756T0/1-592 IEEGGIKVKL TLVDTPGFGD SVDCSDCWLP VVRFIEEQFE QYLRDESGLN ENSBTAP00000028271/1-367 IEEGGIKVKL TVVDTPGFGD SVDCSDCWLP VVRFIEEQFE QYLRDESGLN BACU011928/1-408 IEEGGIKVKL TLVDTPGFGD SVDCSDCWLP VVRFIEEQFE QYLQDESGLN ENSTTRP00000016371/1-367 IEEGGIKVKL TLVDTPGFGD SVDCSDCWLP VVRFIEEQFE QYLRDESGLN 201 250 bmy_00756T0/1-592 RKNIQDSRVH CCLYFISPFG RGSEGHPGEL RPLDVAFLRA VHEKVNIIPV ENSBTAP00000028271/1-367 RKNIQDSRVH CCLYFISPFG RG-------L RPLDVAFLRA VHEKVNIIPV BACU011928/1-408 RKNIQDSRVH CCLYFISPFG RG-------L RPLDVAFLRA VHEKVNIIPV ENSTTRP00000016371/1-367 RKNIQDSRVH CCLYFISPFG RG-------L RPLDVAFLRA VHEKVNIIPV 251 300 bmy_00756T0/1-592 IGKADALMPK ETQALKQK-- ---------- ---------- ---------- ENSBTAP00000028271/1-367 IGKADALMPK ETQALKQK-- ---------- ---------- ---------- BACU011928/1-408 IGKADALMPK ETQALKQKDA DCPPPSHPPV SSEPFPTVSA YASLSWSFGV ENSTTRP00000016371/1-367 IGKADALMPK ETQALKQK-- ---------- ---------- ---------- 301 350 bmy_00756T0/1-592 ---------I REQLQEEEIN IYQFPDCDSD EDEDFKRQDA EMKVQRQRRK ENSBTAP00000028271/1-367 ---------I REQLKEEEIN IYQFPECDSD EDEDFKRQDA EMKESI---- BACU011928/1-408 CSSSKLPIRI REQLQEEEIN IYQFPDCDSD EDEDFKRQDA EMKESI---- ENSTTRP00000016371/1-367 ---------I REQLQEEEIN IYQFPDCDSD EDEDFKRQDA EMKESI---- 351 400 bmy_00756T0/1-592 GQRSQGRRMW RGPTVIADSC PL----GKHP FRRRRFLRSS EGRRDPTGEG ENSBTAP00000028271/1-367 ---------- --PFAVVGSC EVVRDGGPRP VRGRHY---- ---------- BACU011928/1-408 ---------- --PFAVVGSC EVVRDGGTRP VRGRRY---- ---------- ENSTTRP00000016371/1-367 ---------- --PFAVVGSC EVVRDGGTRP VRGRCY---- ---------- 401 450 bmy_00756T0/1-592 TPLLLGHRGG REPRTPPSQP HPTREVGESS GPGGPKSQKR GPWAADPTQA ENSBTAP00000028271/1-367 ---------- ---------- ---------- ---------- -SWGT----- BACU011928/1-408 ---------- ---------- ---------- ---------- -SWGT----- ENSTTRP00000016371/1-367 ---------- ---------- ---------- ---------- -SWGT----- 451 500 bmy_00756T0/1-592 PRLSPVRPPV ENPHHCDFLN LRRMLVQTHL QDLKEVTHDL LYEGYRARCL ENSBTAP00000028271/1-367 -------VEV ENPHHCDFLN LRRMLVQTHL QDLKEVTHDL LYEGYRARCL BACU011928/1-408 -------VEV ENPHHCDFLN LRRMLVQTHL QDLKEVTHDL LYEGYRARCL ENSTTRP00000016371/1-367 -------VEV ENPHHCDFLN LRRMLVQTHL QDLKEVTHDL LYEGYRARCL 501 550 bmy_00756T0/1-592 QSLARPGARD RASRSKLSRQ SATEIPLPML PLADTEKLIR EKDEEVSKHL ENSBTAP00000028271/1-367 QSLARPGARD RASRSKLSRQ SATEIPLPML PLADTEKLIR EKDEEL---- BACU011928/1-408 QSLARPGARD RASRSKLSRQ SATEIPLPML PLADTEKLIR EKDEEL---- ENSTTRP00000016371/1-367 QSLARPGARD RASRSKLSRQ SATEIPLPML PLADTEKLIR EKDEEL---- 551 600 bmy_00756T0/1-592 AFPQIKAPNP LRSPFLALPS PTAYNLAPHS CAACKRCWRR CRPRCSRARL ENSBTAP00000028271/1-367 ---------- ---------- ---------- --------RR MQEMLEKMQA BACU011928/1-408 ---------- ---------- ---------- --------RR MQEMLEKMQA ENSTTRP00000016371/1-367 ---------- ---------- ---------- --------RR MQEMLEKMQA 601 650 bmy_00756T0/1-592 RASSRTLSET PARTLLYHGS AFSSYLVQSS SPRLPGA ENSBTAP00000028271/1-367 QMQLSQAQGE QSDAL----- ---------- ------- BACU011928/1-408 QMRQSQAQGE QSDAL----- ---------- ------- ENSTTRP00000016371/1-367 QMQQNQAQGE QSDAL----- ---------- -------