KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:01 2014 Check: 00 .. Name: ENSTTRP00000012427/1-995 Len: 1034 Check: 7101 Weight: 1.00 Name: ENSP00000408979/1-1032 Len: 1034 Check: 5039 Weight: 1.00 Name: ENSBTAP00000028441/1-1034 Len: 1034 Check: 6904 Weight: 1.00 Name: bmy_03878T0/1-528 Len: 1034 Check: 3350 Weight: 1.00 Name: BACU008158/1-715 Len: 1034 Check: 6057 Weight: 1.00 // 1 50 ENSTTRP00000012427/1-995 ---------- ---------- ---------- --------DD SVVIGGKPYI ENSP00000408979/1-1032 --MAETNNEC SIKVLCRFRP LNQAEILRGD KFIPIFQGDD SVVIGGKPYV ENSBTAP00000028441/1-1034 TTMTETNNEC SIKVLCRFRP LNQAEILRGD KFIPIFQGDD SVVIGGKPYV bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 --MAETNNEC SIKVLCRFRP LNQAEILRGD KFIPIFQGDD SVVIGGKPYI 51 100 ENSTTRP00000012427/1-995 FDRVFPPNTT QEQVYHACAM QIVKDVLAGY NGTIFAYGQT SSGKTHTMEG ENSP00000408979/1-1032 FDRVFPPNTT QEQVYHACAM QIVKDVLAGY NGTIFAYGQT SSGKTHTMEG ENSBTAP00000028441/1-1034 FDRVFPPNTT QEQVYHACAM QIVKDVLAGY NGTIFAYGQT SSGKTHTMEG bmy_03878T0/1-528 ---------- ---------M QIVKDVLAGY NGTIFAYGQT SSGKTHTMEG BACU008158/1-715 FDRVFPPNTT QEQVYHACAM QIVKDVLAGY NGTIFAYGQT SSGKTHTMEG 101 150 ENSTTRP00000012427/1-995 KLHDPQLMGI IPRIAQDIFN HIYSMDENLE FHIKVSYFEI YLDKIRDLLX ENSP00000408979/1-1032 KLHDPQLMGI IPRIARDIFN HIYSMDENLE FHIKVSYFEI YLDKIRDLLD ENSBTAP00000028441/1-1034 KLHDPQLMGI IPRIARDIFN HIYSMDENLE FHIKVSYFEI YLDKIRDLLD bmy_03878T0/1-528 KLHDPQLMGI IPRIAQDIFN HIYSMDENLE FHIKVSYFEI YLDKIRDLLD BACU008158/1-715 KLHDPQLMGI IPRIAQDIFN HIYSMDENLE FHIKVSYFEI YLDKIRDLLD 151 200 ENSTTRP00000012427/1-995 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000408979/1-1032 VTKTNLSVHE DKNRVPFVKG CTERFVSSPE EILDVIDEGK SNRHVAVTNM ENSBTAP00000028441/1-1034 VTKTNLSVHE DKNRVPFVKG CTERFVSSPE EILDVIDEGK SNRHVAVTNM bmy_03878T0/1-528 VTKTNLSVHE DKNRVPFVKG CTERFVSSPE EILDVIDEGK SNRHVAVTNM BACU008158/1-715 VTKTNLSVHE DKNRVPFVKG CTERFVSSPE EILDVIDEGK SNRHVAVTNM 201 250 ENSTTRP00000012427/1-995 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VSKTGAEGAV ENSP00000408979/1-1032 NEHSSRSHSI FLINIKQENM ETEQKLSGKL YLVDLAGSEK VSKTGAEGAV ENSBTAP00000028441/1-1034 NEHSSRSHSI FLINIKQENM ETEQKLSGKL YLVDLAGSEK VSKTGAEGAV bmy_03878T0/1-528 NEHSSRSHSI FLINIKQENM ETEQKLSGKL YLVDLAGSEK VSKTGAEGAV BACU008158/1-715 NEHSSRSHSI FLINIKQENM ETEQKLSGKL YLVDLAGSEK VSKTGAEGAV 251 300 ENSTTRP00000012427/1-995 LDEAKNINKS LSALGNVISA LAEGTKSYVP YRDSKMTRIL QDSLGGNCRT ENSP00000408979/1-1032 LDEAKNINKS LSALGNVISA LAEGTKSYVP YRDSKMTRIL QDSLGGNCRT ENSBTAP00000028441/1-1034 LDEAKNINKS LSALGNVISA LAEGTKSYVP YRDSKMTRIL QDSLGGNCRT bmy_03878T0/1-528 LDEAKNINKS LSALGNVISA LAEGTKSYVP YRDSKMTRIL QDSLGGNCRT BACU008158/1-715 LDEAKNINKS LSALGNVISA LAEGTKSYVP YRDSKMTRIL QDSLGGNCRT 301 350 ENSTTRP00000012427/1-995 TMFICCSPSN YNDAETKSTL MFGQRAKTIK NTASVNLELT AEQWKKKYEK ENSP00000408979/1-1032 TMFICCSPSS YNDAETKSTL MFGQRAKTIK NTASVNLELT AEQWKKKYEK ENSBTAP00000028441/1-1034 TMFICCSPSS FNDAETKSTL MFGQRAKTIK NTASVNLELT AEQWKKKYEK bmy_03878T0/1-528 TMFICCSPSN YNDAETKSTL MFGQRAKTIK NTASVNLELT AEQWKKKYEK BACU008158/1-715 TMFICCSPSN YNDAETKSTL MFGQRAKTIK NTASVNLELT AEQWKKKYEK 351 400 ENSTTRP00000012427/1-995 EKEKTKAQKE TIAKLETELS RWRSGEDVPE TERLAGEDAA LGAELCEETP ENSP00000408979/1-1032 EKEKTKAQKE TIAKLEAELS RWRNGENVPE TERLAGEEAA LGAELCEETP ENSBTAP00000028441/1-1034 EKEKTKAQKE TIAKLEAELS RWRNGENVPE TERLAGEEAT LGAELCEETP bmy_03878T0/1-528 EKEKTKAQKE TIAKLETELS RWRSGEDVPE TERLAGEDAA LGAELCEETP BACU008158/1-715 EKEKTKAQKE TIAKLETELS RWRSGEDVPE TERLAGEDAA LGAELCEETP 401 450 ENSTTRP00000012427/1-995 VNDNSSIVVR IAPEERQKYE EEIRRLYKQL DDKDDEINQQ SQLIEKLKQQ ENSP00000408979/1-1032 VNDNSSIVVR IAPEERQKYE EEIRRLYKQL DDKDDEINQQ SQLIEKLKQQ ENSBTAP00000028441/1-1034 VNDNSSIVVR IAPEERQKYE EEIRRLYKQL DDKDDEINQQ SQLIEKLKQQ bmy_03878T0/1-528 VNDNSSIVVR IAPEERQKYE EEIRRLYKQL DDKDDEINQQ SQLIEKLKQQ BACU008158/1-715 VNDNSSIVVR IAPEERQKYE EEIRRLYKQL DDKDDEINQQ SQLIEKLKQQ 451 500 ENSTTRP00000012427/1-995 MLDQEELLVS TRGDNEKVQQ ELSHLQSEND AAKDEVKEVL QALEELAMNY ENSP00000408979/1-1032 MLDQEELLVS TRGDNEKVQR ELSHLQSEND AAKDEVKEVL QALEELAVNY ENSBTAP00000028441/1-1034 MLDQEELLVS TRGDNEKVQR ELSHLQSEND AAKDEVKEVL QALEELAMNY bmy_03878T0/1-528 MLDQEELLVS TRGDNEKVQQ ELSHLQSEND AAKDEVKEVL QALEELAMNY BACU008158/1-715 MLDQEELLVS TRGDNEKVQQ ELSHLQSEND AAKDEVKEVL QALEELAMNY 501 550 ENSTTRP00000012427/1-995 DQKSQEVEEK SQQNQLLVDE LSQKVATMLS LESELQRLQE VSGHQRKRIA ENSP00000408979/1-1032 DQKSQEVEEK SQQNQLLVDE LSQKVATMLS LESELQRLQE VSGHQRKRIA ENSBTAP00000028441/1-1034 DQKSQEVEEK SQQNQLLVDE LSQKVATMLS LESELQRLQE VSGHQRKRIA bmy_03878T0/1-528 DQKSQEVEEK SQQNQLLVDE LSQKVATMLS LESELQRLQE VSGHQRKRIA BACU008158/1-715 DQKSQEVEEK SQQNQLLVDE LSQKVATMLS LESELQRLQE VSGHQRKRIA 551 600 ENSTTRP00000012427/1-995 EVLNGLMKDL SEFSVIVGNG EIKLPVEISG AIEEEFTVAR LYISKIKSEV ENSP00000408979/1-1032 EVLNGLMKDL SEFSVIVGNG EIKLPVEISG AIEEEFTVAR LYISKIKSEV ENSBTAP00000028441/1-1034 EVLNGLMKDL SEFSVIVGNG EIKLPVEISG AIEEEFTVAR LYISKIKSEV bmy_03878T0/1-528 EVLNGLMKDL SEFSVIVGNG EIKL---VSG E--------- ---------- BACU008158/1-715 EVLNGLMKDL SEFSVIVGNG EIKLPVEISG AIEEEFTVAR LYISKIKSEV 601 650 ENSTTRP00000012427/1-995 KSVVKRCRQL ENLQVECHRK MEVTGRELSS CQLLISQHEA KIRSLTEYMQ ENSP00000408979/1-1032 KSVVKRCRQL ENLQVECHRK MEVTGRELSS CQLLISQHEA KIRSLTEYMQ ENSBTAP00000028441/1-1034 KSVVKRCRQL ENLQVECHRK MEVTGRELSS CQLLISQHEA KIRSLTEYMQ bmy_03878T0/1-528 ---------- ---------- ---RGGSLVQ VILVLG---- ---------- BACU008158/1-715 KSVVKRCRQL ENLQVECHRK MEVTGRELSS CQLLISQHEA KIRSLTEYMQ 651 700 ENSTTRP00000012427/1-995 SVELKKRHLE ESYDSLSDEL AKLQAQETVH EVALKDKEPD TQDSEDVKKA ENSP00000408979/1-1032 SVELKKRHLE ESYDSLSDEL AKLQAQETVH EVALKDKEPD TQDADEVKKA ENSBTAP00000028441/1-1034 SVELKKRHLE ESYDSLSDEL AKLQAQETVH EVTLKDKEPD TQDTEDVKKA bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 SVELKKRHLE ESYDSLSDEL AKLQAQETVH EVALKDKEPD TQDSEDVKAS 701 750 ENSTTRP00000012427/1-995 LELQMDSHRE AHHRXXXXXX XXXXXXXXXX XXXXXVNQKL QLELEKLQAD ENSP00000408979/1-1032 LELQMESHRE AHHRQLARLR DEINEKQKTI DELKDLNQKL QLELEKLQAD ENSBTAP00000028441/1-1034 LELQMESHRE AHHRQLARLR DEINEKQKTI DELKDLNQKL QLELEKLQAD bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 GE-------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000012427/1-995 YEKLKNEEHE KSTKLQELTF LYERHEQSKQ DLKGLEETVA RELQTLHNLR ENSP00000408979/1-1032 YEKLKSEEHE KSTKLQELTF LYERHEQSKQ DLKGLEETVA RELQTLHNLR ENSBTAP00000028441/1-1034 YEKLKNEEHE KSTKLQELTF LYERHEQSKQ DLKGLEETVA RELQTLHNLR bmy_03878T0/1-528 ---------- ---------- ---------- -------TGG R--------- BACU008158/1-715 ---------- ---------- ---------- ---GMGRTGA RQ-------- 801 850 ENSTTRP00000012427/1-995 KLFVQDVTTR VKKSAEMEPE DSGGIHSQKQ KISFLENNLE QLTKVHKQLV ENSP00000408979/1-1032 KLFVQDVTTR VKKSAEMEPE DSGGIHSQKQ KISFLENNLE QLTKVHKQLV ENSBTAP00000028441/1-1034 KLFVQDVTTR VKKSAEMEPE DSGGIHSQKQ KISFLENNLE QLTKVHKQLV bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000012427/1-995 RDNADLRCEL PKLEKRLRAT AERVKALEGA LKEAKEGAM- DKRRYQQEVD ENSP00000408979/1-1032 RDNADLRCEL PKLEKRLRAT AERVKALEGA LKEAKEGAMK DKRRYQQEVD ENSBTAP00000028441/1-1034 RDNADLRCEL PKLEKRLRAT AERVKALEGA LKEAKEGAMK DKRRYQQEVD bmy_03878T0/1-528 -------CR- ---------- ---------- ---------- ---------- BACU008158/1-715 ------GCAG PH-------- ---------- ---------- ---------- 901 950 ENSTTRP00000012427/1-995 RIKEAVRYKS SSKRGHSAQI AKPVRPGHYP ASSPTNAYGT RSPECISYTN ENSP00000408979/1-1032 RIKEAVRYKS SGKRGHSAQI AKPVRPGHYP ASSPTNPYGT RSPECISYTN ENSBTAP00000028441/1-1034 RIKEAVRYKS SGKRGHSAQI AKPVRPGHYP ASSPTNPYGT RSPECISYTN bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000012427/1-995 SLFQNYQNLY LQAAPSSTSD MYFANSCTSS GATSSGAPLA SYQKANMDNG ENSP00000408979/1-1032 SLFQNYQNLY LQATPSSTSD MYFANSCTSS GATSSGGPLA SYQKANMDNG ENSBTAP00000028441/1-1034 SLFQNYQNLY LQAAPSSTSD MYFANSCTSS GATSSGGPLT SYQKANMDNG bmy_03878T0/1-528 ---------- ---------- ---------- ---------- ---------- BACU008158/1-715 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000012427/1-995 NATDINDNRS DLPCGYEADD QAKLFPLHQE TAAS ENSP00000408979/1-1032 NATDINDNRS DLPCGYEAED QAKLFPLHQE TAAS ENSBTAP00000028441/1-1034 NATDINDNRS DLPCGYEAED QAKLFPLHQE TAAS bmy_03878T0/1-528 ---------- ---------- ---------- ---- BACU008158/1-715 ---------- ---------- ---------- ----