KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:35:55 2014 Check: 00 .. Name: ENSP00000304895/1-1242 Len: 1248 Check: 3814 Weight: 1.00 Name: ENSBTAP00000028392/1-1237 Len: 1248 Check: 3406 Weight: 1.00 Name: bmy_03788T0/1-1245 Len: 1248 Check: 5209 Weight: 1.00 Name: BACU001392/1-1244 Len: 1248 Check: 4322 Weight: 1.00 // 1 50 ENSP00000304895/1-1242 MASPPESDGF SDVRKVGYLR KPKSMHKRFF VLRAASEAGG PARLEYYENE ENSBTAP00000028392/1-1237 MASPPETDGF SDVRKVGYLR KPKSMHKRFF VLRAASEAGG PARLEYYENE bmy_03788T0/1-1245 MASPPETDGF SDVRKVGYLR KPKSMHKRFF VLRAASEAGG PARLEYYENE BACU001392/1-1244 MASPPETDGF SDVRKVGYLR KPKSMHKRFF VLRAASEAGG PARLEYYENE 51 100 ENSP00000304895/1-1242 KKWRHKSSAP KRSIPLESCF NINKRADSKN KHLVALYTRD EHFAIAADSE ENSBTAP00000028392/1-1237 KKWRHKSSAP KRSIPLESCF NINKRADSKN KHLVALYTRD EHFAIAADSE bmy_03788T0/1-1245 KKWRHKSSAP KRSIPLESCF NINKRADSKN KHLVALYTRD EHFAIAADSE BACU001392/1-1244 KKWRHKSSAP KRSIPLESCF NINKRADSKN KHLVALYTRD EHFAIAADSE 101 150 ENSP00000304895/1-1242 AEQDSWYQAL LQLHNRAKGH HDGAAALGAG GGGGSCSGSS GLGEAGEDLS ENSBTAP00000028392/1-1237 AEQDSWYQAL LQLHNRAKGH HDGAAAPGAG GGGGSCSGSS GLGEAGEDLS bmy_03788T0/1-1245 AEQDSWYQAL LQLHNRAKGH HDGAAAPGAG GGGGSCSGSS GLGEAGEDLS BACU001392/1-1244 AEQDSWYQAL LQLHNRAKGH HDGAAAPGAG GGGGSCSGSS GLGEAGEDLS 151 200 ENSP00000304895/1-1242 YGDVPPGPAF KEVWQVILKP KGLGQTKNLI GIYRLCLTSK TISFVKLNSE ENSBTAP00000028392/1-1237 YGDVPPGPAF KEVWQVILKP KGLGQTKNLI GIYRLCLTSK TISFVKLNSE bmy_03788T0/1-1245 YGDVPPGPAF KEVWQVILKP KGLGQTKNLI GIYRLCLTSK TISFVKLNSE BACU001392/1-1244 YGDVPPGPAF KEVWQVILKP KGLGQTKNLI GIYRLCLTSK TISFVKLNSE 201 250 ENSP00000304895/1-1242 AAAVVLQLMN IRRCGHSENF FFIEVGRSAV TGPGEFWMQV DDSVVAQNMH ENSBTAP00000028392/1-1237 AAAVVLQLMN IRRCGHSENF FFIEVGRSAV TGPGEFWMQV DDSVVAQNMH bmy_03788T0/1-1245 AAAVVLQLMN IRRCGHSENF FFIEVGRSAV TGPGEFWMQV DDSVVAQNMH BACU001392/1-1244 AAAVVLQLMN IRRCGHSENF FFIEVGRSAV TGPGEFWMQV DDSVVAQNMH 251 300 ENSP00000304895/1-1242 ETILEAMRAM SDEFRPRSKS QSSSNCSNPI SVPLRRHHLN NPPPSQVGLT ENSBTAP00000028392/1-1237 ETILEAMRAM SDEFRPRSKS QSSSNCSNPI SVPLRRHHLN NPPPSQVGLT bmy_03788T0/1-1245 ETILEAMRAM SDEFRPRSKS QSSSNCSNPI SVPLRRHHLN NPPPSQVGLT BACU001392/1-1244 ETILEAMRAM SDEFRPRSKS QSSSNCSNPI SVPLRRHHLN NPPPSQVGLT 301 350 ENSP00000304895/1-1242 RRSRTESITA TSPASMVGGK PGSFRVRASS DGEGTMSRPA SVDGSPVSPS ENSBTAP00000028392/1-1237 RRSRTESITA TSPASLVGGK QGSFRVRASS DGEGTMSRPA SVDGSPVSPS bmy_03788T0/1-1245 RRSRTESITA TSPASLVGGK QGSFRVRASS DGEGTMSRPA SVDGSPVSPS BACU001392/1-1244 RRSRTESITA TSPASLVGGK QGSFRVRASS DGEGTMSRPA SVDGSPVSPS 351 400 ENSP00000304895/1-1242 TNRTHAHRHR GSARLHPPLN HSRSIPMPAS RCSPSATSPV SLSSSSTSGH ENSBTAP00000028392/1-1237 TNRTHAHRHR GSSRLHPPLN HSRSIPMPSS RCSPSATSPV SLSSSSTSGH bmy_03788T0/1-1245 TNRTHAHRHR GSSRLHPPLN HSRSIPMPSS RCSPSATSPV SLSSSSTSGH BACU001392/1-1244 TNRTHAHRHR GSSRLHPPLN HSRSIPMPSS RCSPSATSPV SLSSSSTSGH 401 450 ENSP00000304895/1-1242 GSTSDCLFPR RSSASVSGSP SDGGFISSDE YGSSPCDFRS SFRSVTPDSL ENSBTAP00000028392/1-1237 GSTSDCLFPR RSSASVSGSP SDGGFISSDE YGSSPCDFRS SFRSVTPDSL bmy_03788T0/1-1245 GSTSDCLFPR RSSASVSGSP SDGGFISSDE YGSSPCDFRS SFRSVTPDSL BACU001392/1-1244 GSTSDCLFPR RSSASVSGSP SDGGFISSDE YGSSPCDFRS SFRSVTPDSL 451 500 ENSP00000304895/1-1242 GHTPPARGEE ELSNYICMGG KGPSTLTAPN GHYILSRGGN GHRCTPGTGL ENSBTAP00000028392/1-1237 GHTPPARGEE ELSNYICMGG KGASTLTAPN GHYILPRGGN GHRYVPAAGL bmy_03788T0/1-1245 GHTPPARGEE ELSNYICMGG KGASTLTAPN GHYILPRSGN GHRYIPAAGL BACU001392/1-1244 GHTPPARGEE ELSNYICMGG KGASTLTAPN GHYILPRSGN GHRHIPAAGL 501 550 ENSP00000304895/1-1242 GTSPALAGDE AASAADLDNR FRKRTHSAGT SPTITHQKTP SQSSVASIEE ENSBTAP00000028392/1-1237 GTSPALPGEE AAGAADLDNR FRKRTHSAGT SPTISHQKTP SQSSVASIEE bmy_03788T0/1-1245 GTSPALTGDE AASAADLDNR FRKRTHSAGT SPTISHQKTP SQSSVASIEE BACU001392/1-1244 GTSPALTGDE AASAADLDNR FRKRTHSAGT SPTISHQKTP SQSSVASIEE 551 600 ENSP00000304895/1-1242 YTEMMPAYPP GGGSGGRLPG HRHSAFVPTR SYPEEGLEMH PLERRGGHHR ENSBTAP00000028392/1-1237 YTEMMPAYPP GGGSGGRVPS YRHSAFVPTH SYPEEGLEMH PLERRGGHHR bmy_03788T0/1-1245 YTEMMPAYPP GGGSGGRVPS YRHSAFVPTH SYPEEGLEMQ PLERRVGHHR BACU001392/1-1244 YTEMMPAYPP GGGSGGRVPS YRHSAFVPTH SYPEEGLEMH PLERRVGHHR 601 650 ENSP00000304895/1-1242 PDSSTLHTDD GYMPMSPGVA PVPSGRKGSG DYMPMSPKSV SAPQQIINPI ENSBTAP00000028392/1-1237 PDTSSLHTDD GYMPMSPGVA PVPGSRKGSG DYMPMSPKSV SAPQQIINPI bmy_03788T0/1-1245 PDTSNLHTDD GYMPMSPGVA PVPGSRKGSG DYMPMSPKSV SAPQQIINPI BACU001392/1-1244 PDTSNLHTDD GYMPMSPGVA PVPGSRKGSG DYMPMSPKSV SAPQQIINPI 651 700 ENSP00000304895/1-1242 RRHPQRVDPN GYMMMSPSGG CSPDIGGGPS SSSSSSNAVP SGTSYGKLWT ENSBTAP00000028392/1-1237 RRHPQRVDPN GYMMMSPSGS CSPDIGGGPS SGGSSSGAAP SGSSYGKLWT bmy_03788T0/1-1245 RRHPQRVDPN GYMMMSPSGS CSPDIGGGPS SGG-SSGAAP SGSSYGKLWT BACU001392/1-1244 RRHPQRVDPN GYMMMSPSGS CSPDIGGGPS SGG-SSGAAP SGSSYGKLWT 701 750 ENSP00000304895/1-1242 NGVGGHHSHV LPHPKPPVES SGGKLLPCTG DYMNMSPVGD SNTSSPSDCY ENSBTAP00000028392/1-1237 NGVGGHHSHA LPHPKLPVES GSGKLLSCTG DYMNMSPVGD SNTSSPSDCY bmy_03788T0/1-1245 NGVGGHHSHA LPHPKLPVES SSGKLLSCTG DYMNMSPVGD SNTSSPSDCY BACU001392/1-1244 NGVGGHHSHA LPHPKLPVES SSGKLLSCTG DYMNMSPVGD SNTSSPSDCY 751 800 ENSP00000304895/1-1242 YGPEDPQHKP VLSYYSLPRS FKHTQRPGEP EEGARHQHLR LSTSSGRLLY ENSBTAP00000028392/1-1237 YGPEDPQHKP VLSYYSLPRS FKHTQRPGEL EEPRHHQHLR LSSSSGRLLY bmy_03788T0/1-1245 YGPEDPQHKP VLSYYSLPRS FKHTQRPGEL EEGARHQHLR LSSSSGRLLY BACU001392/1-1244 YGPEDPQHKP VLSYYSLPRS FKHTQRPGEL EEGARHQHLR LSSSSGRLLY 801 850 ENSP00000304895/1-1242 AATADDSSSS TSSDSLGGGY CGARLEPSLP HPHHQVLQPH LPRKVDTAAQ ENSBTAP00000028392/1-1237 TAAAEDSSSS TSSDSLGGGY CGARPEPGLP HLHHQVLQAH LPRKVDTAAQ bmy_03788T0/1-1245 AAAVEDSSSS TSSDSLGGGY CAARPEPGLP HLHHQVLQPH LPRKVDTAAQ BACU001392/1-1244 AAAVEDSSSS TSSDSLGGGY CAARPEPGLP HLHHQVLQPH LPRKVDTAAQ 851 900 ENSP00000304895/1-1242 TNSRLARPTR LSLGDPKAST LPRAREQ--- -QQQQQPLLH PPEPKSPGEY ENSBTAP00000028392/1-1237 TNNRLARPTR LSLGDPKAST LPRAREQ--- --QPPPPLLL PPEPKSPGEY bmy_03788T0/1-1245 TNSRLARPTR LSLGDPKAST LPRAREQPQP QPQPPPPLLP PPEPKSPGEY BACU001392/1-1244 TNSRLARPTR LSLGDPKAST LPRAREQPQP QPQPPPPLLP PPEPKSPGEY 901 950 ENSP00000304895/1-1242 VNIEFGSDQS GYLSGPVAFH SSPSVRCPSQ LQPAPREEET GTEEYMKMDL ENSBTAP00000028392/1-1237 VNIEFGSDQP GYLSGPVASH SSPSIRCPSQ LQPAPREEDT GAEEYMNMDL bmy_03788T0/1-1245 VNIEFGSDQP GYLSGPGASH SSPSVRCPSQ LQPAPREEET GAEEYMNMDL BACU001392/1-1244 VNIEFGSDQP GYLSGPGASH SSPSVRCPSQ LQPAPREEET GAEEYMNLDL 951 1000 ENSP00000304895/1-1242 GPGRRAAWQE STGVEMGRLG PAPPGAASIC RPTRAVPSSR GDYMTMQMSC ENSBTAP00000028392/1-1237 GPGRRATWQK SVGVQPGRVG PAPPGAASVC RPTRAVPSSC GDYMTMQMGG bmy_03788T0/1-1245 GPGRRAAWRE SAGVQPGSMG PAPPGAASVC RPTRAVPSSR GDYMTMQMGC BACU001392/1-1244 GPGRRAAWRE SAGVQPGSMG PAPPGAASVC RPTRAVPSSR GDYMTMQMGC 1001 1050 ENSP00000304895/1-1242 PRQSYVDTSP AAPVSYADMR TGIAAEEVSL PRATMAAASS SSAASASPTG ENSBTAP00000028392/1-1237 PRQSYVDTSP VAPISYADMR TGVVVEDASL PRATAAAPSS SSTASVSSTA bmy_03788T0/1-1245 PRQSYVDTSP VAPISYADMR TGVVVEEASL PGAAAATPSS SSTASASPAA BACU001392/1-1244 PRQSYVDTSP VAPISYADMR TGVVVEEASL PGAAAATPSS SSTASASPAA 1051 1100 ENSP00000304895/1-1242 PQ-GAAELAA HSSLLGGPQG PGGMSAFTRV NLSPNRNQSA KVIRADPQGC ENSBTAP00000028392/1-1237 PPPGTGELAA RSALL----- -GGPSAFTRV NLSPNRNQSA KVIRADPQGC bmy_03788T0/1-1245 PQ-GAEELAA RSSLLGGPQG PGGPSAFTRV NLSPNRNQSA KVIRADPQGC BACU001392/1-1244 PQ-GAEELAA XXXXX-XXQG PGGPSAFTRV NLSPNRNQSA KVIRADPQGC 1101 1150 ENSP00000304895/1-1242 RRRHSSETFS STPSATRVGN TVPFGAGAAV GG-GGGSSSS SEDVKRHSSA ENSBTAP00000028392/1-1237 RRRHSSETFS STPSATRVGN TMPFGAGAAV GGSGGGSSSS AEDVKRHSSA bmy_03788T0/1-1245 RRRHSSETFS STPSATRAGS TVPFGGGAAA GG-GGGGSSS TEDVKRHSSA BACU001392/1-1244 RRRHSSETFS STPSATRAGN TVPFGGGAAA GG-GGGGSSS TEDVKRHSSA 1151 1200 ENSP00000304895/1-1242 SFENVWLRPG ELGGAPKEPA KLCGAAGGLE NGLNYIDLDL VKDFKQCPQE ENSBTAP00000028392/1-1237 SFENVWLRPG ELGGAPKELA QVCGAAGGLE NGLNYIDLDL VKDFKQRPQE bmy_03788T0/1-1245 SFENVWLRPG ELGGAPKELA QVCGAAGGLE NGLNYIDLDL VKDFKQSPQE BACU001392/1-1244 SFENVWLRPG ELGGAPKELA QVCGAAGGLE NGLNYIDLDL VKDFKQSPQE 1201 1250 ENSP00000304895/1-1242 CTPEPQPPPP PPPHQPLGSG ESSSTRRSSE DLSAYASISF QKQPEDRQ ENSBTAP00000028392/1-1237 CPPQPQPPPL PAPHQPLASS QSGPTSRSSE DLSAYASITF QKQPEDLQ bmy_03788T0/1-1245 RPAQPQPPLP PPPHQSLGRS ESGSTSRSSE DLSAYASISF QKPPEDLQ BACU001392/1-1244 RPAQPQPPPP PPPHQSLGRS ESGSTSRSSE DLSAYASISF QKPPEDLQ