KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:36 2014 Check: 00 .. Name: ENSP00000332528/1-562 Len: 757 Check: 5857 Weight: 1.00 Name: ENSBTAP00000028325/1-563 Len: 757 Check: 8018 Weight: 1.00 Name: ENSTTRP00000002451/1-563 Len: 757 Check: 4571 Weight: 1.00 Name: bmy_15322T0/1-720 Len: 757 Check: 5589 Weight: 1.00 Name: BACU011500/1-569 Len: 757 Check: 1399 Weight: 1.00 // 1 50 ENSP00000332528/1-562 MSEELAQGPK ESPPAPRAGP REVWKKGGRL LSVLLAVNVL LLACTLISGG ENSBTAP00000028325/1-563 MSTELPSDPK ESPPAPRPAP REVWKKGGRL LSVLLAVNVL LLACTLISGG ENSTTRP00000002451/1-563 MSEELPTGPK ESPPAPRAAP REVWKKGGRL LSVLLAVNVL LLACTLISGG bmy_15322T0/1-720 MSEEPPTGPK ESPPAPRAAR REVWKKGGRL LSVLLAVNVL LLACTLISGG BACU011500/1-569 MSEEPPTGPK ESPPAPRAAR REVWKKGGRL LSVLLAVNVL LLACTLISGG 51 100 ENSP00000332528/1-562 AFNKVAVYDT DVFALLTAMM LLATLWILFY LLRTVRCP-- CAVPYRDAHA ENSBTAP00000028325/1-563 AFNKVAVYDT DVFALLTTML LLAMVWILFY LLGTARCP-- DGVPYRDAHA ENSTTRP00000002451/1-563 AFNKVAVYDT DVFALLTTMM LLAVLWILFY LLRTVRCPDT DAVPYRDAHA bmy_15322T0/1-720 AFNKVAVYDT DVFALLTTMM LLAVLWILFY LLRTVRCPDT DAVPHRDAHA BACU011500/1-569 AFNKVAVYDT DVFALLTTMM LLAVLWILFY LLRTVRCPDT DAVPHRDAHA 101 150 ENSP00000332528/1-562 GPIWLR---- GGLVLFGICT LIMDVFKTGY YSSFFECQSA IKILHPLIQA ENSBTAP00000028325/1-563 GPIWLR---- GGLVLFGICT LIMDVFKTGY YSSFFECQSA IKILYPLTQA ENSTTRP00000002451/1-563 GPIWLR---- GGLVLFGICT LVMDVFKTGY YSSSFECQSA IKILYPLTQA bmy_15322T0/1-720 GPIWLR---- GGLVLFGICT LVMDVFKTGY YSSSFECQSA IKIL------ BACU011500/1-569 GPIWLRGARG GGLVLFGICT LVMDVFKTGY YSSSFECQSA IKILYPLTQA 151 200 ENSP00000332528/1-562 VFVIIQTYFL WVSAKDCVHV HLDLTWCGLM FTLTTNLAIW MAAVVDESVH ENSBTAP00000028325/1-563 VFVIVQTYFL WVSAKDCVHT HLDLTRCGLM LTLTTNLAIW MAAVVDESVH ENSTTRP00000002451/1-563 VFVIVQTYFL CISAKDCVHS HLDLTRCGLM FTLTTNLAIW MATVVDESVH bmy_15322T0/1-720 ---------- ---------- ------CGLM FTLTTNLAIW MAAVVDESVH BACU011500/1-569 VFVIVQTYFL CVSAKDCVHT HLDLTRCGLM FTLTTNLAIW MAAVVDESVH 201 250 ENSP00000332528/1-562 QSHSYSSSHS NASHARLISD -QHADNPVGG DSCLCSTAVC QIFQQGYFYL ENSBTAP00000028325/1-563 QSHSHSSSHS NTSHTRLALD LERASSAVGG D-CSCDTAVC QIFQQGYFYL ENSTTRP00000002451/1-563 QAHSLGSPHG NTSHTRLALE --RAGGPVGE D-CSCNTDVC QIFQQGYFYL bmy_15322T0/1-720 QAHSLSSSHG NTSHTRRVLD VARAGSPVGE V-CSCNTAVC QIFQQGYFYL BACU011500/1-569 QAHSLNSSHG NTSHTRRVLE VERAGSPVGE V-CSCNTAVC QIFQQGYFYL 251 300 ENSP00000332528/1-562 YPFNIEYSLF ASTMLYVMWK NVGRFLA-ST PGHSHTPTPV SLFRETFFAG ENSBTAP00000028325/1-563 YPFNIEYSLF ASTMLYVMWK NVGRLLASST PSHSHAPSPV SLFRETFFAG ENSTTRP00000002451/1-563 YPFNIEYSLF ASTMLYVMWK NVGRLMASST RGHSHAPSLL SLFRETFFAG bmy_15322T0/1-720 YPFNIEYSLF ASTMLYVMWK NVGRLLASSA HGHSHTPSLL SLFRETFFAG BACU011500/1-569 YPFNIEYSLF ASTMLYVMWK NVGRLLASSA HGHNHTPSLL SLFRETFFAG 301 350 ENSP00000332528/1-562 PVLGLLLFVV GLAVFIIYEV QVSGDGSRTR QALVIYYSFN IVCLGLTTLV ENSBTAP00000028325/1-563 PVLGLMLFVV GLAVFIIYEV QVSGEQSRTQ QALVTYYSFN IVCLGLMTLV ENSTTRP00000002451/1-563 PILGLMLFVV GLAVFIIYEV QVSGERSHTQ QALVMYYSFN IVCLGLMTLV bmy_15322T0/1-720 PILGLMLFVV GLAVFIVYEV QVSGERGRAQ QALVIYYGFN IVCLGLMTLV BACU011500/1-569 PILGLMLFVV GLAVFIIYEV QVSGERGRAQ QALVIYYSFN IVCLGLMTLV 351 400 ENSP00000332528/1-562 SLSGSIIYRF DRRAMDHHKN PTRTLDVALL MGAALGQYAI SYYSIVAVVA ENSBTAP00000028325/1-563 SLSGSVIYRF DRRAMDQHKN PTRTLDVALL MGAALGQYAI SYYSIVAVVA ENSTTRP00000002451/1-563 SLSGSVIYRF DRRAMDHRKN PTRSLDMALL VGAALGQYAI SYYSIVAAVA bmy_15322T0/1-720 SLSGSVIYRF DRRAMDHRKN PTRSLDVALL VGAALGQYAI SYYSIVAAVA BACU011500/1-569 SLSGSVIYRF DRRAMDHHKN PTRSLDVALL VGAALGQYAI SYYSVVAAVA 401 450 ENSP00000332528/1-562 GTPQDLLAGL NLTHALLMIA QHTFQNMFII ESLHRGPPGA EPHSTHPKEP ENSBTAP00000028325/1-563 GTPRDLLAGL NLAHALLMIA QHTFQNVFII ESLHRGPPSA EPHDTPPKEP ENSTTRP00000002451/1-563 GTPRELLAGL SLAHALLMIA QHTFQNVFII ESLHRVPPGA EPHGTPPKEP bmy_15322T0/1-720 GTPRELLAGL SLAHALLVIA QHTFQNIFIV ESLHRAPPGA EPHGTPPKEP BACU011500/1-569 GTPRELLAGL SLAHALLVIA QHTFQNIFIV ESLHRTPPRA EPHGTPPKEP 451 500 ENSP00000332528/1-562 CQDLTFTNLD ALHTLSACPP NPGLVSPSPS DQREAVAIVS TPRSQWRRQC ENSBTAP00000028325/1-563 CHGLTFANLD ALHTLPACPP TPRLVGPSPA GPQEAASIIV APRSHWRRRC ENSTTRP00000002451/1-563 CHGLTFANLD TLHTLPACPP TPRLVGPSPA GPQGAVSITL APRGHWKYRC bmy_15322T0/1-720 CHGLTFASLD TLHTLPACPP TPRLVGPSPA GPQRAVSIIS APRGHWRCRC BACU011500/1-569 CHGLTFASLD TLHTLPACPP APRLVGPSPA GPQGAVSVIS APRGHWRCRC 501 550 ENSP00000332528/1-562 LKDISLFLLL CNVILWIMPA FGARPHFSNT VEVDFYGYSL WAVIVNICLP ENSBTAP00000028325/1-563 LKDISLFLLL CNIILWIMPA FGARPHFSNT VEVDFYGYSL WAAIVNICLP ENSTTRP00000002451/1-563 LKDISLFLLL CNIILWIMPA FGARPHFSNT VEVDFYGYSL WAAIVNICLP bmy_15322T0/1-720 LKDISLFLLL CNIILWIMPA FGARPHFSNT VEVDFYGYSL WAAIVNICLP BACU011500/1-569 LKDISLFLLL CNIILWIMPA FGARPHFSNT VEVDFYGYSL WAAIVNICLP 551 600 ENSP00000332528/1-562 FGIFYRMHAV SSLLE----- ---------- ---------- ---------- ENSBTAP00000028325/1-563 FGIFYRMHAV SSLLE----- ---------- ---------- ---------- ENSTTRP00000002451/1-563 FGIFYRMHAV SSLLE----- ---------- ---------- ---------- bmy_15322T0/1-720 FGIFYRMHAV SSLLERSWLV RHFSLLLRWD RQAQKAGQLF SGLLALNMVF BACU011500/1-569 FGIFYRMHAV SSLLE----- ---------- ---------- ---------- 601 650 ENSP00000332528/1-562 ---------- ---------- VYVLS----- ---------- ---------- ENSBTAP00000028325/1-563 ---------- ---------- VYVMS----- ---------- ---------- ENSTTRP00000002451/1-563 ---------- ---------- VYMLS----- ---------- ---------- bmy_15322T0/1-720 LGGAFICSMI FNNVAITLGD VWILLAALKA LALLWLLYYT TRTTCRPQAV BACU011500/1-569 ---------- ---------- VYILS----- ---------- ---------- 651 700 ENSP00000332528/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028325/1-563 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002451/1-563 ---------- ---------- ---------- ---------- ---------- bmy_15322T0/1-720 LHQDPHAGPT WVRGECQGAW VDAEGWGGRA LSRGGANSAL ARPGSLVLFG BACU011500/1-569 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000332528/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028325/1-563 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002451/1-563 ---------- ---------- ---------- ---------- ---------- bmy_15322T0/1-720 SCTVCLNVFR VGYGVSHIHC KSQLELIFPA IEIIFIGIQV TRLSHPLAAR BACU011500/1-569 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000332528/1-562 ------- ENSBTAP00000028325/1-563 ------- ENSTTRP00000002451/1-563 ------- bmy_15322T0/1-720 IHTPAYA BACU011500/1-569 -------