KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:34 2014 Check: 00 .. Name: ENSP00000378845/1-269 Len: 305 Check: 9947 Weight: 1.00 Name: ENSBTAP00000028315/1-254 Len: 305 Check: 6146 Weight: 1.00 Name: bmy_00803T0/1-261 Len: 305 Check: 2956 Weight: 1.00 Name: BACU011892/1-261 Len: 305 Check: 3162 Weight: 1.00 Name: ENSTTRP00000007495/1-266 Len: 305 Check: 9892 Weight: 1.00 // 1 50 ENSP00000378845/1-269 MEATAASWQV AVPVLGGASR PLGPRGAASL LRAPLQMEEA ILVPCVLGLL ENSBTAP00000028315/1-254 ---------- ---------- ---------- ------MEAV SPAVYVLGPL bmy_00803T0/1-261 ---------- ---------- ---------- ------MEAV SLVLFVLGLL BACU011892/1-261 ---------- ---------- ---------- ------MEAV SLGLFVLGLL ENSTTRP00000007495/1-266 EEGTAAGWQV SFPV-AGTSR PFGCGRAASP VHAPLQMEAV SPVLFVLGLL 51 100 ENSP00000378845/1-269 LLPILA-MLM ALCVHCHRLP GSYDSTSSDS LYPRGIQFKR PHTVAPWPPA ENSBTAP00000028315/1-254 LLPLLAVLLM ALCVRCRELP GSYDTAVSDS LTPSSIMIKL PPTLVPRPST bmy_00803T0/1-261 LLPLLAVLLM ALCVRCRELP GSYDTAASDG LTPSSIVIKS PPTLAPWPPA BACU011892/1-261 LLPLLAVLLM ALCVRCRELP GSYDTAASDG LTPSSIVIKS PPTLASWPPA ENSTTRP00000007495/1-266 LLPLLAVLLM ALCVHCRELP GSYDTAASDG LTPSSIVIKP PPTAASWPPA 101 150 ENSP00000378845/1-269 --YPPVTSYP PLSQPDLLPI PRSPQPLGGS HRTPSSRRDS DGANSVASYE ENSBTAP00000028315/1-254 TPYP-----L P-SQPDLLPI PRSPQPLGGS HCMASSRQDS DSANSVASYE bmy_00803T0/1-261 TSYPPVTYLL Q-SQPDLLPI PRSPQPPGGS HRMPSSQQDS DGANSVASYE BACU011892/1-261 TSYPPVTYLL Q-SQPDLLPI PRSPQPPGGS HRMPSSQQDS DGANSVASYE ENSTTRP00000007495/1-266 TSYPPVTYLL Q-SQPDLLRI PRSPQAPGGS PRMPSSQQDS DGANSVASYE 151 200 ENSP00000378845/1-269 NE-------- ---------- ---------- -EPACEDADE DED--DYHNP ENSBTAP00000028315/1-254 NEGVTGTPVA PAGRRLRPIL GSADPV-WSP PEAACEDADE DDYEEDYNNE bmy_00803T0/1-261 NEGASGTPAA LVGRRLGPVL GSADPVSLPP PEAVCEDADE DEDEEDYPNE BACU011892/1-261 NEGASGTPAA LVGRTLGPVL CSADPVSLTP PEAVCEDADE DEDEEDYPNE ENSTTRP00000007495/1-266 NE-------- ---------- ---------- -EAVCEDADE DEDEEDYP-E 201 250 ENSP00000378845/1-269 GYLVVLPDST PA--TSTAAP SAPALSTPGI RDSAFSMESI DDYVNVPESG ENSBTAP00000028315/1-254 GYLVVLPDRD PATSTGNAVS PAPASSKPGL RDSAFSMESG EDYVNVPESE bmy_00803T0/1-261 GYLVVLPDSV PA--TGAAVP PAPVSSNPGL RDSAFSMKSG EDYVNVPESE BACU011892/1-261 GYLVVLPDSV PA--TGAAVP PAPVSSNPGL RDSAFSVKSG EDYVNVPESE ENSTTRP00000007495/1-266 GYLVVLPDNV PA--TGAAVP PAPASSNPGL RDSAFSMESG EDYVNVPESE 251 300 ENSP00000378845/1-269 ESAEASLDGS REYVNVSQEL HPGAAKTEPA ALSSQEAEEV EEEGAPDYEN ENSBTAP00000028315/1-254 ESADASLNGS REYVNVSQEL QPG-AKTKPD ---TQNSQEV EDEEAPDYEN bmy_00803T0/1-261 ESADASLDGS REYVNVSQEL PPV-ARTKPA ---SRSSQEM EDEETPDYEN BACU011892/1-261 ESADASLDGS REYVNVSQEL PPV-ARTKPA ---SRSSQEM EDEETPDYEN ENSTTRP00000007495/1-266 ESADASLDGS REYVNVSQEL PPV-ARTEPA ---SRSSQEV EGEEAPDYEN 301 350 ENSP00000378845/1-269 LQELN ENSBTAP00000028315/1-254 L---- bmy_00803T0/1-261 LQ-IH BACU011892/1-261 LQ-IH ENSTTRP00000007495/1-266 LQ-IH