KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:01 2014 Check: 00 .. Name: bmy_13946T0/1-262 Len: 321 Check: 6506 Weight: 1.00 Name: ENSP00000332613/1-273 Len: 321 Check: 3386 Weight: 1.00 Name: ENSBTAP00000028443/1-282 Len: 321 Check: 7150 Weight: 1.00 Name: BACU019844/1-193 Len: 321 Check: 7929 Weight: 1.00 Name: ENSTTRP00000011076/1-196 Len: 321 Check: 4044 Weight: 1.00 // 1 50 bmy_13946T0/1-262 MWGYHQGEAS AVNEPGAKRG AVSFKVTFCT FKQFCFGKLS SSSLCEFSRR ENSP00000332613/1-273 ---------- ---------- ---------- ------MRLP GVPLARPA-- ENSBTAP00000028443/1-282 ---------- ---------- ---------- ------MRPP GRCGVPRASP BACU019844/1-193 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011076/1-196 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13946T0/1-262 LWNIWGMFFL LSHGFKWERE KFPGQQEGGV YCRAASRPVS SAGSELSPGW ENSP00000332613/1-273 LLLLLPLLAP LL-------- --GTGAPAEL RVRVRLPDGQ VTEESLQADS ENSBTAP00000028443/1-282 ALLLLTLLVP LLWAPRGVGA GAGAGAPSEL RVRVRLPDGQ VTEESLQADS BACU019844/1-193 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011076/1-196 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_13946T0/1-262 AGEEAPPALA GSHSSALPHQ -----DVKIF RALILGELEK GQSQFQALCF ENSP00000332613/1-273 DADSISLELR KPDGTLVSFT ADFKKDVKVF RALILGELEK GQSQFQALCF ENSBTAP00000028443/1-282 DADSISLELR KPDGTLISFT ADFKKDVKIF RALILGELEK GQSQFQALCF BACU019844/1-193 ---------- ---------- -----DVKIF RALILGELEK GQSQFQALCF ENSTTRP00000011076/1-196 ---------- ---------- -----DVKIF RALILGELEK GQSQFQALCF 151 200 bmy_13946T0/1-262 VTRLHHNEII PSEAMAKLRQ KNPRAVRQAE EVRGLEQMHM DITVNFSQGG ENSP00000332613/1-273 VTQLQHNEII PSEAMAKLRQ KNPRAVRQAE EVRGLEHLHM DVAVNFSQGA ENSBTAP00000028443/1-282 VTRLHHNEII PSEAMAKLRQ KNPRAVRQAE EVRGPEQMHM DIAVNFSQGA BACU019844/1-193 VTRLHHNEII PSEAMAKLRQ KNPQAVRQAE EVRGLEQMHM DITVNFSQGG ENSTTRP00000011076/1-196 ATRLHHNEII PSEAMAKLRQ KNPRAVRQAE EVRGLEQMHM DVTVNFSQGG 201 250 bmy_13946T0/1-262 LLSPHLRNVC AEAADAIYTR QEDVRFWLEQ DVAASLWAG- ---------- ENSP00000332613/1-273 LLSPHLHNVC AEAVDAIYTR QEDVRFWLEQ GVDSSVFEAL PKASEQAELP ENSBTAP00000028443/1-282 LLSPHLRNVC AEAVDAIYTR QEDVRFWLEQ GVDGSVFEAL PKASEQVLLP BACU019844/1-193 LLSPHLRNVC AEAADAIYTR QEDVRFWLEQ GVDSFVFEAL PKASEQMLLP ENSTTRP00000011076/1-196 LLSPHLRNVC AEAADAIYTR QEDVRFWLEQ GVDSFVFEAL PKASEPMLLP 251 300 bmy_13946T0/1-262 --------GG P---REALRL PL-------- ----RPEP-- -GL------- ENSP00000332613/1-273 RCRQVGDHGK PCVCRYGLSL AWYPCMLKYC HSRDRPTPYK CGIRSCQKSY ENSBTAP00000028443/1-282 RCGHVGDRGK PCICRYGLSL AWYPCMLKYC HGRDRPAPYK CGIRSCQKNY BACU019844/1-193 RCGQVGDRGK PCVCRYGLSL AWYPCMLKYC HGRDRPTPYK CGIRSCQKSY ENSTTRP00000011076/1-196 RCGQVGDRGK PCVCRYGLSL AWYPCMVKYC RGRDRPTPYK CGIRSCQKSY 301 350 bmy_13946T0/1-262 -----VPLHA QVL--PRP-- - ENSP00000332613/1-273 SFDFYVPQRQ LCLWDEDPYP G ENSBTAP00000028443/1-282 SFDFYVPQKQ LCLWDEDP-- - BACU019844/1-193 SFDFYVPQRQ LCLWDEDP-- - ENSTTRP00000011076/1-196 SFDFYVPQRQ LCLWDEDPPA R