KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:49 2014 Check: 00 .. Name: ENSP00000261187/1-478 Len: 489 Check: 755 Weight: 1.00 Name: ENSBTAP00000028361/1-482 Len: 489 Check: 1001 Weight: 1.00 Name: ENSTTRP00000011697/1-477 Len: 489 Check: 7997 Weight: 1.00 Name: bmy_10108T0/1-419 Len: 489 Check: 8609 Weight: 1.00 Name: BACU019517/1-442 Len: 489 Check: 55 Weight: 1.00 // 1 50 ENSP00000261187/1-478 MPPMPSAPPV HPPPDGGWGW IVVGAAFISI GFSYAFPKAV TVFFKEIQQI ENSBTAP00000028361/1-482 MPPPGGTPPP HPPPDGGWGW VVVGAAFISI GFSYAFPKAV TVFFKEIQLL ENSTTRP00000011697/1-477 MPPPAGSPPP HPPPDGGWGW VVVGAAFISI GFSYAFPKAV TVFFKEIQLI bmy_10108T0/1-419 ---------- ---------- ---------- ---------- ---------- BACU019517/1-442 --PPAVSPPL HPPPDGGWGW VVVGAAFISI GFSYAFPKAV TVFFKEIQLI 51 100 ENSP00000261187/1-478 FHTTYSEIAW ISSIMLAVMY AGGPVSSVLV NKYGSRPVVI AGGLLCCLGM ENSBTAP00000028361/1-482 FNTTYSEIAW ISSTMLAVMY AGGPISSVLV NKYGSRPVVM VGGLLCCLGM ENSTTRP00000011697/1-477 FNTTYSEIAW ISSTMLAVMY AGGPISSVLV NKYGSRPVVM VGGLLCCLGM bmy_10108T0/1-419 ---------- ---------M SDGPISSVLV NKYGSRPVVM VGGLLCCLGM BACU019517/1-442 FNATYSEIAW ISSTMLAVMY AGGPVSSVLV NKYGSRPVVM VGGLLCCLGM 101 150 ENSP00000261187/1-478 VLASFSSSVV QLYLTMGFIT GLGLAFNLQP ALTIIGKYFY RKRPMANGLA ENSBTAP00000028361/1-482 VSASYSTNVV ELYFTMGLIC GLGLAFNLQP ALTIIGKYFY KKRPVANGLA ENSTTRP00000011697/1-477 VTASFSTSVI ELYITMGFIC GLGLAFNLQP ALTILGKYFY KKRPMASGLA bmy_10108T0/1-419 VTASFSTSVV ELYITMGFIC GLGLAFNLQP ALTILGKYFY KKRPMASGLA BACU019517/1-442 VTASFSTSVV ELYITMGFIC GLGLAFNLQP ALTILGKYFY KKRPMASGLA 151 200 ENSP00000261187/1-478 MAGSPVFLSS LAPFNQYLFN TFGWKGSFLI LGSLLLNACV AGSLMRPLGP ENSBTAP00000028361/1-482 MAGSPVFLST LAPFNQYLFN TYGWKGSFMI LGGLLLNCCV AGSLMRPVEP ENSTTRP00000011697/1-477 MAGSPVFLST LAPFNQYLFN TYGWKGSFLI LGGLLLNSCV AGSLMRPVGP bmy_10108T0/1-419 MAGSPVFLST LAPFNQYLFN TYGWKGSFLI LGGLLLNCCV AGSLMRPVGP BACU019517/1-442 MAGSPVFLST LAPFNQYLFN TYGWKGSFLI LGGLLLNSCV AGSLMRPVGP 201 250 ENSP00000261187/1-478 NQTTSKSKNK TGKTEDDSSP KKIKTKKSTW EKVNKYLDFS LFKHRGFLIY ENSBTAP00000028361/1-482 KAST-ESKNK VGVRETDCSM KKRQKKLSVW EEINKYLDFS LFKHRGFLIY ENSTTRP00000011697/1-477 KLTTKKSKQK AGEKVTDPGM KKRHRKKSIC AKIDKYLDFS LFKHRGFLIY bmy_10108T0/1-419 KLTTKKSKNK VGIRATNPGM KKRHKKKSIW AKIDKYLDFS LFKHRGFLIY BACU019517/1-442 KLTTKKSKNK VGVRATDPGM KKKHKKKSIW AKIDKYLDFS LFKHRGFLIY 251 300 ENSP00000261187/1-478 LSGNVIMFLG FFAPIIFLAP YAKDQGIDEY SAAFLLSVMA FVDMFARPSV ENSBTAP00000028361/1-482 LSGNVIMFLG FFAPVIFLAP YAKDKGIDEY SAAFLLSVMA FVDMFARPTV ENSTTRP00000011697/1-477 LSGNVIMFLG FFAPIIFLAP YAKDKGIDEY SAAFLLSVMA FVDMFARPTV bmy_10108T0/1-419 LSGNVIMFLG FFAPIIFLAP YAKDKGIDEY SAAFLLSVMA FVDMFARPTV BACU019517/1-442 LSGNVIMFLG FFAPIIFLAP YAKDKGIDEY SAAFLLSVMA FVDMFARPTV 301 350 ENSP00000261187/1-478 GLIANSKYIR PRIQYFFSFA IMFNGVCHLL CPLAQDYTSL VLYAVFFGLG ENSBTAP00000028361/1-482 GLIANSKLIR PRIQYFFSFA VMFTGICHLL CALAEDYTSL VVYAVFFGLG ENSTTRP00000011697/1-477 GFIANSKLIR PRIQYFFSFA ILFNGVCHLL CPLAEDYTSL VVYAVFFGLG bmy_10108T0/1-419 GFIANSKLIR PRIQYFFSFA ILFNGLCHLL CPLAEDYPSL VVYAVFFGLG BACU019517/1-442 GFIANSKLIR PRIQYFFSFA VLFNGLCHLL CPLAEDYPSL VVYAVFFGLG 351 400 ENSP00000261187/1-478 FGSVSSVLFE TLMDLVGAPR FSSAVGLVTI VECGPVLLGP PLAGKLVDLT ENSBTAP00000028361/1-482 FGSVSSVLFE TLMDLVGAQR FSSAVGLVTV VECCPVLLGP PLAGKLVDET ENSTTRP00000011697/1-477 FGSVSSILFE SLMDLVGAQR FSSAVGLVTV VECCPVLLGP PLAGKLVDET bmy_10108T0/1-419 FGSVSSILFE SLMDLVGAQR FSSAVGLVTV VECCPVLLGP PLAGKLVDET BACU019517/1-442 FGSVSSILFE SLMDLVGAQR FSSAVGLVTV VECCPVLLGP PLAGKLVDET 401 450 ENSP00000261187/1-478 GEYKYMYMSC GAIVVAASVW LLIGNAINYR LLAKERK--- --EENARQKT ENSBTAP00000028361/1-482 GQYKYMYLAC GAIVVLASVW LLIGNAANYR LLAREKK--- --KSIHTKES ENSTTRP00000011697/1-477 GQYKYMYVAC GAIVVLASVW LLIGNAINYR LLAKEKN--- --EENTTPES bmy_10108T0/1-419 GQYKYMYVAC GAIVVLASVW LLIGNAINYR LLAKEKKLKE TTKKIHTPES BACU019517/1-442 GQYKYMYVAC GAIVVLASVW LLIGNAINYR LLAKEKK--- --LKETTKK- 451 500 ENSP00000261187/1-478 RESEPLSKSK HSEDVNVKVS NAQSVT---- --SERETNI ENSBTAP00000028361/1-482 QETEPLKTSQ -SPSVNIKSG KNEEWKGAEV NSSERETNI ENSTTRP00000011697/1-477 QESESLKPSK -SPDVSVKSQ TAQGLT---- --SERETNI bmy_10108T0/1-419 RESESLKTSK -SHDVIVKSI KSQKSKGSGV NPSERETNI BACU019517/1-442 ---------- ---------- ---------- ---------