KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:35:37 2014 Check: 00 .. Name: ENSP00000308759/1-1066 Len: 1075 Check: 532 Weight: 1.00 Name: ENSBTAP00000028333/1-847 Len: 1075 Check: 9510 Weight: 1.00 Name: bmy_20665T0/1-837 Len: 1075 Check: 8903 Weight: 1.00 Name: ENSTTRP00000011997/1-1047 Len: 1075 Check: 949 Weight: 1.00 // 1 50 ENSP00000308759/1-1066 MEGLLHYINP AHAISLLSAL NEERLKGQLC DVLLIVGDQK FRAHKNVLAA ENSBTAP00000028333/1-847 MEGLLHYINP AHAISLLSAL NEERLKGQLC DALLIVGDQK FRAHKNVLAA bmy_20665T0/1-837 MEGLLHYINP AHAISLLSAL NEERLKGQLC DVLLIVGDQK FRAHKNVLAA ENSTTRP00000011997/1-1047 MEGLLHYINP AHAISLLSAL NEERLRGQLC DVLLIVGDQK FRAHKNVLAA 51 100 ENSP00000308759/1-1066 SSEYFQSLFT NKENESQTVF QLDFCEPDAF DNVLNYIYSS SLFVEKSSLA ENSBTAP00000028333/1-847 SSEYFQSLFT NKENEAQTVF QLDFCEPDAF DNVLNYIYSS SLFVEKSSLA bmy_20665T0/1-837 SSEYFQSLFT NQENESQTVF QLDFCEPDAF DNVLNYIYSS SLFVEKGSLA ENSTTRP00000011997/1-1047 SSEYFQSLFT SQENGSQTVF QLDFCEPDAF DNVLNYIYSS SLFVEKGSLA 101 150 ENSP00000308759/1-1066 AVQELGYSLG ISFLTNIVSK TPQAPFPTCP NRKKVFVEDD ENSSQKRSVI ENSBTAP00000028333/1-847 AVQELGYSLG ISFLTNIASK TPQAPFPTCP NRKKTFTEDE ENSSQKRSVI bmy_20665T0/1-837 AVQELGYSLG ISFLTNIASK TPQAPFPTCP NRKKPFAEDD ENSSQKRSVI ENSTTRP00000011997/1-1047 AVQELGYSLG ISFLTNIASK TPQAPFPTCP NRKKPFTEDD ENSSQKRSVI 151 200 ENSP00000308759/1-1066 VCQSRNEAQG KTVSQNQPDV SHTSRPSPSI AVKANTNKPH VPKPIEPLHN ENSBTAP00000028333/1-847 VCQSRNEAPG KAGSQNTPEL SHPPRPSASI AVKANASKPP GPKPTEPPHH bmy_20665T0/1-837 VCQSRNEAPG KTVSQNPADL SHPPRPSPGI AVQANASKAP GPKPTEPAHH ENSTTRP00000011997/1-1047 VCQSRNEAQG KTVGQNPADL SHPPRPSPGI AVQANASKAP GPKPTEPAHH 201 250 ENSP00000308759/1-1066 LSLTEKSWPK DSSVVYAKSL EHSGSLDDPN RISLVKRNAV LPSKPLQDRE ENSBTAP00000028333/1-847 VAPAEKSWPK DGPAVLARPP ELAGPLEEPS RGGLAKRAVA PPSKPPPDRA bmy_20665T0/1-837 VAAAEKSRPK DGPAGLAGP- ---------- ---------- ---------- ENSTTRP00000011997/1-1047 VAAAEKSRPK DGPAGLARPP ELAGPSEEPS RGGLAKRGAA PPPKPPQDRG 251 300 ENSP00000308759/1-1066 AMDDKPGVSG QLPKGKALEL ALKRPRPPVL SVCSSSETPY LLKETNKGNG ENSBTAP00000028333/1-847 AVDERPGASA LLPKGVAVEL ALRSPRPPVL SLRGSPETPF LLKEAGRGSG bmy_20665T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011997/1-1047 AADERPGAST PLPRGVAVEL ALRSPRPPVL SLRGAPETPF LLKEAGRGGG 301 350 ENSP00000308759/1-1066 QGEDRNLLYY SKLGLVIPSS GSGSGNQSID RSGPLVKSLL RRSLSMDSQV ENSBTAP00000028333/1-847 PGEDRNLLYY SRLGLVIPAG APAPGTQGVD RSGPLVKSLL RRSLSMDSQV bmy_20665T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011997/1-1047 PGEDRNLLYY SRLGLVIPAG GPVPGGQGVD RSGPLVKSLL RRSLSMDSQV 351 400 ENSP00000308759/1-1066 PVYSPSIDLK SSQGSSSVSS DAPGNVLCAL -SQKSSLKDC SEKTALDDRP ENSBTAP00000028333/1-847 PVYTPTAELQ APPG--AGSG DVAGSVLSAF SSQRPPSKDG GETVAPDTRT bmy_20665T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011997/1-1047 PVFAPAADLQ PPQGSCSGSG DAAGSSLGAF -SQGPSSRDA SEAAAPDARA 401 450 ENSP00000308759/1-1066 QVLQPHRLRS FSASQSTDRE GASPVTEVRI KTEPSSPLSD PSDIIRVTVG ENSBTAP00000028333/1-847 PAPQPHRLRS FSASQPAERP GAPQGPEVRV KAEPRSP-PE PCDIIRVTVG bmy_20665T0/1-837 ---------- ---------- ---------- ------P-PE PGDIIRVTVG ENSTTRP00000011997/1-1047 PAPQPHRLRS FSASQPAERP GAAPGPEVRV KAEPRSP-PE PGDIIRVTVG 451 500 ENSP00000308759/1-1066 DAATTAAASS SSVTRDLSLK TEDDQKDMSR LPAKRRFQAD RRLPFKKLKV ENSBTAP00000028333/1-847 DAAAA----- ---TRDLALQ TEDDRKDPSR LPAKRRFQTD RRLPAKQPKA bmy_20665T0/1-837 DAAAA----- ---TRDLVPQ ADDDRQDASR LPAKRRFQAD RRLPAKQPKA ENSTTRP00000011997/1-1047 DAAAT----- ---TRDLVPQ ADDDRQDASR LPAKRRFQAD RRLPAKQPKA 501 550 ENSP00000308759/1-1066 NEHGSPVSED NFEEGSSPTL LDADFPDSDL NKDEFGELEG TRPNKKFKCK ENSBTAP00000028333/1-847 ESPGSPGSGD PREEGSSPSA LRADFPGSDL NKDEF----- ---------- bmy_20665T0/1-837 EGRVSPGAGD PGEERSGPPL LEADFPGSGL SKDEFAELEG ARPNKKFKCK ENSTTRP00000011997/1-1047 EGRGSPGAGD PRAERSSPPL LEADFPGSDL SKDEFGELEG ARPNKKFKCK 551 600 ENSP00000308759/1-1066 HCLKIFRSTA GLHRHVNMYH NPEKPYACDI CHKRFHTNFK VWTHCQTQHG ENSBTAP00000028333/1-847 ---------- ---------- ---------- ---------- ---------- bmy_20665T0/1-837 HCLKIFRSTA GLHRHVNMYH NPEKPYACDI CHKRFHTNFK VWTHCQTQHG ENSTTRP00000011997/1-1047 HCLKIFRSTA GLHRHVNMYH NPEKPYACDI CHKRFHTNFK VWTHCQTXXX 601 650 ENSP00000308759/1-1066 IVKNPSPASS SHAVLDEKFQ RKLIDIVRER EIKKALIIKL RRGKPGFQGQ ENSBTAP00000028333/1-847 ---------- ---------- ---------- ---------- ---------- bmy_20665T0/1-837 IVKNPSPAAS SHAVLDEKFQ RKLIDIVRER EIKKALILKL RRGRPGFQGP ENSTTRP00000011997/1-1047 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLILKL RRGRPGFQGP 651 700 ENSP00000308759/1-1066 SSSQAQQVIK RNLRSRAKGA YICTYCGKAY RFLSQFKQHI KMHPGEKPLG ENSBTAP00000028333/1-847 ---------- ---------- ---------- ---------- ---------- bmy_20665T0/1-837 GGSPA-QAIK RSLRSRAKGA YVCTACGKAY RFLSQLKQHV KMHPGEKALG ENSTTRP00000011997/1-1047 VRSPV-QAIK RSLRSRAKGA YVCTACGKAY RFLSQLKQHV KMHPGEKALG 701 750 ENSP00000308759/1-1066 VNKVAKPKEH APLASPV-EN KEVYQCRLCN AKLSSLLEQG SHERLCRNAA ENSBTAP00000028333/1-847 ---------- ---------- ---------- -------EQG NHERLCRTAT bmy_20665T0/1-837 AGRAARPRER VVPGGPAGGG SELYLCRLCN AKLSSLLEQG SHERLCRTAT ENSTTRP00000011997/1-1047 AGRATRPRER AAPGGPAGGG SELYLCRLCN AKLSSLLEQG SHERLCRTAT 751 800 ENSP00000308759/1-1066 VCPYCSLRFF SPELKQEHES KCEYKKLTCL ECMRTFKSSF SIWRHQVEVH ENSBTAP00000028333/1-847 VCPYCSLRFF SPELKREHEG KCEFRKLTCL ECMRTFKSAF SIWRHQVEVH bmy_20665T0/1-837 VCPYCSLRFF SPELKREHEG KCEYRKLTCL ECMRTFKSAF SIWRHQVEVH ENSTTRP00000011997/1-1047 VCPYCSLRFF SPELKREHEG KCEYRKLTCL ECMRTFKSAF SIWRHQVEVH 801 850 ENSP00000308759/1-1066 NQNNMAPTEN FSLPVLDHNG DVTGSSRPQS QPEPNKVNH- -----IVTTK ENSBTAP00000028333/1-847 NQNSMAPAAG TSPPRPDLNG EATGPARPLV PPEPGRADP- ----AATAAK bmy_20665T0/1-837 NQNSMAPAAG ASPPRPDLNG EASGPARPPA LPEAGRADPA AAAAATTAAE ENSTTRP00000011997/1-1047 NQNSMAPAAG ASPPRPDLNG EASGPTRPQA LPEPGRADH- -----TAAAE 851 900 ENSP00000308759/1-1066 DDNV-FSDSS EQVNFDSEDS SCLPEDLSLS KQLKIQVKEE PVEEAEEEAP ENSBTAP00000028333/1-847 DDPAGGGRGP EPVNFDSEDS TCLPEDLSLS KPLKIQVKEE PPEEAEEEAP bmy_20665T0/1-837 DDPA-GGHGP EPVNFDPEDS PCLPEDLSLS RPLKVQVKEE PAEGPEEEAP ENSTTRP00000011997/1-1047 DDPA-GGRGP EPVNFDPEDA PCLPEDLSLS RPLKVQVKEE PAEGAEEEAP 901 950 ENSP00000308759/1-1066 EASTAPKEAG PSKEASLWPC EKCGKMFTVH KQLERHQELL CSVKPFICHV ENSBTAP00000028333/1-847 EAGAAPKD-- ------LWPC EKCGKTFPAP KQLERHQELL CSVKPFICHV bmy_20665T0/1-837 EPGAAPKD-- ------LWPC EKCGKTFPAP KQLERHQELL CSVKPFICHV ENSTTRP00000011997/1-1047 EPGAAPKD-- ------LWPC EKCGKTFPAP KQLERHQELL CSVKPFICHV 951 1000 ENSP00000308759/1-1066 CNKAFRTNFR LWSHFQSHMS QASEESAHKE SEVCPVPTNS PSPPPLPPPP ENSBTAP00000028333/1-847 CNKAFRTNFR LWSHFQSHMA QASEDPAHRD PEAGPGPAGS PSPPPLPP-- bmy_20665T0/1-837 CNKAFRTNFR LWSHFQSHMA QAAEDPAHRE PEVGPGPTGS PSPPPLPP-- ENSTTRP00000011997/1-1047 CNKAFRTNFR LWSHFQSHMA QAAEDPAHRE PEVGPGPTGS PSPPPLPP-- 1001 1050 ENSP00000308759/1-1066 PLPKIQPLEP DSPTGLSENP TPATEKLFVP QESDTLFYHA PPLSAITFKR ENSBTAP00000028333/1-847 PLPKIQPLEP DSPTGLPETP TPTADKLFAP RESDTLFYHA PPLSAITFKR bmy_20665T0/1-837 PLPKIQPLEP XSPTGLPENP APSADKLFAA RESDTLFYHA PPLSAITFKR ENSTTRP00000011997/1-1047 PLPKIQPLEP DSPTGLPENP APGADKLFAA RESDTLFYHA PPLSAITFKR 1051 1100 ENSP00000308759/1-1066 QFMCKLCHRT FKTAFSLWSH EQTHN ENSBTAP00000028333/1-847 QFMCKLCHRT FKTAFSLWSH EQTHN bmy_20665T0/1-837 QFMCKLCHRT FKTAFSLWSH EQTHS ENSTTRP00000011997/1-1047 QFMCKLCHRT FKTAFSLWSH EQTHS