KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:48 2014 Check: 00 .. Name: ENSTTRP00000002917/1-432 Len: 480 Check: 897 Weight: 1.00 Name: ENSP00000398930/1-462 Len: 480 Check: 4615 Weight: 1.00 Name: ENSBTAP00000028355/1-437 Len: 480 Check: 5967 Weight: 1.00 Name: bmy_06976T0/1-326 Len: 480 Check: 4234 Weight: 1.00 Name: BACU016841/1-453 Len: 480 Check: 1653 Weight: 1.00 // 1 50 ENSTTRP00000002917/1-432 -------MQL PWWWE----- -----LGDPC AWTGQCRGTR RMS-PATTGT ENSP00000398930/1-462 -------MQL PRWWE----- -----LGDPC AWTGQGRGTR RMS-PATTGT ENSBTAP00000028355/1-437 -------MQL PWWWE----- -----LGDPC AWTGQGRGTR RMS-PATTGT bmy_06976T0/1-326 ---------- ---------- ---------- ---------- -----MTAGK BACU016841/1-453 MFKQQLEHQL TWEQENALLL SCADGINGTV NWKTKQANSF IISRKMTAGK 51 100 ENSTTRP00000002917/1-432 FLLTVYTIFS KVHSDRNVYP SAGVLFVHVL EREYFKGEFP PYPKPGEISN ENSP00000398930/1-462 FLLTVYSIFS KVHSDRNVYP SAGVLFVHVL EREYFKGEFP PYPKPGEISN ENSBTAP00000028355/1-437 FLLTVYTIFS KVHSDRNVYP SAGVLFVHVL EREYFKGEFP PYPKPGEISN bmy_06976T0/1-326 --KDVYTIFS KVHSDRNVYP SAGVLFVHVL EREYFKGEFP PYPKPGEISN BACU016841/1-453 --KDVYTIFS KVHSDRNVYP SAGVLFVHVL EREYFKGEFP PYPKPGEISN 101 150 ENSTTRP00000002917/1-432 DPITFNTNLM GYPDRPGWLR YIQRTPYSDG VLYGSPTAEN VGKPTVIEIT ENSP00000398930/1-462 DPITFNTNLM GYPDRPGWLR YIQRTPYSDG VLYGSPTAEN VGKPTIIEIT ENSBTAP00000028355/1-437 DPITFNTNLM GYPDRPGWLR YIQRTPYSDG VLYGSPTAEN VGKPTVIEIT bmy_06976T0/1-326 DPITFNTNLM GYPDRPGWLR YIQRTPYSDG VLYGSPTAEN VGKPTVIEIT BACU016841/1-453 DPITFNTNLM GYPDRPGWLR YIQRTPYSDG VLYGSPTAEN VGKPTVIEIT 151 200 ENSTTRP00000002917/1-432 AYNRRTFETA RHNLIINIMS AEXXXXXXXX XXXXXXXXXX XXXASEVLGD ENSP00000398930/1-462 AYNRRTFETA RHNLIINIMS AEDFPLPYQA EFFIKNMNVE EMLASEVLGD ENSBTAP00000028355/1-437 AYNRRTFETA RHNLIINIMS AEDFPLPYQA EFFIKNMNVE EMLASEVLGD bmy_06976T0/1-326 AYNRRTFETA RHNLIINIMS AEDFPLPYQA EFFIKNMNVE EMLASEVLGD BACU016841/1-453 AYNRRTFETA RHNLIINIMS AEDFPLPYQA EFFIKNMNVE EMLASEVLGD 201 250 ENSTTRP00000002917/1-432 FLGAVKNVWQ PERLNAINIT SALDRGGRVP LPINDMKEGV YVMVGADVPF ENSP00000398930/1-462 FLGAVKNVWQ PERLNAINIT SALDRGGRVP LPINDLKEGV YVMVGADVPF ENSBTAP00000028355/1-437 FLGAVKNVWQ PERLNAINIT SALDRGGRVP LPINDMKEGV YVMVGADVPF bmy_06976T0/1-326 FLGAVKNVWQ PERLNAINIT SALDRGGRVP LPINDMKEGV YVMVGADVPF BACU016841/1-453 FLGAVKNVWQ PERLNAINIT SALDRGGRVP LPINDMKEGV YVMVGADVPF 251 300 ENSTTRP00000002917/1-432 SSCLREVENP QNQLRCSQEM EPVITCDKKF RTQFYIDWCK ISLVDKTKQV ENSP00000398930/1-462 SSCLREVENP QNQLRCSQEM EPVITCDKKF RTQFYIDWCK ISLVDKTKQV ENSBTAP00000028355/1-437 SSCLREVENP QNQLRCSQEM EPVITCDKKF RTQFYIDWCK ISLVDRTKQV bmy_06976T0/1-326 SSCLREVENP QNQLRCSQEM EPVITCDKKF RTQFHIDWCK ISLVDKTKQV BACU016841/1-453 SSCLREVENP QNQLRCSQEM EPVITCDKKF RTQFHIDWCK ISLVDKTKQV 301 350 ENSTTRP00000002917/1-432 STYHEVIRGE GILPDGGEYK PPSDSLKSRD YYTDFLITLA VPSAVALVLF ENSP00000398930/1-462 STYQEVIRGE GILPDGGEYK PPSDSLKSRD YYTDFLITLA VPSAVALVLF ENSBTAP00000028355/1-437 STYQEVIRGE GILPDGGEYK PPSDSLKSRD YYTDFLVTLA VPSAVALVLF bmy_06976T0/1-326 STYQEVIRGE GILPDGGEYK PPSDSLKSRD YYTDFLITLA VPSAVALVLF BACU016841/1-453 STYQEVIRGE GILPDGGEYK PPSDSLKSRD YYTDFLITLA VPSAVALVLF 351 400 ENSTTRP00000002917/1-432 LILAYIMCCR REGVLICDFK YMCIQLVHHS AIQKSTKELR DMSKNREIAW ENSP00000398930/1-462 LILAYIMCCR REGVEKRNMQ TPDIQLVHHS AIQKSTKELR DMSKNREIAW ENSBTAP00000028355/1-437 LILAYIMCCR REGVEKRNMQ TPDIQLVHHS AIQKSTKELR DMSKNREIAW bmy_06976T0/1-326 LILAYIMCCR REGVEKRNMQ TPE------- ---------- ---------- BACU016841/1-453 LILAYIMCCR REGVEKRNMQ TPDIQLVHHS AIQKSTKELR DMSKNREIAW 401 450 ENSTTRP00000002917/1-432 PLSTLPVFHP VTGEIVPPLH ADNYESTNMP LMQTQQ---- ---------- ENSP00000398930/1-462 PLSTLPVFHP VTGEIIPPLH TDNYDSTNMP LMQTQQWSFA PVAQAGVQWS ENSBTAP00000028355/1-437 PLSTLPVFHP VTGEIIPPLH TDNYESTNMP LMQTQQ---- ---------- bmy_06976T0/1-326 ---------- ---------- ---------- ---------- ---------- BACU016841/1-453 PLSTLPVFHP VTGEIIPPLH ADSYESTNMP LMQTQQ---- ---------- 451 500 ENSTTRP00000002917/1-432 ---------- -NLPHQTQIP QQQTT----- ENSP00000398930/1-462 DLGSLQPPPP RNLPHQTQIP QQQTTGKWYP ENSBTAP00000028355/1-437 ---------- -NLPHQTQIP QQQTTGKWYS bmy_06976T0/1-326 ---------- ---------- ---------- BACU016841/1-453 ---------- -NLPHQTQIP QQQTTGEYEK