KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:04 2014 Check: 00 .. Name: ENSP00000423390/1-913 Len: 943 Check: 512 Weight: 1.00 Name: ENSBTAP00000028452/1-896 Len: 943 Check: 4635 Weight: 1.00 Name: ENSTTRP00000012963/1-904 Len: 943 Check: 9523 Weight: 1.00 Name: bmy_03712T0/1-928 Len: 943 Check: 260 Weight: 1.00 Name: BACU005442/1-887 Len: 943 Check: 5571 Weight: 1.00 // 1 50 ENSP00000423390/1-913 MAALFLRGFV QIGNCKTGIS KSKEAFIEAV ERKKKDRLVL YFKSGKYSTF ENSBTAP00000028452/1-896 MDPVAAHGFV QLWNKKNGTS KSKEAIVELS GKKKKTKLVI HFCNGESRTF ENSTTRP00000012963/1-904 MAAVIVRGLV RIGSKKTKVS KVREACIEIV ERERNVILVV YFNTGAYASF bmy_03712T0/1-928 MAALMVHGFV QIWNTKTGIT ELNEACVEIV ERRRKVTLVI SLSTGEYTTF BACU005442/1-887 MAALMVHGFV QIWNLKTGKT ELNEACIEIV EKRRNVMLVI SLGNGEYTAF 51 100 ENSP00000423390/1-913 RLSDNIQNVV LKSYRGNQNH LHLTLQNNNG LFIEGLSSTD AEQLKIFLDR ENSBTAP00000028452/1-896 ELHNNIKNVI VRSYGEKVNH LHLTFQNNSF FFMEKISSKD VKTLKAFLDG ENSTTRP00000012963/1-904 QLSNNIEDID LRPSGEDQNY LHLRLQTNDL LIIEKLSSGD AENLKKFLDR bmy_03712T0/1-928 QLSNNIKNIV LRPYGEDQNY LHLTFQTNDL LFIERLSSRD AKKLKMFLNR BACU005442/1-887 QLSNNIKNIV LRPYGEDQNY LHLTFQTNDL LFIERLSSRD AQNLKMFLNR 101 150 ENSP00000423390/1-913 VHQNEVQPPV RPGKGGSVFS STT-QKEINK TSFHKVDEKS SSKSFEIAKG ENSBTAP00000028452/1-896 VCQNHLPPSI RPDVDSSASA STTVQKIVDE TSFQKVGKKS NSQSSEKEEK ENSTTRP00000012963/1-904 VHPQ---PPV RPDRDGSIFA STTTQKAGGK TASHKIRRTS SSQSFEKER- bmy_03712T0/1-928 FHQNHLQPPV RPDRDGSIFA STTIEKVGEG TSFYKTCDTS SSQAFEKER- BACU005442/1-887 FHQNHLQPPV RPDRDGSIFA STTIEKVGEG TSF---CNTS SSQPFEKEI- 151 200 ENSP00000423390/1-913 SGTGVLQRMP LLTSK-LTLT CGELSENQHK KRKRMLSSSS EMNEEFLKEN ENSBTAP00000028452/1-896 NGT------P SSASESLTST YEQLLEDEYG KRNKK----- -LSWDFQNES ENSTTRP00000012963/1-904 NETPDDKEMP LCASELPTFT CEELLEKEYG KRR--PSSGS EMNKIFLQED bmy_03712T0/1-928 NETPDDKKMP LFASESSTFT CEELLENGYG KRKRKPSSGS EMNKNFLQEN BACU005442/1-887 NETPDDMKMA LFASESLRFT CEGLLENRYG KRKRKPSSGS ELNKNFLQEN 201 250 ENSP00000423390/1-913 NSVEYKKSKA DCSRCVSYNR EKQLKLKELE ENKKLECESS CIMNATGNP- ENSBTAP00000028452/1-896 SSVKKRKSKR HLLRIVSHSE KKELRIKGLK QS-KLDLDFL FKISP----- ENSTTRP00000012963/1-904 TCSEGTVSKM YPLRYVSLK- QRELILKGLK QNKEFELGPS FKIDFSGKH- bmy_03712T0/1-928 TSVRRKKSKL NPLRYVSHNK KKKLRLKRSK RNNKLKLGPS FKIDSTGNS- BACU005442/1-887 TFVRRKKSKM NTLRYVSHN- KKNLRLK--- RNNKLKLGPS FKIDSTGNSY 251 300 ENSP00000423390/1-913 YLDDIGLLQA LTEKMVLVFL LQQGYSDGYT KWDKLKLFFE LFPEKICHGL ENSBTAP00000028452/1-896 YLHGTNLVPK LSENIYFTFL SEAEYDKDDP YWDRLKLTLD YYPEKLWQGF ENSTTRP00000012963/1-904 YLDVSDLLQR VSEKIYLAFL SELKYGEDDP EWGKLQMIFD FYSEKLYQGF bmy_03712T0/1-928 YLDVTDLLQR LSEKIYLAFL SGSEYGENDP EWSKLNMIFD FYPQKLWQGL BACU005442/1-887 YLDVTDLLQR LSEKIYLAFL LGSGYGESDP DWHKLSMIFE FYPQKLWQGL 301 350 ENSP00000423390/1-913 PNLGNTCYMN AVLQSLLSIP SFADDLLNQS FPWGKIPLNA LTMCLARLLF ENSBTAP00000028452/1-896 PNLGNTCYMN AVLQSLFLIP SFGDDLLNRS YPWCKIPPDA LSMCLAQMFV ENSTTRP00000012963/1-904 PNLGNTCYMN AVLQSLLSIP SFANDLLNQD FLQGETPLDA LSIRLVQLLV bmy_03712T0/1-928 PNLGNTCYMN AVLQSLFSIP SFADDLLKLG FSWGKIPLDA LSVCLVRLLV BACU005442/1-887 PNLGNSCYMN SVLQSLFSVP SFADDLLKLG FSRDKIPLDA LSICLVRLLV 351 400 ENSP00000423390/1-913 FKDTYNIEIK EMLLLNLKKA ISAAAEIFHG NAQNDAHEFL AHCLDQLKDN ENSBTAP00000028452/1-896 LKDIYNINIK KRLLVNIKKT ISAVAEIFAN NRQNDAHEFL GHYLSQMKEN ENSTTRP00000012963/1-904 LKDIYNIKIK EKLLVNFKNT ISAVAEIFSD NAQNDAYEFL GHCLDQIKQN bmy_03712T0/1-928 LKDTYNIKIK EELLVNIKKA ISAVAEIFSD NMQNDAHEFL GHCLDQMKQN BACU005442/1-887 LKDTYNIKIK EELLVNIKKA ISAVAEIFSD DMENDAHEFL GHCLDQVKQN 401 450 ENSP00000423390/1-913 MEKLNTIWKP KSEFGEDNFP KQVFADDPDT SGFSCPVITN FELELLHSIA ENSBTAP00000028452/1-896 MEKLNTLGKT KIESKEERSP QPFFAGSAAK QALLCPVITN FEFELLCSIT ENSTTRP00000012963/1-904 MRKLNTIRKI KIESEEGNSP QQVSAGSADT KVLVCPVASN FDFELLRSTS bmy_03712T0/1-928 VGKLTATWET KIESEEGNSP QQISAGSADT RALVCPVLRN FDFELLHSII BACU005442/1-887 VGKLTTIGKT KIECEEGNSP QQVSAGSADT KGLVCPVRNN FDFELLHSII 451 500 ENSP00000423390/1-913 CKACGQVILK TELNNYLSIN LPQRIKAHPS SIQSTFDLFF GAEELEYKCA ENSBTAP00000028452/1-896 CKGCGHTVLK TEVNNYLSIN PPQGQQALPF SIQSSLDLFF GTENLEYTCE ENSTTRP00000012963/1-904 CKSCGQIVLK AEANNSLSVS LPQREKARPL SIQSSFDLFF EAEELEYKCE bmy_03712T0/1-928 CKACGHVVLK TEVNDSLSVN LPQGKQALPL SIQSSFDLFF EGEELEYKCE BACU005442/1-887 CKACGHVVRK TEVSDSLSVN LPQGKQALPL SVQCSFDLFF EGEELEYKCE 501 550 ENSP00000423390/1-913 KCEHKTSVGV HSFSRLPRIL IVHLKRYSLN EFCALKKNDQ EVIISKYLKV ENSBTAP00000028452/1-896 QCKHKKSHIK YTFSRLPRVL IVHLKRYNFI QFRSLKKDDQ EVIISKNLKI ENSTTRP00000012963/1-904 TCKHRSSVAV HKFSRLPRVL IVHLKRYKFS ESGSLRKDDQ KVIISKYLKL bmy_03712T0/1-928 KCKHRSSIAV HTFSRLPRVL IVHLKRYKFN EFWSLRKDDQ EVIISKYLKL BACU005442/1-887 KCNHRSSIAV HKFSRLPRVL IVHLKRYKFN EFWSLKKDDR TVVINKYLKL 551 600 ENSP00000423390/1-913 SSHCNEGTRP PLPLSEDGEI TDFQLLKVIR KMTSGNISVS WPATK---ES ENSBTAP00000028452/1-896 SSYCNENTRP PFPLNKKAHL MNLKVLKIFR NINSEAISKL TPSAKMALEF ENSTTRP00000012963/1-904 SSHCNETTKP PLPLSKNAPL TDFQVLELFK KMNSEAISSS TASTKQTSES bmy_03712T0/1-928 SSHCNETTKP PLPLSKNAPL RDFQVLKVFQ KMNSETISSL TASTKQTSES BACU005442/1-887 SSHCNETTKP PLPLSKNAPL RASRVFKVFQ KMNSETISSL TASTKQTSES 601 650 ENSP00000423390/1-913 KDILAPHIGS DKESEQKKGQ TVFKGASRRQ QQKYLGKNSK PNELES--VY ENSBTAP00000028452/1-896 MNSLPSHIVP DEEPEPQKDH VHHEDSREEE KQKDLGKCSV LEILDSALAN ENSTTRP00000012963/1-904 KDSLTPHIRS EKESEPQTCQ TLHKASSFKQ EQGDLGEDSK LNIIESTLVN bmy_03712T0/1-928 KDSLAPHIRS DKESEPQKCQ TLRKGSRGVQ QQKDLGKYSK LNIIESTLVN BACU005442/1-887 KDSLAPHIRS DKESEPQKRQ TLHKGSRGVR QQKDLGKYSK LNIIESTLAN 651 700 ENSP00000423390/1-913 SGDRAFIEKE PLA-HLMTYL EDTSLCQFHK AGGKPA-SSP GTPLSKVDFQ ENSBTAP00000028452/1-896 SQDGIIVARE LLAVALMMNM EDGSFS---- LREITV-SDP DV------CQ ENSTTRP00000012963/1-904 LRHRAAIARE LLAVGLMRNL EDSSLS---- LKGTPT-SSP DT------YH bmy_03712T0/1-928 TGHGAAIARE LLAVGLMMNL EDSSLS---- LKGIPT-SSP DT------CH BACU005442/1-887 TGHGAAIARE LLAVGLMMNL EDSSLS---- LKGLPTSSSP DT------CH 701 750 ENSP00000423390/1-913 TVPENPKRKK YVKTSKFVAF DRIINPTKDL YEDKNIRIPE RFQKVSEQTQ ENSBTAP00000028452/1-896 RVFENPKLKD DERMSMFADF DAVAKTTED- -KDENAKISE VSS-VAEQTP ENSTTRP00000012963/1-904 KVAKSRKGNK YKRTNISADF ESMPETTEEF CKGKKPRISE ESYQVPEETQ bmy_03712T0/1-928 KVPENPKLKK YKRTNMSADF ESVAETTEEF CKDKKNRISE KSCQVPEDTQ BACU005442/1-887 KVPENPKLKK YKGTNMSADF ESVAETTEEF CKDKKNRIAE ESCQVPQDTQ 751 800 ENSP00000423390/1-913 QCDGMRICEQ APQQALPQSF PKPGTQ--GH TKNLLRPTKL NLQKSNRNSL ENSBTAP00000028452/1-896 DKERMKTYEQ ALWLALLQSI PKTKTQKKKC TEKLKRPKES GVRGTKVKSP ENSTTRP00000012963/1-904 QCGGIRLFEQ DLGILLIRSL SGPDAQ--WH TDKC-RPTQL NFQGTKVSSR bmy_03712T0/1-928 PYETMRLCEQ DLWLALLRRL PKPDTQ--WY TEKCRRPTEL SFQGAKVNSL BACU005442/1-887 PYEGMRLCEQ DLWLALLRRL PKPDTQ--WY TEKCRRPTEL SFQGAKVNSL 801 850 ENSP00000423390/1-913 LALGSNKNPR NKDILD--KI KSKAKETKRN DDKGD-HTYR LISVVSHLGK ENSBTAP00000028452/1-896 GASGRNKKPG KKGSLRTEKT EAASNEPKGE AEMEDRQAYR LIGVLSHLGK ENSTTRP00000012963/1-904 GVLGSNKYSG RKGSSDVAKT KSSARKPKIE AEMRESHDYR LIGIISHIGK bmy_03712T0/1-928 GALGSNEDPG NKGSSDVEKI EAAAKIPKRE AKMGDSHDYR LIGVISHLGK BACU005442/1-887 GALGSNVDPG NKGSSDVEQV D----IPKRE AKMGDSHDYR LIGVISHLGK 851 900 ENSP00000423390/1-913 TLKSGHYICD AYDFEKQIWF TYDDMRVLGI QEAQMQEDRR CTGYIFFYMH ENSBTAP00000028452/1-896 SLNSGHYICD AYDFVRQEWF TYNDLQVSNI EEATMQKARL SSGYVFFYMH ENSTTRP00000012963/1-904 TPNTGHYVSD AYNFDRQVWF SYSDLNVSST QETPVQEARL QTGYVFFYMH bmy_03712T0/1-928 RYSSGHYISD AYNFERQEWF TYSDLQVSSI QEAPMQEARL CTGYIFFYMH BACU005442/1-887 RGVSGHYISD AYNFERREWL TYNDLQVSSI QEAPMQKARL CTGYIFFYMH 901 950 ENSP00000423390/1-913 NEIFEEMLKR EENAQLNSKE VEETLQKE-- ---------- --- ENSBTAP00000028452/1-896 NEIFEELLER E-SSPPSSTE AGKTSQEQE- ---------- --- ENSTTRP00000012963/1-904 NEIFEELLGK KENSQPHSTK EAETQK---- ---------- --- bmy_03712T0/1-928 NEIFEELLGR EENSQPHSTE AGVVKEVDSG VVKEVDSWSD SSS BACU005442/1-887 NEIFEELLGR E--------- ---------- ---------- ---