KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:34 2014 Check: 00 .. Name: BACU004403/1-948 Len: 1016 Check: 4372 Weight: 1.00 Name: ENSTTRP00000012333/1-666 Len: 1016 Check: 3313 Weight: 1.00 Name: ENSP00000332454/1-784 Len: 1016 Check: 5581 Weight: 1.00 Name: bmy_13631T0/1-783 Len: 1016 Check: 7678 Weight: 1.00 Name: ENSBTAP00000028318/1-785 Len: 1016 Check: 7507 Weight: 1.00 // 1 50 BACU004403/1-948 MDTGFGERKP REEQPDRGSN VTSSEKPPGI PQKPSFPTPT ASKHSALQLA ENSTTRP00000012333/1-666 ---------- ---------- ---------- ---------- ---------- ENSP00000332454/1-784 ---------- ---------- ---------- ---------- ---------- bmy_13631T0/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028318/1-785 ---------- ---------- ---------- ---------- ---------- 51 100 BACU004403/1-948 ITLTRYSFYE FVPICASLLF SKFRKGGDCT SSHHFIISPE PPPPPPTLRK ENSTTRP00000012333/1-666 ---------- ---------- ----MEGESR S--------- ----PWALGL ENSP00000332454/1-784 ---------- ---------- ----MEGDGG T--------- ----PWALAL bmy_13631T0/1-783 ---------- ---------- ----MEGESR S--------- ----PWALGL ENSBTAP00000028318/1-785 ---------- ---------- ----MEGESR G--------- ----PWALGL 101 150 BACU004403/1-948 LSVMHCGLCK CLLSETNGSG IVVAVTTGQN QEDSWTKVTE G------LLR ENSTTRP00000012333/1-666 LRTFDAD--- ----EFAG-- ---------- ----WEKVGS GGFGQVYKVR ENSP00000332454/1-784 LRTFDAG--- ----EFTG-- ---------- ----WEKVGS GGFGQVYKVR bmy_13631T0/1-783 LRTFDAG--- ----EFAG-- ---------- ----WEKVGS GGFGQVYKVR ENSBTAP00000028318/1-785 LRTFDAG--- ----EFAG-- ---------- ----WEKVGS GGFGQVYKVR 151 200 BACU004403/1-948 WLHRDPPPVQ VWVRPLFIAC FSLRAGWGLL APVFMPPLDR SRLPQAMERM ENSTTRP00000012333/1-666 HVH------- -WKTWLAIKC ---------- ----SPSLH- ---VDDRERM ENSP00000332454/1-784 HVH------- -WKTWLAIKC ---------- ----SPSLH- ---VDDRERM bmy_13631T0/1-783 HVH------- -WKTWLAIKC ---------- ----SPSLH- ---VDDRERM ENSBTAP00000028318/1-785 HVH------- -WKTWLAIKC ---------- ----SPSLH- ---VDDRERM 201 250 BACU004403/1-948 ELLEEAKKME MAKFRYILPV YGICQEPVGL VMEYMETGSL EKLLASEPLP ENSTTRP00000012333/1-666 ELLEEAKKME MAKFRYILPV YGICQEPVGL VMEYMETGSL EKLLASEPLP ENSP00000332454/1-784 ELLEEAKKME MAKFRYILPV YGICREPVGL VMEYMETGSL EKLLASEPLP bmy_13631T0/1-783 ELLEEAKKME MAKFRYILPV YGICQEPVGL VMEYMETGSL EKLLASEPLP ENSBTAP00000028318/1-785 ELLEEAKKME MAKFRYILPV YGICREPVGL VMEYMETGSL EKLLASEPLP 251 300 BACU004403/1-948 WDLRFRIIHE AAVGMNFLHC MSPPLLHLDL KPANILLDAH YHVKISDFGL ENSTTRP00000012333/1-666 WDLRFRIVHE TAVGMNFLHC MAPPLLHLDL KPANILLDAH YHVKISDFGL ENSP00000332454/1-784 WDLRFRIIHE TAVGMNFLHC MAPPLLHLDL KPANILLDAH YHVKISDFGL bmy_13631T0/1-783 WDLRFRIIHE AAVGMNFLHC MSPPLLHLDL KPANILLDAH YHVKISDFGL ENSBTAP00000028318/1-785 WDLRFRIIHE TAVGMNFLHC MAPPLLHLDL KPANILLDAH YHVKISDFGL 301 350 BACU004403/1-948 AKCNGLSHSH DLSMDGLFGT IAYLPPERIR EKSRLFDTKH DVYSFAIVIW ENSTTRP00000012333/1-666 AKCNGLSHSQ DLSMDGLFGT IAYLPPERIR EKSRLFDTKH DVYSFAIVIW ENSP00000332454/1-784 AKCNGLSHSH DLSMDGLFGT IAYLPPERIR EKSRLFDTKH DVYSFAIVIW bmy_13631T0/1-783 AKCNGLSHSH DLSMDGLFGT IAYLPPERIR EKSRLFDTKH DVYSFAIVIW ENSBTAP00000028318/1-785 AKCNGLSHSH DLSMDGLFGT IAYLPPERIR EKSRLFDTKH DVYSFAIVIW 351 400 BACU004403/1-948 GVLTQKKPFA DEKNILHIMV KVVKGHRPEL PPVCRPRPRA CESLLRLMQR ENSTTRP00000012333/1-666 GVLTQKKPFA DEKNILHIMV KVVKGHRPEL PPVCRPRPRA CENLLRLMQR ENSP00000332454/1-784 GVLTQKKPFA DEKNILHIMV KVVKGHRPEL PPVCRARPRA CSHLIRLMQR bmy_13631T0/1-783 GVLTQKKPFA DEKNILHIMV KVVKGHRPEL PPVCRPRPRA CESLLRLMQR ENSBTAP00000028318/1-785 GVLTQKKPFA DEKNILHIMV RVVKGHRPEL PPVCKPRPRA CRSLLRLMQR 401 450 BACU004403/1-948 CWHGDPRERP SFQ--EITSE T-EDLCEKPD ---------- ---------- ENSTTRP00000012333/1-666 CWHGDPRERP SFQGNQLNGE SRQELAAGPS GSGGSGFLGK RGLGGSCLES ENSP00000332454/1-784 CWQGDPRVRP TFQ--EITSE T-EDLCEKPD ---------- ---------- bmy_13631T0/1-783 CWHGDPRERP SFQ--EITSE T-EDLCEKPD ---------- ---------- ENSBTAP00000028318/1-785 CWHGDPRERP SFQ--EITSE T-EDLCEKPD ---------- ---------- 451 500 BACU004403/1-948 ---------- ---------- -------DEV KETTQDPDVR NPPEAEAEAP ENSTTRP00000012333/1-666 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332454/1-784 ---------- ---------- -------DEV KETAHDLDVK SPPEPRSEV- bmy_13631T0/1-783 ---------- ---------- -------DEV KETTQDPDVR NP--AEAKAP ENSBTAP00000028318/1-785 ---------- ---------- -------EEV KETTQDPDVR DPPDAEAEAP 501 550 BACU004403/1-948 VASPLKRASA PTFDNDYSLS ELLSQLDSGI SQTLEGPEEL SRSSSESRLP ENSTTRP00000012333/1-666 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSACKLP ENSP00000332454/1-784 VPARLKRASA PTFDNDYSLS ELLSQLDSGV SQAVEGPEEL SRSSSESKLP bmy_13631T0/1-783 VATPLKRASA PTFDNDYSLS ELLSQLDSGI SQTLEGPEEL SRSSSESRLP ENSBTAP00000028318/1-785 VPTPLKRASA PTFDNDYSLS ELLSQLDSGI SQTLEGPEEL SRSSSESKLP 551 600 BACU004403/1-948 SASSGKRLSG VSSVDSAFSS RGSLSLSFER EPSAGDLGAT DVQKKKLVDA ENSTTRP00000012333/1-666 SASSGKRLSG VSSVDSAFSS RGSLSLSFER ESSAGDLGAT DIQKKKLVDA ENSP00000332454/1-784 SSGSGKRLSG VSSVDSAFSS RGSLSLSFER EPSTSDLGTT DVQKKKLVDA bmy_13631T0/1-783 SASSGKRLSG VSSVDSAFSS RGSLSLSFER EPSAGDLGAT DVQKKKLVDA ENSBTAP00000028318/1-785 SASSGKRLSG VSSVDSAFSS RGSLSLSFER EPSTNDLGTT DIQKKKLVDA 601 650 BACU004403/1-948 IVSGDTSRLM KILQPQDVDL VLDGGASLLH VAVQAGQEDC VKWLLLNNAN ENSTTRP00000012333/1-666 IVNGDTSRLM KILQPQDVDL VLDGGASLLH LAVQAGQEDC VKWLLLNNAN ENSP00000332454/1-784 IVSGDTSKLM KILQPQDVDL ALDSGASLLH LAVEAGQEEC AKWLLLNNAN bmy_13631T0/1-783 IVNGDTSRLM KILQPQDVDL VLDGGASLLH LAVQAGQEDC VKWLLLNNAN ENSBTAP00000028318/1-785 IVSGDTSRLM KILQPQDVDL VLDGGASLLH LAVEAGQEDC VKWLLLNNAN 651 700 BACU004403/1-948 PDLANRKGST PLHLAVEKRV RGVVELLLAR KISVNAADED QWTALHFAAQ ENSTTRP00000012333/1-666 PNLTNRKGST PLHVAVEKRV RGVVELLLTR KISVNAADED QWTALHFAAQ ENSP00000332454/1-784 PNLSNRRGST PLHMAVERRV RGVVELLLAR KISVNAKDED QWTALHFAAQ bmy_13631T0/1-783 PNLTNRKGST PLHVAVEKRV RGVVELLLAR KISVNAADED QWTALHFAAQ ENSBTAP00000028318/1-785 PNLTNRRGST PLHVAVEKRV RGIVELLLAR KISVNAADED QWTALHFAAQ 701 750 BACU004403/1-948 NGDEGSTRLL LEKNASVHEA DCEGRTPM-- ---HGR---- RYQMLKGIDR ENSTTRP00000012333/1-666 NGDEGSTRLL LEKNASMHEA DCEGRTPMHV ACQHGQESIV RILLRHGVDA ENSP00000332454/1-784 NGDESSTRLL LEKNASVNEV DFEGRTPMHV ACQHGQENIV RILLRRGVDV bmy_13631T0/1-783 NGDEGSTRLL LEKNASVHEA DCEGRTPMHV ACQHGQESIV RILLRRGVDA ENSBTAP00000028318/1-785 NGDEGSMRLL LEKNASVHEA DCEGRTPMHV ACQHGQEGVV RILLRRGVDA 751 800 BACU004403/1-948 HKDCSTSSWG PLDADLSQPC SIKDGTRLNQ RNLLIDKPGP RTQGFQTSLT ENSTTRP00000012333/1-666 GLP-GKDAWV PLHYAAWQ-- -----GHLPI VKLLAKQPGV SVD----AQT ENSP00000332454/1-784 SLQ-GKDAWL PLHYAAWQ-- -----GHLPI VKLLAKQPGV SVN----AQT bmy_13631T0/1-783 GLP-GKDAWV PLHYAAWQ-- -----GHLPI VKLLAKQPGV SVD----AQT ENSBTAP00000028318/1-785 GLP-GKDAWV PLHYAAWQ-- -----GHLPI VKLLAKQPGV SVD----AQT 801 850 BACU004403/1-948 NSCQEDKHTG IRREHPDPAW ALPNRQDELL GPGLVGWRDG LQARVAVQVS ENSTTRP00000012333/1-666 LDGRTPLHLA AQRG------ ---------- ---------- ---------- ENSP00000332454/1-784 LDGRTPLHLA AQRGHYRVAR ILIDLCSDVN VCSLL----- --AQTPLHVA bmy_13631T0/1-783 LDGRTPLHLA AQRGHYRVAR VLIDLHSDVN VCGLL----- --AQTPLHVA ENSBTAP00000028318/1-785 LDGRTPLHLA AQRGHYRVAR VLIDLHSDVN VCNLL----- --AQTPLHVA 851 900 BACU004403/1-948 PPPTLPSTVS FVAGRARSPR KSPRQDPLRD WSLHSQDTSS WGGGSSDLGP ENSTTRP00000012333/1-666 ---------- ---------- ---------- ---------- ---------- ENSP00000332454/1-784 AETGHTSTAR LLLHRGA--- ---------- ---GKEAMTS DGYTALHLAA bmy_13631T0/1-783 AETGHTSTAR LLLHRGA--- ---------- ---RREAVTA EGCTALHLAA ENSBTAP00000028318/1-785 AETGHTSTAR LLLHRGA--- ---------- ---HREAVTA EGCTALHLAA 901 950 BACU004403/1-948 QNHTFCRSAS EMAKQRYSRE VGGGLGSLER CVGAGPAQPA SPPNILSVPR ENSTTRP00000012333/1-666 ---------- ---------- ---------- ---------- ---------- ENSP00000332454/1-784 RNGHLA-TVK LLVEEKADVL ARGPLNQTAL HLAAAHGHSE VVEELVSADV bmy_13631T0/1-783 RAGHLA-TVK LLVEERADVL ARGPRHQTAL HLAAAGGHSE VVEELVSADV ENSBTAP00000028318/1-785 RNGHLA-TVK LLVEERANML ARGPRSQTAL HLAAAGGHSE VVEELVSADV 951 1000 BACU004403/1-948 FLVVSSLCLS D---GGTGQG CHLHSPLIRK CPVWELHPNC FFQSLFSSQP ENSTTRP00000012333/1-666 ---------- ---------- ---------- ---------- ---------- ENSP00000332454/1-784 IDLFDEQGLS ALHLAAQGRH AQTVETLLRH GAHINLQSLK FQGGHGPAAT bmy_13631T0/1-783 RDLSDEQGLS ALHLAARGRH AKTVEALLRH GAHVNLQSLK FQGGPGPSAT ENSBTAP00000028318/1-785 LDLSDEQGLS ALHLAAQGRH TKTVETLLRH GAHVNLQSLK FQGGPSPAAT 1001 1050 BACU004403/1-948 HLCACSDRCQ TPEIPS ENSTTRP00000012333/1-666 ---------- ------ ENSP00000332454/1-784 LLRRSKT--- ------ bmy_13631T0/1-783 LLRRSKT--- ------ ENSBTAP00000028318/1-785 LLRRSKT--- ------