KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:57 2014 Check: 00 .. Name: ENSP00000387282/1-584 Len: 586 Check: 6320 Weight: 1.00 Name: ENSBTAP00000028427/1-562 Len: 586 Check: 9262 Weight: 1.00 Name: ENSTTRP00000004491/1-559 Len: 586 Check: 6700 Weight: 1.00 Name: bmy_03796T0/1-478 Len: 586 Check: 4193 Weight: 1.00 Name: BACU001387/1-478 Len: 586 Check: 4088 Weight: 1.00 // 1 50 ENSP00000387282/1-584 MAASAKRKQE EKHLKMLRDM TGLPHNRKCF DCDQRGPTYV NMTVGSFVCT ENSBTAP00000028427/1-562 MAASAKRKQE EKHLKMLRDM TGLPHNRKCF DCDQRGPTYV NMTVGSFVCT ENSTTRP00000004491/1-559 ---SAKRKQE EKHLKMLRDM TGLPHNRKCF DCDQRGPTYV NMTVGSFVCT bmy_03796T0/1-478 ---------- ----MLL--- ---------- ---------- ---------- BACU001387/1-478 ---------- ----MLL--- ---------- ---------- ---------- 51 100 ENSP00000387282/1-584 SCSGSLRGLN PPHRVKSISM TTFTQQEIEF LQKHGNEVCK QIWLGLFDDR ENSBTAP00000028427/1-562 SCSGSLRGLN PPHRVKSISM TTFTQQEIEF LQKHGNEVCK QIWLGLFDDR ENSTTRP00000004491/1-559 SCSGSLRGLN PPHRVKSISM TTFTQQEIEF LQKHGNEVCK QIWLGLFDDR bmy_03796T0/1-478 ---------- ---------- ---------- -------VCK QIWLGLFDDR BACU001387/1-478 ---------- ---------- ---------- -------VCK QIWLGLFDDR 101 150 ENSP00000387282/1-584 SSAIPDFRDP QKVKEFLQEK YEKKRWYVPP EQAKVVASVH ASISGSSASS ENSBTAP00000028427/1-562 SSAIPDFRDP QKVKEFLQEK YEKKRWYVPP EQAKVVASVH ASISGSSASS ENSTTRP00000004491/1-559 SSAIPDFRDP QKVKEFLQEK YEKKRWYVPP EQAKVVASVH ASISGSSASS bmy_03796T0/1-478 SSAIPDFRDP QKVKEFLQEK YEKKRWYVPP EQAKVVASVH ASISGSSASS BACU001387/1-478 SSAIPDFRDP QKVKEFLQEK YEKKRWYVPP EQAKVVASVH ASISGSSASS 151 200 ENSP00000387282/1-584 TSSTPEVKPL KSLLGDSAPT LHLNKGTPSQ SPVVGRSQGQ QQEKKQFDLL ENSBTAP00000028427/1-562 TSSTPEVKPL KSLLGDSAPA LHLNKGTPSQ SPVVGRSQAQ QQEKKQFDLL ENSTTRP00000004491/1-559 TSSTPEVKPL KSLLGDSAPA LHLNKGTPSQ SPVVGRSQGQ QQEKKQFDLL bmy_03796T0/1-478 TSSTPEVKPL KSLLGDSAPA LHLNKGTPSQ SPVVGRSQGQ QQEKKQFDLL BACU001387/1-478 TSSTPEVKPL KSLLGDSAPA LHLNKGTPSQ SPVVGRSQGQ QQEKKQFDLL 201 250 ENSP00000387282/1-584 SDLGSDIFAA PAPQSTATAN FANFAHFNSH AAQNSANADF ANFDAFGQSS ENSBTAP00000028427/1-562 SDLGSDIFAA PAPQSTATAN FANFAHFNSH AAQNSANADF ANFDAFGQSS ENSTTRP00000004491/1-559 SDLGSDIFAA PAPQSTAAAN FANFAHFNSH AAQNSANADF ANFDAFGQSS bmy_03796T0/1-478 SDLGSDIFAA PAPQSTATAN FANFAHFNSH AAQNSANADF ANFDAFGQSS BACU001387/1-478 SDLGSDIFAA PAPQSTATAN FANFAHFNSH AAQNSANADF ANFDAFGQSS 251 300 ENSP00000387282/1-584 GSSNFGGFPT ASHSPFQPQT TAFRMLSSSC SFGEFTSAFP LQATHSGSAA ENSBTAP00000028427/1-562 GSSNFGGFPT ASHSSFQPQT TG-------- ---------- ------GSAG ENSTTRP00000004491/1-559 GSSNFGGFPT ASHSSFQPQS TG-------- ---------- ------GSAG bmy_03796T0/1-478 GSSNFGGFPT ASHSSFQPQS TG-------- ---------- ------GSAG BACU001387/1-478 GSSNFGGFPT ASHSSFQPQS TG-------- ---------- ------GSAG 301 350 ENSP00000387282/1-584 SVNANFAHFD NFPKSSSADF GTFNTSQSHQ TASAVSKVST NKAGLQTADK ENSBTAP00000028427/1-562 SVNANFAHFD NFPKSSSADF GTFNTSQSHQ TASAVSKVSA NKAGLQTTDK ENSTTRP00000004491/1-559 SVNANFAHFD NFPKSSSADF GTFNTSQSHQ TASAVSKVSA NKAGLQTTDK bmy_03796T0/1-478 SVNANFAHFD NFPKSSSADF GTFNTSQSHQ TASAVSKVSA NKAGLQTTDR BACU001387/1-478 SVNANFAHFD NFPKSSSADF GTFNTSQSHQ TASAVSKVSA NKAGLQTTDK 351 400 ENSP00000387282/1-584 YAALANLDNI FSAGQGGDQG SGFGTTGKAP VGSVVSVPSQ SSASSDKYAA ENSBTAP00000028427/1-562 YAALANLDNI FSAGQGGDQG SGFGTTGKAP VGSVVSVPSQ SSASSDKYAA ENSTTRP00000004491/1-559 YAALANLDNI FSAGQGGDQG SGFGTTGKAP VGSVVSVPSQ SSASSDKYAA bmy_03796T0/1-478 YAALANLDNI FSAGQGGDQG SGFGTTGKAP VGSVVSVPSQ SSASSDKYAA BACU001387/1-478 YAALANLDNI FSAGQGGDQG SGFGTTGKAP VGSVVSVPSQ SSASSDKYAA 401 450 ENSP00000387282/1-584 LAELDSVFSS AATSSNAYTS TSNASSNVFG TVPVVASAQT QPASSSVPAP ENSBTAP00000028427/1-562 LAELDSVFSS AATSSNAYTS TSNASSNVFG TVPVGASAQT QPASSSVPAP ENSTTRP00000004491/1-559 LAELDSVFSS AATSSNAYSS TSNASSNVFG TVPVGASAQT QPASSSVPAP bmy_03796T0/1-478 LAELDSVFSS AATSSNAYSS TSNASSNVFG TVPVGASAQT QPASSSVPAP BACU001387/1-478 LAELDSVFSS AATSSNAYSS TSNASSNVFG TVPVGASAQT QPASSSVPAP 451 500 ENSP00000387282/1-584 FGATPSTNPF VAAAGPSVAS STNPFQTNAR GATAATFGTA SMSMPTGFGT ENSBTAP00000028427/1-562 FGATPSTNPF VAAAGPSVAS STNPFQTNAR GATAATFGTA SMSMPAGFGT ENSTTRP00000004491/1-559 FGATPSTNPF VAAAGPSVAS STNPFQTNAR GATAATFGTA SMSMPAGFGT bmy_03796T0/1-478 FGATPSTNPF VAAAGPSVAS STNPFQTNAR GATAATFGTA SMSMPAGFGT BACU001387/1-478 FGATPSTNPF VAAAGPSVAS STNPFQTNAR GATAATFGTA SMSMPAGFGT 501 550 ENSP00000387282/1-584 PAPYSLPTSF SGSFQQPAFP AQAAFPQQTA FSQQPN--GF AAFGQTKPVV ENSBTAP00000028427/1-562 PAPYSLPTSF SGSFQQPAFP AQAAFPQQTA FSQQPNGAGF AAFGQTKPVV ENSTTRP00000004491/1-559 PTPYSLPTSF SGSFQQPAFP AQAAFPQQTA FSQQPNGAGF AAFGQTKPVV bmy_03796T0/1-478 PAPYSLPTSF SGSFQQPAFP AQAAFPQQTA FSQQPNGAGF AAFGQTKPVV BACU001387/1-478 PAPYSLPTSF SGSFQQPAFP AQAAFPQQTA FSQQPNGAGF AAFGQTKPVV 551 600 ENSP00000387282/1-584 TPFGQVAAAG VSSNPFMTGA PTGQFPTGSS STNPFL ENSBTAP00000028427/1-562 TPFGQVGAAG VSSNPFMTGA PTGQFPTGSS STNPFL ENSTTRP00000004491/1-559 TPFGQVAAAG VSSNPFMTGA PTGQFPTGSS STNPFL bmy_03796T0/1-478 TPFGQVAAAG VSSNPFMTGA PTGQFPTGSS STNPFL BACU001387/1-478 TPFGQVAAAG VSSNPFMTGA PTGQFPTGSS STNPFL