KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:38 2014 Check: 00 .. Name: ENSBTAP00000028337/1-1167 Len: 1394 Check: 2393 Weight: 1.00 Name: ENSP00000461625/1-1130 Len: 1394 Check: 3549 Weight: 1.00 Name: ENSTTRP00000007209/1-1249 Len: 1394 Check: 1324 Weight: 1.00 Name: bmy_08657T0/1-1155 Len: 1394 Check: 2655 Weight: 1.00 Name: BACU001277/1-1151 Len: 1394 Check: 3572 Weight: 1.00 // 1 50 ENSBTAP00000028337/1-1167 PICPALSPGT QARGVQCTGP GPPPHDPSPR GIRRGVFASS RHATTRAQLK ENSP00000461625/1-1130 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007209/1-1249 ---------- ---------- ---------- ---------- ---------- bmy_08657T0/1-1155 ---------- ---------- ---------- ---------- ---------- BACU001277/1-1151 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000028337/1-1167 MAAAVLSGPS AGSAAAVPGG PGGLSAVGSG PRLRLMLLES VSGLLQPRTG ENSP00000461625/1-1130 MAAAVLSGPS AGSAAGVPGG TGGLSAVSSG PRLRLLLLES VSGLLQPRTG ENSTTRP00000007209/1-1249 MAAAVLSGPS AGSAAGVPGG TGGLSAVNSG PRLRLLLLES VSGLLQPRAG bmy_08657T0/1-1155 MAAAVLSGPS AGSAAGVPGG TGGLSAVNSG PRLRLLLLES VSGLLQPRAG BACU001277/1-1151 MAAAVLSGPS AGSAAGVPGG TGGLSAVNSG PRLRLLLLES VSGLLQPRAG 101 150 ENSBTAP00000028337/1-1167 SAVAPVHPPA RSAPHLPGLM CLLRLHGTVG GAQNLSAVGA LVGLSNARLG ENSP00000461625/1-1130 SAVAPVHPPN RSAPHLPGLM CLLRLHGSVG GAQNLSALGA LVSLSNARLS ENSTTRP00000007209/1-1249 STVSPVHPPT RSVPHLPGLM CLLRLHGTVG GAQNLSAVGA LVGLSNARLG bmy_08657T0/1-1155 STVSPVHPPV RSVPHLPGLM CLLRLHGTVG GAQNLSAVGA LVGLSNARLG BACU001277/1-1151 STVSPVHPPV RSVPHLPGLM CLLRLHGTVG GAQNLSAVGA LVGLSNARLG 151 200 ENSBTAP00000028337/1-1167 SIKTRFEGLC LLSLLVGESP TEMFQQHCVS WLRSIQQILQ SQDPPPTMEL ENSP00000461625/1-1130 SIKTRFEGLC LLSLLVGESP TELFQQHCVS WLRSIQQVLQ TQDPPATMEL ENSTTRP00000007209/1-1249 SIKTRFEGLC LLSLLVEESP TEMFQQHCVS WLRSIQQVLQ SQDPPPTMEL bmy_08657T0/1-1155 SIKTRFEGLC LLSLLVGESP TEMFQQHCVS WLRSIQQVLQ SQDPPPTMEL BACU001277/1-1151 SIKTRFEGLC LLSLLVGESP TEMFQQHCVS WLRSIQQVLQ SQDPPPTMEL 201 250 ENSBTAP00000028337/1-1167 AVTVLKDLLR YAAQLPAVFR DISMNHLPGL LTSLLGLRPE CELSALEGMK ENSP00000461625/1-1130 AVAVLRDLLR YAAQLPALFR DISMNHLPGL LTSLLGLRPE CEQSALEGMK ENSTTRP00000007209/1-1249 AVAVLGDLLR YAAQLPTLFR DISMNHLPGL LTSLLGLRPE SELSALEGMK bmy_08657T0/1-1155 AVAVLRDLLR YAAQLPTLFR DISMNHLPGL LTSLLGLRPE SELSALEGMK BACU001277/1-1151 AVAVLRDLLR YAAQLPTLFR DISMNHLPGL LTSLLGLRPE SELSALEGMK 251 300 ENSBTAP00000028337/1-1167 ACMTHFPRAC GSLKGKLASF FLSRVDALSP QLQQLACECY SRLPSLGAGF ENSP00000461625/1-1130 ACMTYFPRAC GSLKGKLASF FLSRVDALSP QLQQLACECY SRLPSLGAGF ENSTTRP00000007209/1-1249 ACMTXXXXXX XXXXGKLASF FLSRVDALSP QLQQLACECY SRLPSLGAGF bmy_08657T0/1-1155 ACMTYFPRAC GSLKGKLASF FLSRVDALSP QLQQLACECY ARLPSLGAGF BACU001277/1-1151 ACMTYFPRAC GSLKGKLASF FLSRVDALSP QLQQLACECY SRLPSLGAGF 301 350 ENSBTAP00000028337/1-1167 SQGLKHTDSW EQELRSLLAS LHSLLGGLYE GAEAAPMQYE SPGAETLLSS ENSP00000461625/1-1130 SQGLKHTESW EQELHSLLAS LHTLLGALYE GAETAPVQNE GPGVEMLLS- ENSTTRP00000007209/1-1249 SQGLKHTDSW EQELHSLLTS LHSLLGALYA GADTAPMQYE GPGVETLLSP bmy_08657T0/1-1155 SQGLKHTDSW EHELHSLLAS LHGLLGALYE GAETVPVQYE GPGVETLLSP BACU001277/1-1151 SQGLKHTDSW EHELHSLLAS LHSLLGALYE GAETAPVQYE GPGVETLLSP 351 400 ENSBTAP00000028337/1-1167 SEDADAHTLL RLRQRFSGLA RCLGLML--- ---------- ---------- ENSP00000461625/1-1130 SEDGDAHVLL QLRQRFSGLA RCLGLML--- ---------- ---------- ENSTTRP00000007209/1-1249 SEDGDAHVLL RLWQRFSGLA RCLGLML--- ---------- ---------- bmy_08657T0/1-1155 SEDGDAHVLL RLWQRFSGLA RCLGLMLRCV SVGGSEGLEQ EGLRWVSSSS BACU001277/1-1151 SEDGDAHVLL RLWQRFSGLA RCLGLML--- ---------- ---------- 401 450 ENSBTAP00000028337/1-1167 ---------- ---------- ------SSEF GAPVSVPVQD ILDLICRTLS ENSP00000461625/1-1130 ---------- ---------- ------SSEF GAPVSVPVQE ILDFICRTLS ENSTTRP00000007209/1-1249 ---------- ---------- ------SSEF GAPVSVPVQE ILDLICRTLS bmy_08657T0/1-1155 RGGRLRVGVE SPWGPRAEDL PALTLFSSEF GAPVSVPVQE ILDLICRTLS BACU001277/1-1151 ---------- ---------- ------SSEF GAPVSVPVQD ILDLICRTLS 451 500 ENSBTAP00000028337/1-1167 VSAKNV---- ---------- ---------- ---------- ---------- ENSP00000461625/1-1130 VSSKNI---- ---------- ---------- ---------- ---------- ENSTTRP00000007209/1-1249 VSAKNIVSGV CALFTALAQD AGQPGKQCGV APEVMSGCPG QLLTSQMPLP bmy_08657T0/1-1155 VSAKNI---- ---------- ---------- ---------- ---------- BACU001277/1-1151 VSAKNI---- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000028337/1-1167 ---------- ---------- ---------- ---------- ---------- ENSP00000461625/1-1130 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007209/1-1249 VPGTRTQCRS VADASSGEGE GGAASLPRGS AVPLILLAGS AEEDGSILLG bmy_08657T0/1-1155 ---------- ---------- ---------- ---------- ---------- BACU001277/1-1151 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000028337/1-1167 ---------- ---------- ---------- ---------S LLGDGPLRLL ENSP00000461625/1-1130 ---------- ---------- ---------- ---------S LHGDGPLRLL ENSTTRP00000007209/1-1249 ELGSGGFLTC VHTCIQSYPA SISLSFSLSS PTPLCFFLQS LLGDGPLRLL bmy_08657T0/1-1155 ---------- ---------- ---------- ---------S LLGDGPLRLL BACU001277/1-1151 ---------- ---------- ---------- ---------S LLGDGPLRLL 601 650 ENSBTAP00000028337/1-1167 LLPSLHLEAL DLLSALILAC GARLLRFGAL ISRLLPQVLN AWSIGRENLG ENSP00000461625/1-1130 LLPSIHLEAL DLLSALILAC GSRLLRFGIL IGRLLPQVLN SWSIGRDSLS ENSTTRP00000007209/1-1249 LLPSLHLEAL DLLSALILAC RGRLLRFGAL ISRLLPQVLN AWSIGRDSLS bmy_08657T0/1-1155 LLPSLHLEAL DLLSALILAC GGRLLRFGAL ISRLLPQVLN AWSIGRDSLS BACU001277/1-1151 LLPSLHLEAL DLLSALVLAC GGRLLRFGAL ISRLLPQVLN AWSIGRDSLS 651 700 ENSBTAP00000028337/1-1167 PGQERPYSTV RTKVYAVLEL WVQVCGASAG VLQGGASGEA LLSHLLSDIS ENSP00000461625/1-1130 PGQERPYSTV RTKVYAILEL WVQVCGASAG MLQGGASGEA LLTHLLSDIS ENSTTRP00000007209/1-1249 PGQERPYSTM RTKVYTVLEL WVQVCGASAG VLQGGASGEA LLTHLLSDIS bmy_08657T0/1-1155 PGQERPYSTM RTKVYAVLEL WVQVCGASAG VLQGGASGEA LLTHLLSDIS BACU001277/1-1151 PGQERPYSTM RTKVYAVLEL WVQVCGASAG VLQGGASGEA LLTHLLSDIS 701 750 ENSBTAP00000028337/1-1167 PPADALRLRS PRGSPDAGLQ TGKPSAPKKL KLDVGEAIAP PSHRKGDSNA ENSP00000461625/1-1130 PPADALKLRS PRGSPDGSLQ TGKPSAPKKL KLDVGEAMAP PSHRKGDSNA ENSTTRP00000007209/1-1249 PPADALKLRS PRGSPDGGLQ TGKPSAPKKL KLDMGEALAP PSHRKGDSNA bmy_08657T0/1-1155 PPADALKLRS PRGSPDGGLQ TGKPSAPKKL KLDMGEAMAP PSHRKGDSNA BACU001277/1-1151 PPADALKLRS PRGSPDGGLQ TGKPSAPKKL KLDMGEAMAP PSHRKGDSNA 751 800 ENSBTAP00000028337/1-1167 NSDVCAAALR GLSRTILMCG PLIKEETHRR LHELVLPLVM GVQQGEALGS ENSP00000461625/1-1130 NSDVCAAALR GLSRTILMCG PLIKEETHRR LHDLVLPLVM GVQQGEVLGS ENSTTRP00000007209/1-1249 NSDVCAAALR GLSRTVLMCG PLIKEETHRR LHDLVLPLVM GVQQGEVLGS bmy_08657T0/1-1155 NSD------- ---------- ---------R LHDLVLPLVM GVQQGEVLGS BACU001277/1-1151 NSDVCAAALR GLSRTILMCG PLIKEETHRR LHDLVLPLVM GVQQGEVLGN 801 850 ENSBTAP00000028337/1-1167 SPYTSSHCRR ELYHLLLALL LAPSPRCPPP LACALRAFSL GQREDSLEVS ENSP00000461625/1-1130 SPYTSSRCRR ELYCLLLALL LAPSPRCPPP LACALQAFSL GQREDSLEVS ENSTTRP00000007209/1-1249 SPYTSSRCRR ELYRLLLALL LAPSPRCPPP LACALQAFSL GQREDSLEVS bmy_08657T0/1-1155 SPYTSSRCRR ELYRLLLALL LAPSPRCPPP LACALQAFSL GQREDSLEVS BACU001277/1-1151 SPYTSSRCRR ELYRLLLALL LAPSPRCPPP LACALQAFSL GQREDSLEVS 851 900 ENSBTAP00000028337/1-1167 SFCSEALVTC AALTHPRVPP LQSVGPTCPA PAPVPPPEAP APFRAPAFHA ENSP00000461625/1-1130 SFCSEALVTC AALTHPRVPP LQPMGPTCPT PAPVPPPEAP SPFRAPPFHP ENSTTRP00000007209/1-1249 AFCSEALVTC AALTHPRVPP LQTMGPACPT PAPVPPPEAP SPFRAPAFHP bmy_08657T0/1-1155 AFCSEALVTC AALTHPRVPP LQTMGPACPT PAPVPPPEAP SPFRAPAFHP BACU001277/1-1151 TFCSEALVTC AALTHPRVPP LQTMGPACPT PAPVPPPEAP SPLRAPAFHP 901 950 ENSBTAP00000028337/1-1167 PSPLPSAGPM PSAG------ ---------- --PMPPVGPL PPTRPGPPAT ENSP00000461625/1-1130 PGPMPSVGSM PSAGPMPSAG ---------- --PMPSAGPV PSARPGPPTT ENSTTRP00000007209/1-1249 PGPMPSVGPM PSAGPMPSAG ---------- --PMPSVGPM PPARPGPPAT bmy_08657T0/1-1155 PGPMPSVGPM PSVGPMPSAG PMPSPGPVPP AGPMPSVGPM PPARPGPPAT BACU001277/1-1151 PGPVPSVGPV PSVGPMPSAG PMPSPGPVPP AGPMPSVGPM PPTRPGPPAT 951 1000 ENSBTAP00000028337/1-1167 ANHLGLSVPG LVSVPPRLLP GPENHRAGSS EDPVLAPSGS PPPTIPPDET ENSP00000461625/1-1130 ANHLGLSVPG LVSVPPRLLP GPENHRAGSN EDPILAPSGT PPPTIPPDET ENSTTRP00000007209/1-1249 ANHLGLSVPG LVSVSPRLLP GPENHRAGSN EDAVLAPSGT PPPTIPPDET bmy_08657T0/1-1155 ANHLGLSVPG LVSVSPRLLP GPENHRAGSN EDAVLAPSGT PPPTIPPDET BACU001277/1-1151 ANHLGLSVPG LVSVSPRLLP GPENHRAGSN EDAVLAPSGT PPPTIPPDET 1001 1050 ENSBTAP00000028337/1-1167 FGGRVPRPAF VHYDKEEPSD VEISLESDSD DSVVIVPEGL PP-PPPPS-- ENSP00000461625/1-1130 FGGRVPRPAF VHYDKEEASD VEISLESDSD DSVVIVPEGL PPLPPPPP-- ENSTTRP00000007209/1-1249 FGGRVPRPAF VHYDKEEASD VEISLESDSD DSVVIVPEGL PPLPPPPP-- bmy_08657T0/1-1155 FGGRVPRPAF VHYDKEEASD VEISLESDSD DSVVIVPEGL PPLPPPPP-- BACU001277/1-1151 FGGRVPRPAF VHYDKEEASD VEISLESDSD DSVVIVPEGL PPLPPPPPXX 1051 1100 ENSBTAP00000028337/1-1167 ---------- -------SGT TPPPVAPAGP PAASPPVPAK DEPEELPAAP ENSP00000461625/1-1130 ---------- -------SGA TPPPIAPTGP PTASPPVPAK EEPEELPAAP ENSTTRP00000007209/1-1249 ---------- -------SGT TPPPAAPVGP PTASPPVPAK EEPEELPAAP bmy_08657T0/1-1155 ---------- -------SGT TPPPAAPVGP PTASPPVPAK EEPEELPAAP BACU001277/1-1151 XXXXXXXXXX XXXXXXXXXX XXXXXXXAGP PTASPPVPAK EEPEELPAAP 1101 1150 ENSBTAP00000028337/1-1167 GPLPPPPPP- -PVPGPVTLP PPQLVPEGTP GGGGPPALEE DMTVININSS ENSP00000461625/1-1130 GPLPPPPPPP PPVPGPVTLP PPQLVPEGTP GGGGPPALEE DLTVININSS ENSTTRP00000007209/1-1249 GPLPPPPPP- -PVPGPVALP PPQLVPEGTP SGGGPPALEE DLTVININSS bmy_08657T0/1-1155 GPLPPPPPP- -PVLGPVALP PPQLVPEGTP SGGGPPALEE DLTVININSS BACU001277/1-1151 GPLPPPPPP- -PVPGPVALP PPQLVPEGTP SGGGPPALEE DLTVININSS 1151 1200 ENSBTAP00000028337/1-1167 D-EEEEEEEE EEEEDEEEDE EEDFEEDEEE EEEYFEEEEE EEEEFEEEFE ENSP00000461625/1-1130 DEEEEEEEEE EEEEEEEEEE EEDFEEEEED EEEYFEEEEE EEEEFEEEFE ENSTTRP00000007209/1-1249 E---EEDDDE EDEDEEDFEE ----EEEEEE EEEYFEEEEE EEEEFEEEFE bmy_08657T0/1-1155 D---EEEEEE EEEEEEEEEE EDDFEEEEED EEEYFEEEEE EEEEFEEEFE BACU001277/1-1151 D---EEEEEE EEEEEEEEEE EEDFEEEEED EEEYFEEEEE EEEEFEEEFE 1201 1250 ENSBTAP00000028337/1-1167 EEEGELEDEE DEEEDE---E LEELEEVEFG PAGGEVEGGG PAPPSLPPAL ENSP00000461625/1-1130 EEEGELEEEE EEEDEEEEEE LEEVEDLEFG TAGGEVEEGA PPPPTLPPAL ENSTTRP00000007209/1-1249 EEEGELEEEE EDEDEE---- -EEVEEVEFG PAGGEVEEGG PAPPSLPPAL bmy_08657T0/1-1155 EEEGELEEEE EDEDEE---- -EEVEEVEFG PAGGEVEEGG PAPPSLPPAL BACU001277/1-1151 EEEGELEEEE EDEDEE---- -EEVEEVEFG PAGGEGEEGG PAPPSLPPAL 1251 1300 ENSBTAP00000028337/1-1167 PPAES-PKGP PEPGLEPGLL LEVEEPGTEE APGPETAPML APEVLPSQGE ENSP00000461625/1-1130 PPPESPPKVQ PEPEPEPGLL LEVEEPGTEE ERGADTAPTL APEALPSQGE ENSTTRP00000007209/1-1249 PPAAS-PKVQ PQPEPEPGLL LEVEEPGAEE GPGAETAPTL APEVLPSQGE bmy_08657T0/1-1155 PPAAS-PKVQ PQPEPEPGLL LEVEEPGAEE GPGAETAPTL APEVLPSQGE BACU001277/1-1151 PPAAS-PKVQ PQPEPEPGLL LEVEEPGAEE GPGAETAPTL APEVLPSQGE 1301 1350 ENSBTAP00000028337/1-1167 VEREGGSPPA GPPPQELVEE EPSGPPALLE EGAEGGGDKV SPPPEASAVE ENSP00000461625/1-1130 VEREGESPAA GPPPQELVEE EPSAPPTLLE EETEDGSDKV QPPPETPAEE ENSTTRP00000007209/1-1249 VEREGGSPPA VPSPQELVEE EPSVPPTLLE EGAEGGGDKV PTPPEASAAE bmy_08657T0/1-1155 VEREGGSPPA VPPPQELVEE EPSVPPTLLE EGAEGGGDKV PPPPEASAAE BACU001277/1-1151 VEREGGSPPA VPPPQELVEE EPSVPPTLLE EGAEGGGDKV PPPPEASAAE 1351 1400 ENSBTAP00000028337/1-1167 ETEVEAAALP PEKKEQGDTA AMLADFIDCP PDDEKPPPAS EPDS ENSP00000461625/1-1130 EMETETEAEA LQEKEQDDTA AMLADFIDCP PDDEKPPPPT EPDS ENSTTRP00000007209/1-1249 EMETEAEAAA LQEKEQDDTA AMLADFIDCP PDDEKPPPAT EPDS bmy_08657T0/1-1155 EMETEVEAAA LQEKEQDDTA AMLADFIDCP PDDEKPPPAT EPDS BACU001277/1-1151 EMETEVEAAA LQEKEQDDTA AMLADFIDCP PDDEKPPPAT EPDA