KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:35 2014 Check: 00 .. Name: ENSP00000362018/1-756 Len: 766 Check: 1968 Weight: 1.00 Name: ENSTTRP00000014490/1-749 Len: 766 Check: 9475 Weight: 1.00 Name: ENSBTAP00000028322/1-737 Len: 766 Check: 6325 Weight: 1.00 Name: bmy_10079T0/1-741 Len: 766 Check: 6098 Weight: 1.00 Name: BACU009100/1-549 Len: 766 Check: 6691 Weight: 1.00 // 1 50 ENSP00000362018/1-756 MSPQKRVKNV QAQNRTSQGS SSFQTTLSAW KVKQDPSNSK NISKHGQNNP ENSTTRP00000014490/1-749 MSLQRKVKNS QARKRTSQGS NSYQTTLSAW KVTEDLSDSK SISKHGQNNP ENSBTAP00000028322/1-737 MSSQKKI-NS WARKRTSQDS SSYQTRLSAW RVKEDLNDSK SISKCGQNST bmy_10079T0/1-741 MSLQRKVKNS QARKRTSQGS NSYQTRLSPW KVKDDLSDSK SILKHGQNNP BACU009100/1-549 MSLQRKVKNS QAQKRTSQGS NSYQTRLSAW KVKEDLSDSK SISKHGQNNP 51 100 ENSP00000362018/1-756 VGDYEHADDQ AEEDALQMAV GYFEKGPIKA SQNKDKTLEK HLKTVENVAW ENSTTRP00000014490/1-749 VEDYERADDQ A-EGALQIAL TYFEKGSIKT SQSKDKTLEK HLKTVENVAW ENSBTAP00000028322/1-737 VEDYEGADDQ A-ENALQIAL RYFEKGPIKT SQNK----EK HLKTVENVAW bmy_10079T0/1-741 VEDYEHADDQ V-EGALQIAL TYFEKGPIKT SQSKDKTLEK HLKTVENVAW BACU009100/1-549 VEDYEHADDQ A-EGALQIAL TYFEKGPVKT SQSKDKTLEK HLKTVENVAW 101 150 ENSP00000362018/1-756 KNGLASEEID ILLNIALSGK FGNAVNTRIL KCMIPATVIS EDSVVKAVSW ENSTTRP00000014490/1-749 KNGLAPEGID ILLNVALSGK FGSAVNTRIF KCMIPATLIS EDSVVTAVSW ENSBTAP00000028322/1-737 KNGLAPEGID ILLSVALSGK FGSAVNTRIF KCMIPATLIS EDSVVKAVSW bmy_10079T0/1-741 KNGLAPEGIB ILLNVALSGK FGSAVNTRIF KCMIPATLIS EDSVVKAVSW BACU009100/1-549 KNGLAPEGID ILLNVALSGK FGSAVNTRIF KCMIPATLIS EDSVVKAVSW 151 200 ENSP00000362018/1-756 LCVGKCSGST KVLFYRWLVA MFDFIDRKEQ INLLYGFFFA SLQDDALCPY ENSTTRP00000014490/1-749 LCVGKCSGST KXXXXXXLVA MFDFIDHKEQ INLLYGFFFA SLQDDALXXX ENSBTAP00000028322/1-737 LCAGKCSGST KVLFYRWLVA MFDFIDHKEQ INLLYGFFFA SLQDDALCPY bmy_10079T0/1-741 LCVGKCSGST KVLFYRWLVA MFDFIDHKEQ INLLYGFFFA SLQDDALCPY BACU009100/1-549 LCVGKCSGST KVLFYRWLVA MFDFIDHKEE INLLYGFFFA SLQDDALCPY 201 250 ENSP00000362018/1-756 VCHLLYLLTK KENVKPFRVR KLLDLQAKMG MQPHLQALLS LYKFFAPALI ENSTTRP00000014490/1-749 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG MQPHLQALLS LYKFFVPTLI ENSBTAP00000028322/1-737 VCHLLYLLTK KENVKPFRVR KLLDLQAKMG MQPHLQALLS LYKFFVPTLI bmy_10079T0/1-741 VCHLLYLLTK KENVKPFR-- ---------G MQPHLQALLS LYKFFVPTLI BACU009100/1-549 VCHLLYLLTK KENVKPFRVR KLLDLQAKMG MQPHLQALLS LYKFFVPTLI 251 300 ENSP00000362018/1-756 SVSLPVRKKI YFKNSENLWK TALLAVKQRN RGPSPEPLKL MLGPANVRPL ENSTTRP00000014490/1-749 SVSLPMRKKI YFKNSENLWK TALLAVRQRN QGLPPEPLKL ML--ANVHPI ENSBTAP00000028322/1-737 SVSLPMRKKI YFKNSENLWK TALLALKPRN PGFPSEPLKL ML--TNVYPI bmy_10079T0/1-741 SVSLPMRKKI YFKNSENLWK TALLAVRQRN QGLPPEPLKL ML--ANVHPV BACU009100/1-549 SVSLPMRKK- ---------- ---------- ---------- ---------- 301 350 ENSP00000362018/1-756 KRKWNSLSVI PVLNSSSYTK ECGKKEMSLS DCLNRSGSFP LEQLQSFPQL ENSTTRP00000014490/1-749 KRKWNSHSVI PVLNSRNYSK ESGKKGMNLS DYFSSNGSFP LEQLKSFPQL ENSBTAP00000028322/1-737 KRKWNSHSII PVLNSCNYSK ESRKKRMNLS DYLSSNGSFP LEQLKSFPQL bmy_10079T0/1-741 KRKWNSHSVI PVLNSRNYSK ESGKKGMNLS DYFSSNGSFP LEQLKSFPQL BACU009100/1-549 --KWNSHSVI PVLNSRNYSK ESGKKGMNLS DYFSSNGSFP LEQLKSFPQL 351 400 ENSP00000362018/1-756 LQNIHCLELP SQMGSVLNNS LLLHYINCVR DEPVLLRFYY WLSQTLQEEC ENSTTRP00000014490/1-749 LQNIHCLELP SQMGAVLNNS LLLHYINCVR DESVLLRLYH WLSQTLQEEC ENSBTAP00000028322/1-737 LQNIHCLELP SQMGAVLNSS LLLHYINCVR DESVLLRLYH WLSQTLQEEC bmy_10079T0/1-741 LQNIHCLELP SQMGAVLNNS LLLHYINCVR DESVLLRLYH WLSQTLQEEC BACU009100/1-549 LQNIHCLE-- --MGAVLNNS LLLHYINCVR DESVLLRLYH WLSQTLQEEC 401 450 ENSP00000362018/1-756 IWYKVNNYEH GKEFTNFLDT IIRAECFLQE GFYSCEAFLY KSLPLWDGLC ENSTTRP00000014490/1-749 IWYKVNNYEH GKEFTNFLDT ILKAECFLQX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000028322/1-737 NWYKVNNYDH GKEFANFLDT ILRAECFLQE GFYSCEAFLY KSLPLWDGLC bmy_10079T0/1-741 IWYKVNNYEH GKEFTNFLDT ILKAECFLQE GFYSCEAFLY KSLPLWDGFC BACU009100/1-549 IWYKVNNYEH GKEFPNFLDT ILKAECFLQ- ---------- ---------- 451 500 ENSP00000362018/1-756 CRSQFLQLVS WIPFSSFSEV KPLLFDHLAQ LFFTSTIYFK CSVLQSLKEL ENSTTRP00000014490/1-749 XXXXXXXXXX XXXXXXXXXV KPLLFDHLSR LFFTSTIYFK CSVLQCLKEL ENSBTAP00000028322/1-737 CRSQFLQLVS WIPFSSFSEM KPLLFDHLSR LFFTSSIFFK CSILQCLKEL bmy_10079T0/1-741 CRSQFLQLVS WIPFSSFSEV KPLLFDHLSR LFFTSTIYFK CSVLQCLKEL BACU009100/1-549 ---------- ---------- ---------- ---------- CSVLQCLKEL 501 550 ENSP00000362018/1-756 LQNWLLWLSM DIHMKPVTNS PLETTLGGSM NSVSKLIHYV GWLSTTAMRL ENSTTRP00000014490/1-749 LQNWLLWLSM DIHVKSV-NS PLETTLGGSM NSVSKLIQYV WWLSTTA-RL ENSBTAP00000028322/1-737 LQNWLLWLSM DIHVKSVRNS PLETTLGGSM NSVSELIHYV GWLSTTAVRL bmy_10079T0/1-741 LQNWLLWLSM DIHMKSVMNS PLETTLGGSM NSVSKLIHYV GWLSTTAMRL BACU009100/1-549 LQNWLLWLSM DIHMKSVMNS PL-------- ---------- ---------- 551 600 ENSP00000362018/1-756 ESNNTFLLHF ILDFYEKVCD IYINYNLPLV VLFPPGIFYS ALLSLDTSIL ENSTTRP00000014490/1-749 ENNSTFLLHF ILDFYEKVCD IYINYNLPLV VLFPPGVFYP ALLSLDSSIL ENSBTAP00000028322/1-737 ESNRTFLLHF ILDFYEKVCD IYINYNLPLV VLFPPGVFYP VLLSLDSSIL bmy_10079T0/1-741 ENNSTFLLHF ILDFYEKVCD IYINYNLPLV VLFPPGVFYP ALLSLDSSIL BACU009100/1-549 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000362018/1-756 NQLCFIMHRY RKNLTAAKKN ELVQKTKSEF NFSSKTYQEF NHYLTSMVGC ENSTTRP00000014490/1-749 NQLCYIMDRY RKNLTAAKKN ELVQKTKSEF SFSSKTYQEF NHYLTATVGC ENSBTAP00000028322/1-737 NQLCYIMDRY HKNLTAAKKN EFVHKTKSEF SFSSKTYQEF NQYLTAMVGC bmy_10079T0/1-741 NQLCYIMDRY RKNLTAAKKN ELVQKTKSEF SFSSKTYQEF NHYLTAMVGC BACU009100/1-549 ---------Y RKNLTAAKKN ELVQKTKSEF SFSSKTYQEF NHYLTAMVGC 651 700 ENSP00000362018/1-756 LWTSKPFGKG IYIDPEILEK TGVAEYKNSL NVVHHPSFL- ----SYAVSF ENSTTRP00000014490/1-749 LWTSKPFQKG LYIDPKVLEK ASVAEYKNSL NLVHHPALL- ----GYAVFF ENSBTAP00000028322/1-737 LWTSRPFQKG LYIDPEVLGN ASVAEYKKSL NLVHHPAFL- ----SYTVSF bmy_10079T0/1-741 LWTSKPFQKG LYIDPEVLEK ASVAEYKNSL NLVHHPALLR RNMEGYSGCL BACU009100/1-549 LWTSKPFQKG LYIDPEVLEK ASVAEYKNSL NLVHHPALL- ----SYAVFF 701 750 ENSP00000362018/1-756 L-----LQES PEERTVNVSS IRGKKWSWYL DYLFSQGLQG LKLFIRSSVH ENSTTRP00000014490/1-749 L-----LQGS PKERKVNLSS IRGKKWNWYL DYLFSEGLQG LKLFIRSSIH ENSBTAP00000028322/1-737 L-----LQEC PEERKVNMSS IRGKKWNWYL DYLYSEGLHG LKHFIRSSIH bmy_10079T0/1-741 FKRNPRVLEW PKERKVNMSS IWGKKWNWYL DYLFSEGLQG LKLFIRSSIH BACU009100/1-549 L-----LQEW PKERKVNMSS VWGKKWNWYL DYLFSEGLQG LKLFIRSSIH 751 800 ENSP00000362018/1-756 HSSIPRAEGI NCNNQY ENSTTRP00000014490/1-749 RSSVP--AES INHDQH ENSBTAP00000028322/1-737 RSSVP----- ------ bmy_10079T0/1-741 RSSVP----- ------ BACU009100/1-549 RSSVP----- ------