KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:50 2014 Check: 00 .. Name: bmy_11961T0/1-1139 Len: 1154 Check: 3031 Weight: 1.00 Name: ENSP00000321627/1-763 Len: 1154 Check: 8710 Weight: 1.00 Name: ENSBTAP00000028370/1-763 Len: 1154 Check: 9479 Weight: 1.00 Name: BACU018882/1-742 Len: 1154 Check: 1200 Weight: 1.00 Name: ENSTTRP00000004104/1-763 Len: 1154 Check: 1122 Weight: 1.00 // 1 50 bmy_11961T0/1-1139 ---MATAKAL YLSKWPKPRE QLDLQEDDFI ELFAVQHKEL TNEDLMELEA ENSP00000321627/1-763 MEASLTRRLL FKDRHFTCSK IIGRRFACFA QRLSHRRKQS QCDLLNESTG ENSBTAP00000028370/1-763 RERNPERNFP FQEKDCSCAT RIGRRFACFA QRLSHRRKQS QCDLLNESTG BACU018882/1-742 ---------- ---------- -IGRRFACFA QRLSHRRKQS QCDLLNESTG ENSTTRP00000004104/1-763 MESSLTRXXX XXXXXXXXXX XIGRRFACFA QRLSHRRKQS QCDLLNESTG 51 100 bmy_11961T0/1-1139 QRKDK-ERQE EEEITEEPKR FMMQEMARGF SLFKKALHLY SSLPSNSLKL ENSP00000321627/1-763 QLPTTCSSAA SNSINWNCRV KMTQQM---- ---------- -----QNLHL ENSBTAP00000028370/1-763 QLPATCSSAA SNNLNWNCRV KMTQQM---- ---------- -----QNLHL BACU018882/1-742 QLPTTCSSAA SDNLNRNCRV KMTQQM---- ---------- -----QTLHL ENSTTRP00000004104/1-763 QLPTTCSSAA SDNLNWNCRV KMTQQM---- ---------- -----QNLHL 101 150 bmy_11961T0/1-1139 YLSKKNSAPS SPSAAKRLYR NLSEKLKGSH SSFDEAYFRT RTDRLSLRKT ENSP00000321627/1-763 CQSKKHSAPS SPNAAKRLYR NLSEKLKGSH SSFDEAYFRT RTDRLSLRKT ENSBTAP00000028370/1-763 SQSKKHSTPS SPNAAKRLYR NLSEKLKGSH SSFDEAYFRT RTDRLSLRKT BACU018882/1-742 SQSKKNSAPS SPSAAKRLYR NLSEKLKGSH SSFDEAYFRT RTDRLSLRKT ENSTTRP00000004104/1-763 SQSKKHSAPS SPSAAKRLYR NLSEKLKGSH SSFDEASFRT RTDRLSLRKT 151 200 bmy_11961T0/1-1139 SVNFQGNEAM FEAVEQQDMD AVQILLYQYT SEELDLNTPN SEGLTPLDIA ENSP00000321627/1-763 SVNFQGNEAM FEAVEQQDMD AVQILLYQYT PEELDLNTPN SEGLTPLDIA ENSBTAP00000028370/1-763 SVNFQGNEAM FEAVEQQDMD AVQILLYQYT PEELDLNTPN SEGLTPLDIA BACU018882/1-742 SVNFQGNEAM FEAVEQQDMD AVQILLYQYT SEELDLNTPN SEGLTPLDIA ENSTTRP00000004104/1-763 SVNFQGNEAM FEAVEQQDMD AVQILLYQYT SEELDLNTPN SEGLTPLDIA 201 250 bmy_11961T0/1-1139 IMTNNVPIAR ILLRTGAQES PH-CKQHKRK CPFAPL--EL GRPGQEVPFY ENSP00000321627/1-763 IMTNNVPIAR ILLRTGARES PHFVSLESRA MHLNTLVQEA QERVSELSAQ ENSBTAP00000028370/1-763 IMTNNVPIAR ILLKTGARES PHFVSLESRS IHLNTLVQEA QERVSELSAQ BACU018882/1-742 IMTNNVPIAR ILLRTGAQES PHFVSLESRA MHLNTLVQEA QERVSELSTQ ENSTTRP00000004104/1-763 IMTNNVPIAR ILLRTGAQES PHFVSLESRA MHLNTLVQEA QERVSELSAQ 251 300 bmy_11961T0/1-1139 VNGSGFLKSN N--------Y NLNYIIWTSC QPGKPSNAPQ HTGAGSPGEG ENSP00000321627/1-763 VENEGFTLDN TEKEKQLKAW EWRYRLY--- ---------R RMKTGFEHAR ENSBTAP00000028370/1-763 VENEGFSLDN TEKEKQLKAW EWRYRLY--- ---------R RMKTGFEHAR BACU018882/1-742 VENEKFSLDN TEKEKQLKAW EWRYRLY--- ---------R RMKTGFEHAR ENSTTRP00000004104/1-763 VENERFSLDN TEKEKQLKAW EWRYRLY--- ---------R RMKTGFEHAR 301 350 bmy_11961T0/1-1139 APEVPTNACL MVTSSTSLTV SFHEPLSVNA AVVTRYKEKV NEWYDFHNTY ENSP00000321627/1-763 APEMPTNVCL MVTSSTSLTV SFQEPLSVNA AVVTRYK--- ---------- ENSBTAP00000028370/1-763 APEAPTSACL MVTSSTSLTV SFQEPLSVNA AVVTRYK--- ---------- BACU018882/1-742 APEVPTNACL MVTSSTSLTV SFHEPLSVNA AVVTRYK--- ---------- ENSTTRP00000004104/1-763 APEVPTNACL MVTSSTSLTV SFHEPLSVNA AVVTRYK--- ---------- 351 400 bmy_11961T0/1-1139 LGHHSYMQLT QSTEHLHETH RPSALVQSPA LLSGHRTLSS APPETTTRKP ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_11961T0/1-1139 QYWRQLWPLG KGGRGANQEP LPQVHSVEVK HYEFCRLFTV CGEHQRDQPQ ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_11961T0/1-1139 IPNSPAEKKP NEKAWKTISG RRRKARGAAY ETLKEEVEWS MSKDFCPLAG ENSP00000321627/1-763 ---------- ---------- ---------- ------VEWS MSEDFSPLAG ENSBTAP00000028370/1-763 ---------- ---------- ---------- ------VEWS MSKDFCPLAG BACU018882/1-742 ---------- ---------- ---------- ------VEWS MSKDFCPLAG ENSTTRP00000004104/1-763 ---------- ---------- ---------- ------VEWS MSKDFCPLAG 501 550 bmy_11961T0/1-1139 EIIMENLQTL RCTITGLTMG QQYFVQVSAY NMKGWGPAQT TTPACASPSN ENSP00000321627/1-763 EIIMDNLQTL RCTITGLTMG QQYFVQVSAY NMKGWGPAQT TTPACASPSN ENSBTAP00000028370/1-763 EIIMENLQIL KYTITGLTTG QQYFVQVSAY NMKGWGPAQT TTPACASPSN BACU018882/1-742 EIIMENLQTL RCTITGLTMG QQYFVQVSAY NMKGWGPAQT TTPACASPSN ENSTTRP00000004104/1-763 EIIMENLQTL RCTITGLTMG QQYFVQVSAY NMKGWGPAQT TTPACASPSN 551 600 bmy_11961T0/1-1139 WKDYDDREPR HKGQSEVLEG LLQQVRALHQ HYSCRESSKL QTTGRKQSVS ENSP00000321627/1-763 WKDYDDREPR HKGQSEVLEG LLQQVRALHQ HYSCRESTKL QTTGRKQSVS ENSBTAP00000028370/1-763 WKDYDDRAPR HKGQSEVLEG LLQQVRALHQ HYSCRESSKL QTSGRKQSVS BACU018882/1-742 WKDYDDRAPR HKGQSEVLEG LLQQVRALHQ HYSCRESSKL QTTGRKQSVS ENSTTRP00000004104/1-763 WKDCDDRAPR HKGQSEVLEG LLQQVRALHQ HYSCRESSKL QTTGRKQSVS 601 650 bmy_11961T0/1-1139 RSLKHLFHSS NKFVKTLKRG LYIAVIFYYK DHMLVTNEDQ IPIVEIDDSH ENSP00000321627/1-763 RSLKHLFHSS NKFVKTLKRG LYIAVIFYYK DNILVTNEDQ VPIVEIDDSH ENSBTAP00000028370/1-763 RSLKHLFHSS NKFVKTLKRG LYIAVIFYYK DNMLVTNEDQ IPIVEIDDSH BACU018882/1-742 RSLRHLFHSS NKFVKTLKRG LYIAVIFYYK DNMLVTNEDQ IPIVEIDDSH ENSTTRP00000004104/1-763 RSLKHLFHSS NKFVKTLKRG LYIAVIFYYK DNMLVTNEDQ IPIAEIDDSH 651 700 bmy_11961T0/1-1139 TSSITQDFLW FTKLSCMWED IRWLRQSTPI SMSSSTVLQT RQKMLAATAQ ENSP00000321627/1-763 TSSITQDFLW FTKLSCMWED IRWLRQSIPI SSSSSTVLQT RQKMLAATAQ ENSBTAP00000028370/1-763 TSSITQDFLW FTKLSCMWED IRWLRQSVPI SMSSSTVLQT RQKMLAATAQ BACU018882/1-742 TSSITQDFLW FTKLSCMWED IRWLRQSTPI SMSSSTVLQT RQKMLAATAQ ENSTTRP00000004104/1-763 TSSIAQDFLW FTKLSCMWED IRWLRQSTPI SMSSSTVLQT RQKMLAATAQ 701 750 bmy_11961T0/1-1139 LQNLLGTHNL GRVYYEPIKD RHGNILIVTI REVEMLYSFF NGKWIQISKL ENSP00000321627/1-763 LQNLLGTHNL GRVYYEPIKD RHGNILIVTI REVEMLYSFF NGKWMQISKL ENSBTAP00000028370/1-763 LQNLLGTHNL GRVYYEPIKD RHGNILIVTI REVEMLYSFF SGKWMQISKL BACU018882/1-742 LQNLLGTHNL GRVYYEPIKD RHGNILIVTI REVEMLYSFF NGKWIQISKL ENSTTRP00000004104/1-763 LQNLLGTHNL GRVYYEPIKD RHGNILIVTI REVEMLYSFF NGKWMQISKL 751 800 bmy_11961T0/1-1139 QSQRKSLSTP EEPTALDILL ITIQDILSYH KRSHQRLSPG LYLGYLKLCS ENSP00000321627/1-763 QSQRKSLSTP EEPTALDILL ITIQDILSYH KRSHQRLFPG LYLGYLKLCS ENSBTAP00000028370/1-763 QSQRKSLSTP EEPTALDILL ITIQDILSYH KRSHQRLSPG LYLGYLKLCS BACU018882/1-742 QSQRKSLSTP EEPTALDILL ITIQDILSYH KRSHQRLSPG LYLGYLKLCS ENSTTRP00000004104/1-763 QSQRKSLSTP EEPTALDILL ITIQDILSYH KRSHQRLSPG LYLGYLKLCS 801 850 bmy_11961T0/1-1139 SVDQIKVLVS QKLPNILCHV KIRENNNVSK EEWELVQKLS GSESMESVDH ENSP00000321627/1-763 SVDQIKVLVT QKLPNILCHV KIRENNNISR EEWEWIQKLS GSESMESVDH ENSBTAP00000028370/1-763 SVDQIKVLVT QKLPNILCHV KIRENYNISK EEWEWVQKLS GSESMESVDH BACU018882/1-742 SVDQIKVLVT QKLPNVLCHV KIRENNNVSK EEWELVQKLS GSESMESVDH ENSTTRP00000004104/1-763 SVDQIKVLVT QKLPNILCHV KIRENNNVSK EEWELVQKLS GSESMESVDH 851 900 bmy_11961T0/1-1139 TSDCPMQLFF YELQMAVKAL LKQINIPLHQ ARNFRLYTQE VLEMGHNVSF ENSP00000321627/1-763 TSDCPMQLFF YELQMAVKAL LQQINIPLHQ ARNFRLYTQE VLEMGHNVSF ENSBTAP00000028370/1-763 TSDCPMQLFF YELQMAVKAL LKQINIPLYQ ARNFRLYTQE VLEMGHNVSF BACU018882/1-742 TSDCPMQLFF YELQMAVKAL LKQINIPLHQ ARNFRLYTQE VLEMGHNVSF ENSTTRP00000004104/1-763 TSDCPVQLFF YELQMAVKAL LKQINIPLHQ ARNFRLYTQE VLEMGHNVSF 901 950 bmy_11961T0/1-1139 LLLLPASDDV CTAPGQNNPY TPHSGFLNLP LQMFELGIHC PFSFFLPSFF ENSP00000321627/1-763 LLLLPASDDV CTAPGQNNPY TPHSGFLNLP LQMFELGIVA CFT------- ENSBTAP00000028370/1-763 LLLLPASDDV CTAPGQNNPY TPHSGFLNLP LQMFELGIVA CFT------- BACU018882/1-742 LLLLPASDDV CTAPGQNNPY TPHSGFLNLP LQMFELGIVA CFT------- ENSTTRP00000004104/1-763 LLLLPASDDV CTAPGQNNPY TPHSGFLNLP LQMFELGIVA CFT------- 951 1000 bmy_11961T0/1-1139 LFFPFLFFPS FFLSSLFPPS HPLFPPNGKK NTEIKIVKHN FLPYWFSVVT ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_11961T0/1-1139 ISLVTQLINE GHKKIRSFQS ILPFSVMATK CIIAKPQKTM LKQTVRHFTL ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 1051 1100 bmy_11961T0/1-1139 FTLQPREDIC QVQTGYNSSL KGIKTHSGSY KGQENTALKW CTAGIRIGHW ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 1101 1150 bmy_11961T0/1-1139 SPHSILLYHF NRRKHKQSRL PLHSSEFHPE RKSSKEAGSG KMGIVGYTKS ENSP00000321627/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028370/1-763 ---------- ---------- ---------- ---------- ---------- BACU018882/1-742 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004104/1-763 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_11961T0/1-1139 LNVX ENSP00000321627/1-763 ---- ENSBTAP00000028370/1-763 ---- BACU018882/1-742 ---- ENSTTRP00000004104/1-763 ----