KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:35:58 2014 Check: 00 .. Name: bmy_03801T0/1-409 Len: 446 Check: 2297 Weight: 1.00 Name: ENSP00000311899/1-415 Len: 446 Check: 7936 Weight: 1.00 Name: ENSTTRP00000012439/1-414 Len: 446 Check: 118 Weight: 1.00 Name: ENSBTAP00000028431/1-413 Len: 446 Check: 5855 Weight: 1.00 // 1 50 bmy_03801T0/1-409 MRADAFRCLA VSMTTKSVGW WSPGERMKLK SLLLRYYPPG IMLEYEKSGQ ENSP00000311899/1-415 ---------- ---------- ------MKLK SLLLRYYPPG IMLEYEKHGE ENSTTRP00000012439/1-414 ---------- ---------- ------MKLK GLLLRYYPPG IMLEYEESGQ ENSBTAP00000028431/1-413 ---------- ---------- ------MKLK SLLLRYYPPG IMLEYEKSGQ 51 100 bmy_03801T0/1-409 LKTKSIDLLD LHTSTDVNAL VEEIQKAEPL ITASRADQVK LLIQRLQNKL ENSP00000311899/1-415 LKTKSIDLLD LGPSTDVSAL VEEIQKAEPL LTASRTEQVK LLIQRLQEKL ENSTTRP00000012439/1-414 LKTKSIDLLD LRTSTDVNAL VQEIQKAEPL ITASRANQVK LLIQRLQNKL ENSBTAP00000028431/1-413 LKTKSIDLLD LDPSTDVSAL VEEIQKAEPL ITASRSDQVK LLIQRLQNKL 101 150 bmy_03801T0/1-409 GQYSNHKFYL FKLILSDAKY SGNLLYSSVP FTRG--CFIT GSYDRTCKLW ENSP00000311899/1-415 GQNSNHTFYL FKVLKAHI-- ---LPLTNVA LNKSGSCFIT GSYDRTCKLW ENSTTRP00000012439/1-414 GQYSNHKFYL FKVLRAHI-- ---LPLTNVA LNKSGSCFIT GSYDRTCKLW ENSBTAP00000028431/1-413 GQHSNHKFYL FKVLRAHI-- ---LPLTNVA LNKSGSCFIT GSYDRTCKLW 151 200 bmy_03801T0/1-409 DTASGEELHT LEGHRNVVYA IAFNNPYGDK IATGSFDKTC KLWSVETGNC ENSP00000311899/1-415 DTASGEELNT LEGHRNVVYA IAFNNPYGDK IATGSFDKTC KLWSVETGKC ENSTTRP00000012439/1-414 DTASGEELHT LEGHRNVVYA VAFNNPYGDK IATGSFDKTC KLWSVETGNC ENSBTAP00000028431/1-413 DTASGEELHT LEGHRNVVYA IAFNNPYGDK IATGSFDKTC KLWSVETGKC 201 250 bmy_03801T0/1-409 YHTFRGHTAE IVCLSFNPQS TLVATGSMDT TAKLWDIQNG EEVFTLTGHS ENSP00000311899/1-415 YHTFRGHTAE IVCLSFNPQS TLVATGSMDT TAKLWDIQNG EEVYTLRGHS ENSTTRP00000012439/1-414 YHTFRGHTAE IVCLSFNPQS TLVATGSMDT TAKLWDIQNG EEVFTLTGHS ENSBTAP00000028431/1-413 YHTFRGHTAE IVCLSFNPQS TLVATGSMDT TAKLWDIQSG EEVFTLTTAS 251 300 bmy_03801T0/1-409 AEIISLSFNT SGNRIITGSF DHTVTVWDAD TGRKVYTLIG HCAEISSALF ENSP00000311899/1-415 AEIISLSFNT SGDRIITGSF DHTVVVWDAD TGRKVNILIG HCAEISSASF ENSTTRP00000012439/1-414 AEIISLSFNT SGNRIITGSF DHTVTVWDAD TGRKVYTLIG HCAEISSALF ENSBTAP00000028431/1-413 AEIISLSF-T SGNRIITGSL SH-ITVWEAD TGRKVYTLIG HCAEISSAVF 301 350 bmy_03801T0/1-409 NWDCSLILTG SMDKTCMLWD ATNGKCVATL TGHDDEILDS CFDYTGKLIA ENSP00000311899/1-415 NWDCSLILTG SMDKTCKLWD ATNGKCVATL TGHDDEILDS CFDYTGKLIA ENSTTRP00000012439/1-414 NWDCSLILTG SMDRTCMLWD ATDGKCVATL TGHGDEILDS CFDYTGKLIA ENSBTAP00000028431/1-413 NWDCSLILTG SMDKTCKLWD AVNGKCVATL TGHDDEILDS CFDYTGKLIA 351 400 bmy_03801T0/1-409 TASADDEFIY VSTLLKK--- -------EQQ EFSVQPQENA LPN------- ENSP00000311899/1-415 TASADGTARI FSAATRKCIA KLEGHEGEIS KISFNPQGNH LLTGSSDKTA ENSTTRP00000012439/1-414 TASADGTARV FSAATRKCIT K-EGQVGEIS KISFNPQGNR LLTGSSDKTA ENSBTAP00000028431/1-413 TASADGTARI FSAATRECVT KLEGHEGEIS KISFNPQGNR LLTGSSDKTA 401 450 bmy_03801T0/1-409 --WKAMKVK- ---------- -----FQRSG YVGLYSNAQS VVWLKA ENSP00000311899/1-415 RIWDAQTGQC LQVLEGHTDE IFSCAFNYKG NIVITGSKDN TCRIWR ENSTTRP00000012439/1-414 RIWDVQTGQC FQVLEGHTDE IFSCAFNYKG DIIITGSKDN TCRIWR ENSBTAP00000028431/1-413 RIWDAQTGQC LQVLEGHTDE IFSCAFNYKG DIIITGSKDN TCRIWR