KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:35:57 2014 Check: 00 ..
Name: BACU001384/1-103 Len: 148 Check: 3348 Weight: 1.00
Name: ENSP00000351671/1-96 Len: 148 Check: 7948 Weight: 1.00
Name: ENSBTAP00000028430/1-96 Len: 148 Check: 6048 Weight: 1.00
Name: bmy_03800T0/1-102 Len: 148 Check: 7601 Weight: 1.00
Name: ENSTTRP00000012435/1-96 Len: 148 Check: 8022 Weight: 1.00
//
1 50
BACU001384/1-103 -MSPRWAWML AHQKQFFSIH QPHYTIFKLS DSLTLLASGK VRFYGRVQET
ENSP00000351671/1-96 -MCCTKSLLL AALMSVLLLH ---------- ---------- --LCGESE--
ENSBTAP00000028430/1-96 MMCSSKNLLL AALMSVLLLH ---------- ---------- --FCSKSE--
bmy_03800T0/1-102 ---------- ---MSVLLLH ---------- ---------- --LCSKSE--
ENSTTRP00000012435/1-96 -MCSSKSLLL AALMSLLLLH ---------- ---------- --LCSKSE--
51 100
BACU001384/1-103 LVQSESAGYE SSNFDCCLQY TEKILHPKFI VGFTQQLANE ACDINAVI--
ENSP00000351671/1-96 ---------A ASNFDCCLGY TDRILHPKFI VGFTRQLANE GCDINAIIFH
ENSBTAP00000028430/1-96 ---------- ASNFDCCLRY TERILHPSIL VGFTQQLANE ACDINAVVFY
bmy_03800T0/1-102 ---------A ASNFDCCLQY TEKILHPKFI VGFTQQLANE ACDINAVILY
ENSTTRP00000012435/1-96 ---------A ASNFDCCLQY TEKILHPKFI VGFTQQLANE ACDINAVILY
101 150
BACU001384/1-103 ---------- ---------- ---------- ---------Q RVKKM---
ENSP00000351671/1-96 TKKKLSVCAN PKQTWVKYIV RLL------- --------SK KVKNM---
ENSBTAP00000028430/1-96 TRKKLAVCAD PKKKWVKQVV HML------- --------SQ RVKRM---
bmy_03800T0/1-102 TRRRLAVCAD PKKNWVKQAV HILRNPDFLI WLLSCLSKSQ EDVKMDTP
ENSTTRP00000012435/1-96 TKRRLAVCAD PKKSWVKHVV HIL------- --------SQ RVKKM---