KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:01 2014 Check: 00 .. Name: bmy_13947T0/1-417 Len: 466 Check: 11 Weight: 1.00 Name: ENSTTRP00000011083/1-429 Len: 466 Check: 9632 Weight: 1.00 Name: ENSP00000260264/1-438 Len: 466 Check: 3230 Weight: 1.00 Name: ENSBTAP00000028444/1-386 Len: 466 Check: 580 Weight: 1.00 // 1 50 bmy_13947T0/1-417 ---------- ---------- ---------- -------MLS PCLHLQIKTE ENSTTRP00000011083/1-429 --MVNLEPMH PDIKMSGDVA DSTVARSALS QVETXXXXXX XXXXXXIKTE ENSP00000260264/1-438 MESPRTAKGG RDIKMSGDVA DSTDARSTLS QVEPGNDRNG LDFNRQIKTE ENSBTAP00000028444/1-386 ---------- ---------- ---------- ---------- -----QIKTE 51 100 bmy_13947T0/1-417 DLSDSLQQTL SHRPCHLSQG PAMMPGNQMS GVNGSPSREA LIFSEGQFWD ENSTTRP00000011083/1-429 DLSDSLQQTL SHRPCH-SQG PAMIPGNQMS GVNGSPSRD- ---------- ENSP00000260264/1-438 DLSDSLQQTL SHRPCHLSQG PAMMSGNQMS GLNASPCQD- ---------- ENSBTAP00000028444/1-386 DLSDSLQQTL SHRPCHLSQG PAMMPGNQMS G-------D- ---------- 101 150 bmy_13947T0/1-417 ACISLHRTWL PSTRSSSLCW FPDTYSLSPS SCYLRPSLGS KVRNPGGCYI ENSTTRP00000011083/1-429 -MASLHPL-- -----QQLVL VPG--HLQSV SQFLLSQ--- --SQPGQ--Q ENSP00000260264/1-438 -MASLHPL-- -----QQLVL VPG--HLQSV SQFLLSQ--- --TQPGQ--Q ENSBTAP00000028444/1-386 -MASLHPL-- -----QQLVL VPG--HLQSV SQFLLSQ--- --SQPGQ--Q 151 200 bmy_13947T0/1-417 GLQSNLLPFP QQQSSLLLPQ TGPGLASQAV GRPGVPGSSL EPHLEASQHL ENSTTRP00000011083/1-429 GLQSNLLSFP QQQSSLLLPQ TGLGLASQAV GCPGVPGSSL -PHLEASQHL ENSP00000260264/1-438 GLQPNLLPFP QQQSGLLLPQ TGPGLASQAF GHPGLPGSSL EPHLEASQHL ENSBTAP00000028444/1-386 GLQPNLLPFP QQQSSLLLPQ TGPGLTSQAV GRPGLPGSSL EPHLEASQHL 201 250 bmy_13947T0/1-417 PVPKHLPSSG GADEPSDLEE LEKFAKTFKQ RRIKLGFTQG DVGLAMGKLY ENSTTRP00000011083/1-429 P-PQHLPSS- GEDEPSDLEE LEK--AKFKQ RRIKLGFTQG DVGLAMGKLY ENSP00000260264/1-438 PVPKHLPSSG GADEPSDLEE LEKFAKTFKQ RRIKLGFTQG DVGLAMGKLY ENSBTAP00000028444/1-386 PVPKHLPSAG GADEPSDLEE LEKFAKTFKQ RRIKLGFTQG DVGLAMGKLY 251 300 bmy_13947T0/1-417 GNDFSQTTIS RFEALNLSFK NMCKLKPLLE KWLNDAESSP SDPSVSTPSS ENSTTRP00000011083/1-429 GNDFSQTTIS RFEALNLSFK NMCKLKPLLE KWLNDAESSP SDPSVSTPSS ENSP00000260264/1-438 GNDFSQTTIS RFEALNLSFK NMCKLKPLLE KWLNDAESSP SDPSVSTPSS ENSBTAP00000028444/1-386 GNDFSQTTIS RFEALNLSFK NMCKLKPLLE KWLNDAESSP SDPSMSTPNS 301 350 bmy_13947T0/1-417 YPTLSEVFGR KRKKRTSIET SIRLTLEKRF QDNPKPSSEE ISMIAEQLSM ENSTTRP00000011083/1-429 YPTLSEVFGR KRKKRTSIET SIRLTLEKRF QDNPKPSSEE ISMIAEQLSM ENSP00000260264/1-438 YPSLSEVFGR KRKKRTSIET NIRLTLEKRF QDNPKPSSEE ISMIAEQLSM ENSBTAP00000028444/1-386 YPALSEVFGR KRKKRTSIET NIRLTLEKRF QDNPKPSSEE ISMIAEQLSM 351 400 bmy_13947T0/1-417 EKEVVRVWFC NRRQKEKRIN CPVATPIKSP MYSSRLVSPS GSLGPLSVPP ENSTTRP00000011083/1-429 EKEVVRVWFC NRRQKEKRIN CPVATPIKSP TYSSRLVSPS GSLGPLSVPP ENSP00000260264/1-438 EKEVVRVWFC NRRQKEKRIN CPVATPIKPP VYNSRLVSPS GSLGPLSVPP ENSBTAP00000028444/1-386 EKEVVRVWFC NRRQKEKRIN CPVATPIKSP MYSSRLVSPS GSLGPLSVPP 401 450 bmy_13947T0/1-417 VHSTMPGTVT SSCSSGNNSR PSSPGPGLHA SSPTASQNNS KAAVNSSTSF ENSTTRP00000011083/1-429 VHSSMPGTVT SSCPSGNNSR -SSPGPGLHA NSPTASQNNS KAAVNSSTSF ENSP00000260264/1-438 VHSTMPGTVT SSCSPGNNSR PSSPGSGLHA SSPTASQNNS KAAVNSASSF ENSBTAP00000028444/1-386 VHSTMPGTVT SSCSPGNNSR PSSPGSGLQA SSPTASQNNS KVAVNSSSSF 451 500 bmy_13947T0/1-417 NSSG------ ------ ENSTTRP00000011083/1-429 NSSGSWYRWN HPTYLH ENSP00000260264/1-438 NSSGSWYRWN HSTYLH ENSBTAP00000028444/1-386 NSSGSWYRWS HPTYLH