KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:37 2014 Check: 00 .. Name: BACU000727/1-1011 Len: 1013 Check: 8173 Weight: 1.00 Name: ENSP00000416787/1-608 Len: 1013 Check: 553 Weight: 1.00 Name: ENSBTAP00000028329/1-606 Len: 1013 Check: 7643 Weight: 1.00 Name: bmy_11793T0/1-608 Len: 1013 Check: 9264 Weight: 1.00 Name: ENSTTRP00000016173/1-607 Len: 1013 Check: 7474 Weight: 1.00 // 1 50 BACU000727/1-1011 MRNIIIQCLL YGSL-TLGIW TT-IFIYFHH NHVKNQEKKI QEKGNPLIWS ENSP00000416787/1-608 MGSVTVRYFC YGCLFTSATW TVLLFVYFNF SEVTQPLKNV PVKGS----- ENSBTAP00000028329/1-606 MGSVTVRYFC YGCLFTSAAW TLLLFIYFNF SEVTQPLKNV PIKGS----- bmy_11793T0/1-608 MGSVTVRYFC YGCLFTSATW TVLLFVYFNF SEVTQPLKNV PIKGS----- ENSTTRP00000016173/1-607 MGSVTVRYFC YGCLFTSAAW TVLLFVYFNF SEVTQPLKNV PIKGS----- 51 100 BACU000727/1-1011 LGKKLQTEHG SVQIPRPYVR VKRPNEDETT EQKSFIKLGK DFNYSDPELI ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------- bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------- 101 150 BACU000727/1-1011 HGYSKYGFNS IISKNLGNHR DVPDTRNKMC HKKQYPSNLP TASIVICFHN ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------- bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------- 151 200 BACU000727/1-1011 EEFNALFRTV SSVMTLTPQR ILEEIILVDD MSEFDNLKEK LDYHLEIFRG ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------- bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------- 201 250 BACU000727/1-1011 KIKLIRNKKR EGLIRARLIG ASRASGDVLV FLDSHCEVNK VWLEPLLNAI ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------- bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------- 251 300 BACU000727/1-1011 AKDPRMVVCP LIDVIDYVTL EYQPSPVVRG AFNWYLQFKW DHVFSYEMDG ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------G ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------G bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------G ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------G 301 350 BACU000727/1-1011 PEGPTRPIRS PAMAGGIFAI NRHYFNEIGQ YDKGMNLWGG ENLELSLRIW ENSP00000416787/1-608 PHGP------ ---------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 PHGP------ ---------- ---------- ---------- ---------- bmy_11793T0/1-608 PHGP------ ---------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 PHGP------ ---------- ---------- ---------- ---------- 351 400 BACU000727/1-1011 MCGGQLFILP CSRVGHIDKQ HIANHTGIVK ALAYNNLRLA HVWLDDYKIF ENSP00000416787/1-608 ---------- ---------- ---------- ---------- ---------S ENSBTAP00000028329/1-606 ---------- ---------- ---------- ---------- ---------F bmy_11793T0/1-608 ---------- ---------- ---------- ---------- ---------F ENSTTRP00000016173/1-607 ---------- ---------- ---------- ---------- ---------F 401 450 BACU000727/1-1011 FSIFYVPFTV RSEGSTVSKE TATKGPSQVL ESQFKANKID DVIENHIEDP ENSP00000416787/1-608 PKKFYPRF-- ---------- --TRGPSRVL EPQFKANKID DVIDSRVEDP ENSBTAP00000028329/1-606 PKKFYPRF-- ---------- --TRGPS--L ESQFKANKID DMIDNHVEDP bmy_11793T0/1-608 PKKFYPRF-- ---------- --TRGPSQVL ESQFKANKID DVIENHIEDP ENSTTRP00000016173/1-607 PKKFYPRF-- ---------- --TRGPSQVL ESQFKANKID DLIENHIEDP 451 500 BACU000727/1-1011 ERGNMKFSSE LVELVFHDQI LRNAVTRASF CEERLKVLCG KEKARGGFIV ENSP00000416787/1-608 EEGHLKFSSE L--------- ---------- ---------- ---------- ENSBTAP00000028329/1-606 ERGNVKFSSE L--------- ---------- ---------- ---------- bmy_11793T0/1-608 ERGNMKFSSE L--------- ---------- ---------- ---------- ENSTTRP00000016173/1-607 ERGNMKFSSE L--------- ---------- ---------- ---------- 501 550 BACU000727/1-1011 LGKGMIFNAR DQELRDLGYQ KHAFNMLISN RLGYRRDVPD TRTAACKDRS ENSP00000416787/1-608 ---GMIFNER DQELRDLGYQ KHAFNMLISD RLGYHRDVPD TRNAACKEKF ENSBTAP00000028329/1-606 ---GMIFNER DQELRDLGYQ KHAFNMLISN RLGYHRDVPD TRNAACKDKS bmy_11793T0/1-608 ---GMIFNER DQELRDLGYQ KHAFNMLISN RLGYHRDVPD TRNAACKDRS ENSTTRP00000016173/1-607 ---GMIFNER DQELRDLGYQ KHAFNMLISN RLGYHRDVPD TRNAACKDRS 551 600 BACU000727/1-1011 YPTDLPVASV VICFYNEAFS ALLRTVHSVL DRTPARLLHE IILVDDDSDF ENSP00000416787/1-608 YPPDLPAASV VICFYNEAFS ALLRTVHSVI DRTPAHLLHE IILVDDDSDF ENSBTAP00000028329/1-606 YPADLPVASI VICFYNEALS ALLRTVHSVL DRTPARLLHE IILVDDDSDF bmy_11793T0/1-608 YPTDLPVASV VICFYNEAFS ALLRTVHSVL DRTPARLLHE IILVDDDSDF ENSTTRP00000016173/1-607 YPTDLPVASV VICFYNEAFS ALLRTVHSVL DRTPARLLHE IILVDDDSDF 601 650 BACU000727/1-1011 DDVKGELDEY IQKYLPGKIK VIRNTKREGL IRGRMIGAAH ATGEVLVFLD ENSP00000416787/1-608 DDLKGELDEY VQKYLPGKIK VIRNTKREGL IRGRMIGAAH ATGEVLVFLD ENSBTAP00000028329/1-606 DDLKGELDEY IQKYLPGKIK VIRNPKREGL IRGRMIGAAH ATGEVLVFLD bmy_11793T0/1-608 DDVKGELDEY IQKYLPGKIK VIRNTKREGL IRGRMIGAAH ATGEVLVFLD ENSTTRP00000016173/1-607 DDVKGELDEY IQKYLPGKIK VIRNTKREGL IRGRMIGAAH ATGEVLVFLD 651 700 BACU000727/1-1011 SHCEVNVMWL QPLLAAIRGD RQAVVCPAID IISADTLAYS SSPVVRGGFN ENSP00000416787/1-608 SHCEVNVMWL QPLLAAIRED RHTVVCPVID IISADTLAYS SSPVVRGGFN ENSBTAP00000028329/1-606 SHCEVNVLWL QPLLAAIRED RRTVVCPVID IISADTLAYS SSPVVRGGFN bmy_11793T0/1-608 SHCEVNVMWL QPLLAAIRED RQMVVCPVID IISADTLAYS SSPVVRGGFN ENSTTRP00000016173/1-607 SHCEVNVMWL QPLLAAIRED RQMVVCPVID IISADTLAYS SSPVVRGGFN 701 750 BACU000727/1-1011 WGLHFKWDLV PLSELGGADG ATAPIKSPTM AGGLFAMNRN YFNELGQYDS ENSP00000416787/1-608 WGLHFKWDLV PLSELGRAEG ATAPIKSPTM AGGLFAMNRQ YFHELGQYDS ENSBTAP00000028329/1-606 WGLHFKWDLV PLSELGGPEG ATAPIKSPTM AGGLFAMNRN YFNELGQYDS bmy_11793T0/1-608 WGLHFKWDLV PLSELGGTDG ATAPIKSPTM AGGLFAMNRN YFSELGQYDS ENSTTRP00000016173/1-607 WGLHFKWDLV PLSELGGTDG ATAPIKSPTM AGGLFAMNRN YFSELGQYDS 751 800 BACU000727/1-1011 GMDIWGGENL EISFRIWMCG GKLFIIPCSR VGHIFRKRRP YGSPEGQDTM ENSP00000416787/1-608 GMDIWGGENL EISFRIWMCG GKLFIIPCSR VGHIFRKRRP YGSPEGQDTM ENSBTAP00000028329/1-606 GMDIWGGENL EISFRIWMCG GKLFIIPCSR VGHIFRKRRP YGSPEGQDTM bmy_11793T0/1-608 GMDIWGGENL EISFRIWMCG GKLFIIPCSR VGHIFRKRRP YGSPEGQDTM ENSTTRP00000016173/1-607 GMDIWGGENL EISFRIWMCG GKLFIIPCSR VGHVFRKRRP YGSPEGQDTM 801 850 BACU000727/1-1011 THNSLRLAHV WLDEYKEQYF SLRPDLRTRS YGNISERVEL RKKLDCKSFK ENSP00000416787/1-608 THNSLRLAHV WLDEYKEQYF SLRPDLKTKS YGNISERVEL RKKLGCKSFK ENSBTAP00000028329/1-606 THNSLRLAHV WLDEYKEQYF SLRPDLRTRN YGNISERVEL RKKLDCKSFK bmy_11793T0/1-608 THNSLRLAHV WLDEYKEQYF SLRPDLRTRS YGNISERVEL RKKLDCKSFK ENSTTRP00000016173/1-607 THNSLRLAHV WLDEYKEQYF SLRPDLRTRS YGNISERVEL RKKLNCKSFK 851 900 BACU000727/1-1011 WYLDNIYPEM QISGPNAKPQ QPIFINRGPK RPKVLQRGRL CHLQTHKCLA ENSP00000416787/1-608 WYLDNVYPEM QISGSHAKPQ QPIFVNRGPK RPKVLQRGRL YHLQTNKCLV ENSBTAP00000028329/1-606 WYLDNIYPEM QISGPNVKPQ QPIFINRGPK RPKVLQRGRL YHLQTNKCLV bmy_11793T0/1-608 WYLDNIYPEM QISGPNAKPQ QPIFINRGPK RPKVLQRGRL YHLQTHKCLA ENSTTRP00000016173/1-607 WYLDNIYPEM QISGSNAKPQ QPIFINRGPK RPKVLQRGRL YHLQTHKCLA 901 950 BACU000727/1-1011 AQGRPSQKGG LVVLKACDYS DPNQIWIYNE EHELVLNNLL CLDMSETRSA ENSP00000416787/1-608 AQGRPSQKGG LVVLKACDYS DPNQIWIYNE EHELVLNSLL CLDMSETRSS ENSBTAP00000028329/1-606 AQGRPSEKGG LVVLKACDYS DPNQVWIYNE EHELVLNNLL CLDMSETRSS bmy_11793T0/1-608 AQGHPSQKGG LVVLKACDYS DPNQIWIYNE EHELVLNNLL CLDMSETRSA ENSTTRP00000016173/1-607 AQGRPSQKGG LVVLKACDYS DPNQIWIYNE EHELVLNNLL CLDMSETRSS 951 1000 BACU000727/1-1011 DPPRLMKCHG SGGSQQWTFG RNNRLYQVSV GQCLRAVDPL SRGGFVAMAI ENSP00000416787/1-608 DPPRLMKCHG SGGSQQWTFG KNNRLYQVSV GQCLRAVDPL GQKGSVAMAI ENSBTAP00000028329/1-606 DPPRLMKCHG SGGSQQWTFG RNNRLYQVSV GQCLRAVDPL SRKGSVAMAI bmy_11793T0/1-608 DPPRLMKCHG SGGSQQWTFG RNNRLYQVSV GQCLRAVDPL SRRGFVAMAI ENSTTRP00000016173/1-607 DPPRLMKCHG SGGSQQWTFG RNNRL-QVSV GQCLRAVDAL SRRGFVAMAI 1001 1050 BACU000727/1-1011 CDGSSSQQWH LEG ENSP00000416787/1-608 CDGSSSQQWH LEG ENSBTAP00000028329/1-606 CDGSPSQQWH LES bmy_11793T0/1-608 CDGSSSQQWH LEG ENSTTRP00000016173/1-607 CDGSSSQQWH LEG