KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:51 2014 Check: 00 .. Name: ENSTTRP00000000195/1-572 Len: 743 Check: 392 Weight: 1.00 Name: ENSP00000300441/1-615 Len: 743 Check: 8528 Weight: 1.00 Name: ENSBTAP00000028385/1-614 Len: 743 Check: 7174 Weight: 1.00 Name: bmy_06715T0/1-648 Len: 743 Check: 9809 Weight: 1.00 Name: BACU006434/1-432 Len: 743 Check: 7554 Weight: 1.00 // 1 50 ENSTTRP00000000195/1-572 ---------- ---------- ---------- ---------- ---SGEMDRT ENSP00000300441/1-615 MAVYVGMLRL GRLCAGSSGV LGARAALSRS WQEARLQGVR FLSSREVDRM ENSBTAP00000028385/1-614 MAVYVGMLRV ARLCARSPRV LGARVGLSRV WQEARLWGVR PLSSGELDHT bmy_06715T0/1-648 ---------- ---------- ---------- ---------- ------MDRT BACU006434/1-432 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000195/1-572 ATLPIGGLSH VQGHSTLHLI NKTVGQCLNA TAQRVPDREA LVVHHENIRL ENSP00000300441/1-615 VSTPIGGLSY VQGCTKKHLN SKTVGQCLET TAQRVPEREA LVVLHEDVRL ENSBTAP00000028385/1-614 VPLPVGGFSY VQGHVGLHLS NKTVGRCLDA TAQRVPDQEA LVVHHENIRL bmy_06715T0/1-648 ATLPVGGLSY VQGHTTLHLI NKTVGQCLDA TAQRVPDREA LVVHHENIRL BACU006434/1-432 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000195/1-572 TFAQLKEEVD KAASGLLSTG LRKGDRLGMW GPNSYAWVLM QLATAQAGII ENSP00000300441/1-615 TFAQLKEEVD KAASGLLSIG LCKGDRLGMW GPNSYAWVLM QLATAQAGII ENSBTAP00000028385/1-614 TFAQLKEEVD KAASGLLSIG LRKGDRLGMW GPNSYAWVLM QLATAQAGII bmy_06715T0/1-648 TFAQLKEEVD KAASGLLSIG LCKGDRLGMW GPNSYAWVLM QLATAQAGII BACU006434/1-432 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000195/1-572 LVSVNPAYQA MEVEYALKKV GCKALVFPRQ FKTQHYYSIL KQICPEVEKA ENSP00000300441/1-615 LVSVNPAYQA MELEYVLKKV GCKALVFPKQ FKTQQYYNVL KQICPEVENA ENSBTAP00000028385/1-614 LVSVNPAYQA MELEYALKKV GCKALVFPKQ FKTQQYYNIL KQICPEVEKA bmy_06715T0/1-648 LVSVNPAYQA MEVEYALKKV GCKALVFPRQ FKTQHYYNIL KQICPEVEKA BACU006434/1-432 ---------- MEVEYALRKV GCKALVFPRQ FKTQHYYNIL KQICPEVEKA 201 250 ENSTTRP00000000195/1-572 QPGHLKSQRL PELTTVISAD APLPGTLLLD EVVAAGSQEQ NLARLRHTQQ ENSP00000300441/1-615 QPGALKSQRL PDLTTVISVD APLPGTLLLD EVVAAGSTRQ HLDQLQYNQQ ENSBTAP00000028385/1-614 QPGALKSQRL PDLTTVISVD AHLPGTLLLD EVVAAGSQE- NLTRLRHTQQ bmy_06715T0/1-648 QPGDLKSQRL PDLTTVISVD APLPGTLLLD EVVAAGSQEQ NLARLRLTQQ BACU006434/1-432 QPGDLKSQRL PDLTTVISVD APLPGTLLLD EVVAAGSQEQ NLARLRLTQQ 251 300 ENSTTRP00000000195/1-572 LLSCHDPINI QFTSGTTGSP KGATLSHYNI VNNSNMIGER LRLHQKPPDK ENSP00000300441/1-615 FLSCHDPINI QFTSGTTGSP KGATLSHYNI VNNSNILGER LKLHEKTPEQ ENSBTAP00000028385/1-614 FLSCHDPINI QFTSGTTGSP KGATLSHYNI VNNANMIGQR LRLHQKTPEE bmy_06715T0/1-648 LLSCHDPINI QFTS------ ---------- ---------- ------PPDK BACU006434/1-432 LLSCHDPINI QFTSGTTGSP KGATLSHYNI VNNSNMIGER LRLHQKPPDK 301 350 ENSTTRP00000000195/1-572 SRVVLPSPLY HCLGSVGGTM VSLMHGVTLI LSSPVFDGKK ALEAISRERG ENSP00000300441/1-615 LRMILPNPLY HCLGSVAGTM MCLMYGATLI LASPIFNGKK ALEAISRERG ENSBTAP00000028385/1-614 SRVVLPSPLY HCLGSVGGTM VSLMHGVTLI LCSPVFEGKK TLEAISRERG bmy_06715T0/1-648 SRVVLPNPLY HCLGSVGGTM VSLMHGVTLI LSSPVFDGKK ALEAISRERG BACU006434/1-432 SRVVLPNPLY HCLGSVGGTM VSLMHGVTLI LSSPVFDGKK ALEAISRERG 351 400 ENSTTRP00000000195/1-572 SLLYGTPTMF VDILNQPDFS SYDISAMCGG VIGGSPASSE LIRAIIHKLN ENSP00000300441/1-615 TFLYGTPTMF VDILNQPDFS SYDISTMCGG VIAGSPAPPE LIRAIINKIN ENSBTAP00000028385/1-614 CFLYGTPTMF VDVLNQPDFS SYDISTMRGG VIAGSPAPPE LIRAIINKLN bmy_06715T0/1-648 SLLYGTPTMF VDILNQPDFS SYDISAMCGG VIGGSPASPE LIRAIINKLN BACU006434/1-432 SLLYGTPTMF VDILNQPDFS SYDISAMCGG VIGGSPASPE LIRAIINKLN 401 450 ENSTTRP00000000195/1-572 MKELV----- ---------- ---------- ---------- ---------- ENSP00000300441/1-615 MKDLV----- ---------- ---------- ---------- ---------- ENSBTAP00000028385/1-614 MKELV----- ---------- ---------- ---------- ---------- bmy_06715T0/1-648 MKELVGPEFT PKRGRRSLNL FVCSSLSLHA NPLLRSAVCP GPSEGGSGDG BACU006434/1-432 MKELV----- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000000195/1-572 ---------- ---------- ---------- -----VVYGA TENSPVTFMN ENSP00000300441/1-615 ---------- ---------- ---------- -----VAYGT TENSPVTFAH ENSBTAP00000028385/1-614 ---------- ---------- ---------- -----VAYGT TENSPVTFMN bmy_06715T0/1-648 QPDASLAAVA GRRRFNGALW RRAPLPAAPA ASPQEVVYGS TENSPVTFMN BACU006434/1-432 ---------- ---------- ---------- -----VVYGS TENSPVTFMN 501 550 ENSTTRP00000000195/1-572 FTEDTVEQKT ESVGRIMPHT EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000300441/1-615 FPEDTVEQKA ESVGRIMPHT EARIMNMEAG TLAKLNTPGE LCIRGYCVML ENSBTAP00000028385/1-614 FTEDTVEQKA ESVGRVMPHT EAQIVNTETG TLTELNTPGE LCIRGYCVML bmy_06715T0/1-648 FTEDAVEQKA GSVGRIMPHT EAQIVNVGTG TLAELNTPGE LCIRGYCVML BACU006434/1-432 FTEDAVAQKA ESVGRIMPHT EAQIVNVGTG TLAELNTPGE LCIRGYCVML 551 600 ENSTTRP00000000195/1-572 XXXXXXXXXX XXXXXXXXXX XXDIAMMDEQ GFCKILGRSK DMIIRGGENI ENSP00000300441/1-615 GYWGEPQKTE EAVDQDKWYW TGDVATMNEQ GFCKIVGRSK DMIIRGGENI ENSBTAP00000028385/1-614 GYWGEPQKTE EAIGQDKWYR TGDIAMMDEQ GFCKIVGRSK DMIIRGGENI bmy_06715T0/1-648 GYWGEPWKTE EATGHDKWYW TGDIAMMDEQ GFCKILGRSK DMIIRGGENI BACU006434/1-432 GYWGEPWKTE EATGQDKWYR TGDIAMMDEQ GFCKILGRSK DMIIRGGENI 601 650 ENSTTRP00000000195/1-572 YLAELENFLH THPQVQEVQV VGVKDERMGE EICACIQLKK GEKTTAEEIK ENSP00000300441/1-615 YPAELEDFFH THPKVQEVQV VGVKDDRMGE EICACIRLKD GEETTVEEIK ENSBTAP00000028385/1-614 YPAELEDFFH THPQVQEVQV VGVKDDRMGE EICACIRLKE GEKTTAEEIK bmy_06715T0/1-648 YPAELENFFH THPQVQEVQV VGVKDDRMGE EICACIQLKK GEKTTAEEIK BACU006434/1-432 YPAELENFFH THPQVQEVQV VGVKDDRMGE EICACIQLKK GEKTTAEEIK 651 700 ENSTTRP00000000195/1-572 AFCKGKI--- ---------- ---------- ---------- ---------- ENSP00000300441/1-615 AFCKGKI--- ---------- ---------- ---------- ---------- ENSBTAP00000028385/1-614 AFCKGKI--- ---------- ---------- ---------- ---------- bmy_06715T0/1-648 AFCKGKVGPS AHPKHHDVAQ FSNTLCLPTC QPTVPYTQLW DPAQPHALSP BACU006434/1-432 AFCKGKV--- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000000195/1-572 -----SHFKI PRYIVFVTNY PLTVSGKVQK FKLREQMEHH LNL ENSP00000300441/1-615 -----SHFKI PKYIVFVTNY PLTISGKIQK FKLREQMERH LNL ENSBTAP00000028385/1-614 -----SHFKI PRYIVFVTNY PLTVSGKIQK FKLREQMEQH LNL bmy_06715T0/1-648 SGLQISHFKI PRYIVFVTNY PLTVSG---- ---------- --- BACU006434/1-432 ---------- ---------- --------QK FKLREQMEQH LNL