KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:36 2014 Check: 00 .. Name: ENSP00000369853/1-696 Len: 711 Check: 8988 Weight: 1.00 Name: ENSBTAP00000028327/1-697 Len: 711 Check: 4403 Weight: 1.00 Name: ENSTTRP00000011996/1-701 Len: 711 Check: 7408 Weight: 1.00 Name: bmy_20664T0/1-680 Len: 711 Check: 665 Weight: 1.00 Name: BACU004401/1-541 Len: 711 Check: 4072 Weight: 1.00 // 1 50 ENSP00000369853/1-696 MAMARLGSWL GEAQWLALVS LFVAALATVG LYLAQWALAR ARPQPQRRAV ENSBTAP00000028327/1-697 --MSRLGSWL DEVLWLVLVA LFVVALGTVG LYLAQWALAR ARPRSRRRAA ENSTTRP00000011996/1-701 ITMSRLDSWL GEVQWLGLVA LFVVALGTVG LYLAQWALAR ARPRSPRRAA bmy_20664T0/1-680 MGMHRAEDGV EPGDPGGQEP GSPGGTRSLG MAPAQGHFQP RNPKFQGEAA BACU004401/1-541 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000369853/1-696 EPGEGPRPGS DALLSWILTL GSWRSQWQAA WVTALNEEAE RKGGPPFLSF ENSBTAP00000028327/1-697 EPGDCQRPES DALLAWILTL NSWRSQWQAA WVTALNDEAK RKGGPLLLCF ENSTTRP00000011996/1-701 EPGEGQRPEP DALLAWIVTL SIWRKQWQAA WVAALNDEAK RRAGPPLLCF bmy_20664T0/1-680 TASHCPRPGS HSRAVW---- ---------- ---------- --AGPPLLCF BACU004401/1-541 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000369853/1-696 EEDPRQQALE LVVQEVSSVL RSAEEKVVVC HVVGQAIQFL VSETP--ALG ENSBTAP00000028327/1-697 QEDLLQPPLE LTVQQVSSVA RSAQEKVVFC HVVGETIQFL VSAGPPSPED ENSTTRP00000011996/1-701 QEDPLQQPLE LAMGQVSSVT QSAQEKVVFC HVVGETIQFL VSVGLPSSED bmy_20664T0/1-680 QEDPLQQPLE LAMGQVSSVA QSAQEKVVFC HVVAXTIQFL VSVGLPSSED BACU004401/1-541 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000369853/1-696 AGCRLYDMRL SPFHLQLEFH MKEKREDLQI SWSFISVPEM AVNIQPKALG ENSBTAP00000028327/1-697 AGRSLYGVRL SPLHLQLELH MKEKREDIQI KWSFISAPEM AITVQPKVPG ENSTTRP00000011996/1-701 TGRPLYSVRL SPLHLQLELH MKEKREDIQV KWSFISAPEM AITVQPKAPG bmy_20664T0/1-680 TGRPLYSVRL SPLHLQLELH MKEKREDIQI KWSFISAPEM AITIQPKAPG BACU004401/1-541 ---------- ------LELH MKEKREDIQI KWSFISAPEM AITIQPKAPG 201 250 ENSP00000369853/1-696 EDQVAETSAM SDVLKDILKH LAGSASPSVV LITKPTTVKE AQNLQCAAST ENSBTAP00000028327/1-697 EDPVAGTEAV SESLKDILKH LISSASPSVV LSTTPADLRE VQHLQRTSST ENSTTRP00000011996/1-701 EDQAVGADAV SESLKDIVKH LVSSASPSAV LSTKPTDVRG VQHLQRTSST bmy_20664T0/1-680 EDQAVGADAV SESLKDILKH LVSSASPSVV LRTKPMDVRE VQHLQRTSST BACU004401/1-541 EDQAVGADAV SESLKDILKH LVSSASPSVV LSTKPTDVRE VQHLQCTSST 251 300 ENSP00000369853/1-696 AQESCPPKPP RAHELKLLVR NIHVLLLSEP GASGHINAVC VVQLNDPVQR ENSBTAP00000028327/1-697 -QESCPPKPP RAHDLKLLVK NIRVSLLSHP GASGNVNPVC IVRLNDPVQK ENSTTRP00000011996/1-701 -QESCPPKPP RAHELKLLVK NIRASLLSHP GASGNINPVC VVQLNDPIQK bmy_20664T0/1-680 -QESCPPKPP RAHELKLLVK NIRASLMSHP GASGNINPVC VVQLNDPIQK BACU004401/1-541 -QESCPPKPP RAHELKLLVK NIRASLMSHP GASGNINPVC VVQLNDPVQK 301 350 ENSP00000369853/1-696 FSSTLTKNTP DLMWEEEFTF ELNAKSKELH LQISEAGRSS EGLLATATVP ENSBTAP00000028327/1-697 FSSTLSRNTT ALTWEEEFTF ELNAKSRELH LQISDDGQSS EALLAMTTVP ENSTTRP00000011996/1-701 FSSTLSRNTT TLTWEEEFTF ELNAKSRELH LQISEDGRSS EALLAMTTVP bmy_20664T0/1-680 FSSTLSKNTT TLTWEEEFTF ELNAKSRELH LQISEDGQSS EALLAMTTVP BACU004401/1-541 FSSTLSKNTT TLTWEEEFTF ELNAKSRELH LQISEDGQSS EALLAMTTVP 351 400 ENSP00000369853/1-696 LDLFKKQPSG PQSFTLTSGS ACGSSVLGSV TAEFSYMEPG ELKSWPIPPP ENSBTAP00000028327/1-697 LDLFKKQPSG PQSFTLTSGA SLGSSALGSV TAEFSYIEPG EVKPWQMPPP ENSTTRP00000011996/1-701 LDLFKKQPSG PQSFTLTSGS SSGSSALGSV TAEFSYIEPG EAKSWQLPPS bmy_20664T0/1-680 LDLFKKQPSG PQSFTLTSGS SSGSSALGSV TAEFSYIEPG EAKSWQMPPP BACU004401/1-541 LDLFKKQPSG PQSFTLTSGS SSGSSALGSV TAEFSYIEPG EAKSWQMPPP 401 450 ENSP00000369853/1-696 VPAAKIEKDR TVMPCGTVVT TVTAVKTKPR VDVGRASPLS SDSPVKTPIK ENSBTAP00000028327/1-697 VPAAKIEKDR TVMPCGTVVT AVTAVRTKPR FDAGRASPMG SESPLRTPVK ENSTTRP00000011996/1-701 VPAAKIEKDR TVMPCGTVVT TVTAVKTKPR FDAGRASPLS SESPLRTPVK bmy_20664T0/1-680 VPAAKIEKDR TVMPCGTVVT TVTAVKTKPR FDAGRASPLS SESPLRTPVK BACU004401/1-541 VPAAKIEKDR TVMPCGTVVT TVTAVKTKPR FDAGRASPLS SESPLRTPVK 451 500 ENSP00000369853/1-696 VKVIEKDISV QAIACRSAPV SKTLSSSDTE LLVLNGSDPV AEVAIRQLSE ENSBTAP00000028327/1-697 VKVIEKDISV EAISCHGAPV SKTFSSSDTE LLVLNGADPV AEVAIRQLSE ENSTTRP00000011996/1-701 VKVIEKDISI QAISCHGAPV SKMFSSSDTE LLVLSGADPV AEVAIRQLSE bmy_20664T0/1-680 VKVIEKDISI QAISCHGAPV SKMFSSSDTE LLVLNGADPV AEVAIRQLSE BACU004401/1-541 VKVIEKDISI QAISCHGAPV SKMFSSSDTE LLVLNGADPV AEVAIRQLSE 501 550 ENSP00000369853/1-696 SSKLKLKSPR KKSTIIISGI SKTSLSQDHD AALMQGYTAS VDSTHQEDAP ENSBTAP00000028327/1-697 SSKLKLKSPR KKSTIIISGV SKTSLSQDSD AALMLDYAAS MDGAHQEDAP ENSTTRP00000011996/1-701 SSKLKLKSPR KKSTIVISGV SKTSLSQDND ASLMLDYAAS MDSTCQKGAP bmy_20664T0/1-680 SSKLKLKSPR KKSTIIISGV SKTSLSQDND ASLMLDYAAS MDSTRQKDAP BACU004401/1-541 SSKLKLKSPR KKSTIIISGV SKTSLSQDNG ASLMLDYAAS MDSARQKDGP 551 600 ENSP00000369853/1-696 -SHPERAAAS APP------- -EEAESAQAS LAPKPQEDEL DSWDLEKEPQ ENSBTAP00000028327/1-697 QDQPEAAVTS APP------- --EEAPVGTL PALEPQEIEL DSWDLEKEPP ENSTTRP00000011996/1-701 -DQPGAAVAP APP------- -EEGKETQGP LALEPQETEL DSWDLEEEPP bmy_20664T0/1-680 -DQPGAAVAS APP-EEEEEE EEEGTPAGAR LALEPQETEL DSWDSEKEPP BACU004401/1-541 -GQPGAAVAA APPEEEEEEE EEEETPAGAR LALEPQETEL DSWDSEKEPL 601 650 ENSP00000369853/1-696 AAA--WSSQV LLDPDGDELS ESSMSV--LE PGTAKKHKGG ILRKGAKLFF ENSBTAP00000028327/1-697 AGA--WGGQA LQDPEGDELS ESSLSVSELE PAAAKKHKGG ILRKGAKLFF ENSTTRP00000011996/1-701 AGAGAWGGPA PRDPAGDELS EHSLSVSELE PGTSQKRKGG ILRNGAKLFF bmy_20664T0/1-680 AGA--WGGQA PLEPAGDEQS ESSLSVSELE PGASQKRKGG ILRKGAKLFF BACU004401/1-541 AGA--WGGQA PLDPAGDERS ESSLSVSELE PGASQKRKGG ILRKGAKLFF 651 700 ENSP00000369853/1-696 RRRHQQKDPG MSQSHNDLVF LEQPEGSRRK GITLTRILNK KLLSRHRNKN ENSBTAP00000028327/1-697 RRRHQQKDPG LSQSHNDLVF LQQPDGARRK GVTLSRILNK KLLSRHRGQS ENSTTRP00000011996/1-701 RRRHQQKDPG LSQSHNDLVF LQQPAGLRRK GSTLARFLNK KLLSRHRGQS bmy_20664T0/1-680 RRRHQQKDPG LSQSHNDLVF LQQPAGPRRK GATLARILNK KLLSRHRGQS BACU004401/1-541 RRRHQQKDPG LSQSHNDLVF LQQPAGPRRK GATLARILNK KLLSRHRGQS 701 750 ENSP00000369853/1-696 TMNGAPVEPC T ENSBTAP00000028327/1-697 TLNGAPSDPC P ENSTTRP00000011996/1-701 TANGAPLDPC P bmy_20664T0/1-680 TANGAPLDPC P BACU004401/1-541 TANGAPLDPC P