KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:06 2014 Check: 00 .. Name: ENSTTRP00000011097/1-1542 Len: 1560 Check: 4609 Weight: 1.00 Name: bmy_13950T0/1-1298 Len: 1560 Check: 5948 Weight: 1.00 Name: BACU017354/1-1403 Len: 1560 Check: 62 Weight: 1.00 Name: ENSP00000380942/1-1544 Len: 1560 Check: 8577 Weight: 1.00 Name: ENSBTAP00000028453/1-1544 Len: 1560 Check: 6107 Weight: 1.00 // 1 50 ENSTTRP00000011097/1-1542 MSGTQSTITD RFPLKKPIRH GSILNRESPT DKKQKVERST SHDFDPTDSS bmy_13950T0/1-1298 MSGTQSTITD RFPLKKPIRH GSILNRESPT DKKQRVERST SHDFDPTDSS BACU017354/1-1403 --FFLFFLCF RFPLKKPIRH GSILNRESPT DKKQKVERST SHDFDPTDSS ENSP00000380942/1-1544 MSGTQSTITD RFPLKKPIRH GSILNRESPT DKKQKVERIA SHDFDPTDSS ENSBTAP00000028453/1-1544 MSGTQSTITD RFPLKKPIRH GSILNRESPT DKKQKVERST SHDFDPTDSS 51 100 ENSTTRP00000011097/1-1542 SKKTKSSSEE SRSEIYGLVQ RCVIIQKDDN GFGLTVSGDN PVFVQSVKE- bmy_13950T0/1-1298 SKKTKSSSEE SRSEIYGLVQ RCVIIQKDDN GFGLTM--EQ P--------- BACU017354/1-1403 SKKTKSSSEE SRSEIYGLVQ RCVIIQKDDN GFGLTVSGDN PVFVQSVKEG ENSP00000380942/1-1544 SKKTKSSSEE SRSEIYGLVQ RCVIIQKDDN GFGLTVSGDN PVFVQSVKE- ENSBTAP00000028453/1-1544 SKKTKSSSEE SRSEIYGLVQ RCVIIQKDDN GFGLTVSGDN PVFVQSVKE- 101 150 ENSTTRP00000011097/1-1542 ---------- ----XXXXXR AGVQTGDRII KVNGTLVTHS NHLEVVKLIK bmy_13950T0/1-1298 ---------- ----CGLVYR QVIESSRK-- ---------- ------RQLQ BACU017354/1-1403 KAFLKTVLSL GSKQNGAAMR AGVQTGDRII KVNGTLVTHS NHLEVVKLIK ENSP00000380942/1-1544 ---------- ----DGAAMR AGVQTGDRII KVNGTLVTHS NHLEVVKLIK ENSBTAP00000028453/1-1544 ---------- ----DGAAMR AGVQTGDRII KVNGTLVTHS NHLEVVKLIK 151 200 ENSTTRP00000011097/1-1542 SGSYVALTVQ GRPPGSPQFP LADSEVEPSV VGHMSPIMTS PHSPGASGNM bmy_13950T0/1-1298 AGSYVALTVQ GRPPGSPQFP LADSEVEPSV VGHMSPIMTS PHSPGASGNM BACU017354/1-1403 SGSYVALTVQ GRPPGSPQFP LADSEVEPSV VGHMSPIMTS PHSPGASGNM ENSP00000380942/1-1544 SGSYVALTVQ GRPPGSPQIP LADSEVEPSV IGHMSPIMTS PHSPGASGNM ENSBTAP00000028453/1-1544 SGSYVALTVQ GRPPGSPQIP LADSEVEPSV TGHMSPIMTS PHSPGASGNM 201 250 ENSTTRP00000011097/1-1542 ERITSPVLMG EENNVVHNQK VEILRKMLQK EQERLQLLQE DYSRTPAQRL bmy_13950T0/1-1298 ERITSPVLMG EENNVVHNQK VEILRKMLQK EQERLQLLQE DYSRTPAQRL BACU017354/1-1403 ERITSPVLMG EENNVVHNQK VEILRKMLQK EQERLQLLQE DYSRTPAQRL ENSP00000380942/1-1544 ERITSPVLMG EENNVVHNQK VEILRKMLQK EQERLQLLQE DYNRTPAQRL ENSBTAP00000028453/1-1544 ERITSPVLMG EENNVVHNQK VEILRKMLQK EQERLQLLQE DYNRTPAQRL 251 300 ENSTTRP00000011097/1-1542 LKEIQEAKKH IPQLQEQLSK ATGSAQDGAA VTSSKPLGDG LAVSEIEADP bmy_13950T0/1-1298 LKEIQEAKKH IPQLQEQLSK ATGSAQDGAA VTSSKPLGDG LAVSEIEADP BACU017354/1-1403 LKEIQEAKKH IPQLQEQLSK ATGSAQDGAA VTSSKPLGDG LAVSEIEADP ENSP00000380942/1-1544 LKEIQEAKKH IPQLQEQLSK ATGSAQDGAV VTPSRPLGDT LTVSEAETDP ENSBTAP00000028453/1-1544 LKEIQEAKKH IPQLQEQLSK ATGSAQDGAV VTSSKPLADG LAVGEGEADP 301 350 ENSTTRP00000011097/1-1542 GDGLGRIDYG SGDASRPSSE SADSPKSGLK ERIYLEENPE KSEVIQDTDT bmy_13950T0/1-1298 GDGLGRTDYG SGDASRPSSD SADSPKSGLK ERIYLEENPE KSEVIQDTDT BACU017354/1-1403 GDGLGRTDYG SGDASRLSSD SADSPKSGLK ERIYLEENPE KSEVIQDTDT ENSP00000380942/1-1544 GDVLGRTDCS SGDASRPSSD NADSPKSGPK ERIYLEENPE KSETIQDTDT ENSBTAP00000028453/1-1544 GDGLGRLDCG SGDASRPGSD SADSPKSGLK ERIYLEENPE KSEAIQDTDT 351 400 ENSTTRP00000011097/1-1542 QSLIGSPSTR IAPHIIGAED DDFGTEHEQX XXXXXXXXXX XXXXXXXXXX bmy_13950T0/1-1298 QSLIGSPSTR IAPHIIGAED DDFGTEHEQI NGQCSCFQSI ELLKSRPAHL BACU017354/1-1403 QSLIGSPSTR IAPHIIGAED DDFGTEHEQL ---------- ---------- ENSP00000380942/1-1544 QSLVGSPSTR IAPHIIGAED DDFGTEHEQI NGQCSCFQSI ELLKSRPAHL ENSBTAP00000028453/1-1544 QSLVGSPSTR VAPHIIGAED DDFGSEHEQI NGQCSCFQSI ELLKSRPAHL 401 450 ENSTTRP00000011097/1-1542 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXH bmy_13950T0/1-1298 AVFLHHVVSQ FDPATLLCYL YSDLYKQTNS KETRRVFLEF HQFFLDRSAH BACU017354/1-1403 ---------- -------CYL YSDLYKQTNS KETRRVFLEF HQFFLDRSAH ENSP00000380942/1-1544 AVFLHHVVSQ FDPATLLCYL YSDLYKHTNS KETRRIFLEF HQFFLDRSAH ENSBTAP00000028453/1-1544 AVFLHHVVSQ FDPATLLCYL YSDLYKQTNS KETRRVFLEF HQFFLDRSAH 451 500 ENSTTRP00000011097/1-1542 LKVSVPDEIS VDLEKRRPEL IPEDLHRHYI QTMQERVHPE VQRHLEDFRQ bmy_13950T0/1-1298 LKVSVPDEIS VDLEKRRPEL IPEDLHRHYI QTMQERVHPE VQRHLEDFRQ BACU017354/1-1403 LKVSVPDEIS VDLEKRRPEL IPEDLHRHYI QTMQERVHPE VQRHLEDFRQ ENSP00000380942/1-1544 LKVSVPDEMS ADLEKRRPEL IPEDLHRHYI QTMQERVHPE VQRHLEDFRQ ENSBTAP00000028453/1-1544 LKVSVPEEIS VDLEKRRPEL IPEDLHRHYI QTMQERVHPE VQRHLEDFRQ 501 550 ENSTTRP00000011097/1-1542 KRSMGLTLAE SELTKIDAER DKDRVTLEKE RACAEQIVAK IEEVLMTAQA bmy_13950T0/1-1298 KRSMGLTLAE SELTKIDAER DKDRVTLEKE RACAEQIVAK IEEVLMTAQA BACU017354/1-1403 KRSMGLTLAE SELTKIDAER DKDRVTLEKE RACAEQIVAK IEEVLMTAQA ENSP00000380942/1-1544 KRSMGLTLAE SELTKLDAER DKDRLTLEKE RTCAEQIVAK IEEVLMTAQA ENSBTAP00000028453/1-1544 KRSMGLTLAE SELTKLDVER DKDRLTLEKE RACAEQIVAK IEEVLMTAQA 551 600 ENSTTRP00000011097/1-1542 VEEDKSSTMQ YVILMYMKHL GVKVKEPRNL EHKRGRIGFL PKIKXXXXXX bmy_13950T0/1-1298 VEEDKSSTMQ YVILMYMKHL GVKVKEPRNL EHKRGRIGFL PKIKAYWRVS BACU017354/1-1403 VEEDKSSTMQ YVILMYMKHL GVKVKEPRNL EHKRGRIGFL PKIKAYWRVS ENSP00000380942/1-1544 VEEDKSSTMQ YVILMYMKHL GVKVKEPRNL EHKRGRIGFL PKIKQSMKKD ENSBTAP00000028453/1-1544 VEEEKSSTMQ YVILMYMKHL GVKVKEPRNL EHKRGRIGFL PKIKQSMKKD 601 650 ENSTTRP00000011097/1-1542 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GRAMELQKQR HPKHISTPSS bmy_13950T0/1-1298 LLERAAGEVG VGVLLWGEKL AHIVAFKVTV GRAMELQKQR HPKHISTPSS BACU017354/1-1403 LLERAA---- ---------- ---------- ---------- ---------- ENSP00000380942/1-1544 KEGEEKGKRR GFPSILGPPR RPSRHDNSAI GRAMELQKAR HPKHLSTPSS ENSBTAP00000028453/1-1544 REGEEKGKRR GFTSILGPPR RPSRHDNSAI GRAMELQKQR HPKHLSTPSS 651 700 ENSTTRP00000011097/1-1542 VSPEPQDSAK LRQSGLTSEG VDTGYLPANS MSSMVSGATL SQEGGKENDM bmy_13950T0/1-1298 VSPEPQDSAK LRQSGLASEG ADIGYLPANS MSSVVSGATL SQEGGKENDM BACU017354/1-1403 ---------- ----GEVGVG V---LLWGEK LAHIVAFKV- ---------T ENSP00000380942/1-1544 VSPEPQDSAK LRQSGLANEG TDAGYLPANS MSSVASGASF SQEGGKENDT ENSBTAP00000028453/1-1544 VSPEPQDSAK LRQSGSASEG ADTGYLPANS TSSMVAGATL SQEGGKENDM 701 750 ENSTTRP00000011097/1-1542 GSKQVGETPA SGDSLDGTPR TPSTIFDFPP PPLDQVQEEE WEVERVTEHG bmy_13950T0/1-1298 GSKQVGETPA SGDSLDGTPR TPSTIFDFPP PPLDQVQEEE WEVERVTEHG BACU017354/1-1403 GSKQVGETPA SGDSLDGTPR TPSTIFDFPP PPLDQVQEEE WEVERVTEHG ENSP00000380942/1-1544 GSKQVGETSA PGDTLDGTPR TLNTVFDFPP PPLDQVQEEE CEVERVTEHG ENSBTAP00000028453/1-1544 GSKQAGETPA SGDSLDGTPR TPNTIFDFPP PPLDQVQEEE WEVERVTEHG 751 800 ENSTTRP00000011097/1-1542 TPKPFRKFDS IAFGESQSED EQFENDLETD PPNWQQLVSR EVLLALKPCE bmy_13950T0/1-1298 TPKPFRKFDS IAFGESQSED EQFENDLETD PPNWQQLVSR EVLLALKPCE BACU017354/1-1403 TPKPFRKFDS IAFGESQSED EQFENDLETD PPNWQQLVSR EVLLALKPCE ENSP00000380942/1-1544 TPKPFRKFDS VAFGESQSED EQFENDLETD PPNWQQLVSR EVLLGLKPCE ENSBTAP00000028453/1-1544 TPKPFRKFDS IAFGESQSED EQFENDLETD PPNWQQLVSR EVLLGLKPCE 801 850 ENSTTRP00000011097/1-1542 IKRQEVINEL FYTERAHVRT LKVLDQVFYQ RVSREGILSP SELRKIFSNL bmy_13950T0/1-1298 IKRQEVINEL FYTERAHVRT LKVLDQVFYQ RVSREGILSP SELRKIFSNL BACU017354/1-1403 IKRQEVINEL FYTERAHVRT LKVLDQVFYQ RVSREGILSP SELRKIFSNL ENSP00000380942/1-1544 IKRQEVINEL FYTERAHVRT LKVLDQVFYQ RVSREGILSP SELRKIFSNL ENSBTAP00000028453/1-1544 IKRQEVINEL FYTERAHVRT LKVLDQVFYQ RVSREGILSP SELRKIFSNL 851 900 ENSTTRP00000011097/1-1542 EDILQLHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFSGP GEEKL-HAAA bmy_13950T0/1-1298 EDILQLHIGL NEQMKAVRKR NETSVIDQIG EDLLTWFSGP GEEKLKHAAA BACU017354/1-1403 EDILQLHIGL NEQMKAVRKR NETSVIDQIG EDLLTWFSGP GEEKLKHAAA ENSP00000380942/1-1544 EDILQLHIGL NEQMKAVRKR NETSVIDQIG EDLLTWFSGP GEEKLKHAAA ENSBTAP00000028453/1-1544 EDILQLHIGL NEQMKAIRKR NETSVIDQIG EDLLIWFSGP GEEKLKHAAA 901 950 ENSTTRP00000011097/1-1542 TFCSNQPFAL QMIKSRQ-KD SRFQTFV-DA ESNPLCRRLQ LKDIIPTQMQ bmy_13950T0/1-1298 TFCSNQPFAL EMIKSRQKKD SRFQTFVQDA ESNPLCRRLQ LKDIIPTQMQ BACU017354/1-1403 TFCSNQPFAL EMIKSRQKKD SRFQTFVQDA ESNPLCRRLQ LKDIIPTQMQ ENSP00000380942/1-1544 TFCSNQPFAL EMIKSRQKKD SRFQTFVQDA ESNPLCRRLQ LKDIIPTQMQ ENSBTAP00000028453/1-1544 TFCSNQPFAL EMIKSRQKKD SRFQTFVQDA ESNPLCRRLQ LKDIIPTQMQ 951 1000 ENSTTRP00000011097/1-1542 RLTKYPLLLD NIAKYTXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13950T0/1-1298 RLTKYPLLLD NXAKYTEWPT EREKVKKAAD HCRQILNYVN QAVKEAENKQ BACU017354/1-1403 RLTKYPLLLD NIAKYTEWPT EREKVKKAAD HCRQILNYVN QAVKEAENKQ ENSP00000380942/1-1544 RLTKYPLLLD NIAKYTEWPT EREKVKKAAD HCRQILNYVN QAVKEAENKQ ENSBTAP00000028453/1-1544 RLTKYPLLLD NIAKYTEWPT EREKVKKAAD HCRQILNYVN QAVKEAENKQ 1001 1050 ENSTTRP00000011097/1-1542 RLEDYQRRLD TSNLKLSEYP NVEELRNLDL TKRKMIHEGP LVWKVNRDKT bmy_13950T0/1-1298 ---------- ---------- ------NLDL TKRKMIHEGP LVWKVNRDKT BACU017354/1-1403 RLEDYQRRLD TSNLKLSEYP NVEELRNLDL TKRKMIHEGP LVWKVNRDKT ENSP00000380942/1-1544 RLEDYQRRLD TSSLKLSEYP NVEELRNLDL TKRKMIHEGP LVWKVNRDKT ENSBTAP00000028453/1-1544 RLEDYQRRLD TSNLKLSEYP NVEELRNLDL TKRKMIHEGP LVWKVNRDKT 1051 1100 ENSTTRP00000011097/1-1542 IDLYTLLLED ILVLLQKQDD RLVLRCHSKI LASTGDSKHT FSPVIKLNTV bmy_13950T0/1-1298 IG-------- ---CLESLNN FLHLKIFCIL L--------- ----LSLRHV BACU017354/1-1403 IDLYTLLLED ILVLLQKQDD RLVLRCHSKI LASTGDSKHT FSPVIKLNTV ENSP00000380942/1-1544 IDLYTLLLED ILVLLQKQDD RLVLRCHSKI LASTADSKHT FSPVIKLSTV ENSBTAP00000028453/1-1544 IDLYTLLLED ILVLLQKQDD RLVLRCHSKI LASTADSKHT FSPVIKLNTV 1101 1150 ENSTTRP00000011097/1-1542 LVRQVATDNK ALFVISMSDN GAQIYELVAQ TVSEKTVWQD LICRMAASVK bmy_13950T0/1-1298 ZIIDXTSED- ---------- ---------- ---------- ---------- BACU017354/1-1403 LVRQVATGD- ---------- ---------- -------WQD LICRMAASVK ENSP00000380942/1-1544 LVRQVATDNK ALFVISMSDN GAQIYELVAQ TVSEKTVWQD LICRMAASVK ENSBTAP00000028453/1-1544 LVRQVATDNK ALFVISMSDN GAQIYELVAQ TVSEKTVWQD LICRMAASVK 1151 1200 ENSTTRP00000011097/1-1542 EQSTKPIPLP QSPPCEGDND EEEPPKLKVE HHGISVSGLQ SPDRDLGLES bmy_13950T0/1-1298 ----NELELA GPHLSDGCIS EGA---VHKA NSTATVTTLR V-NRDLGLES BACU017354/1-1403 EQSTKPIPLP QSPPCEGDND EEEPPKLKVE HHGISVTGLQ SPDRDLGLES ENSP00000380942/1-1544 EQSTKPIPLP QSTPGEGDND EEDPSKLKEE QHGISVTGLQ SPDRDLGLES ENSBTAP00000028453/1-1544 EQSTKPIPLP QPPPCEGDND EEEPPKLKVE HHDISVTGLQ SPDRDLGLES 1201 1250 ENSTTRP00000011097/1-1542 PLMSSKPQSH SLDTSGKSEV DDDLFVADRQ FAKEQHADGT LKEVGVNYQI bmy_13950T0/1-1298 PLMSSKPQSH SLDTSGKSEV -DDLFVAERQ FAKEQHADGT VKEVGVNYQI BACU017354/1-1403 PLMSSKPQSH SLDTSGKSEV -DDLFVAERQ FAKEQHADGT LKEVGVSYQI ENSP00000380942/1-1544 TLISSKPQSH SLSTSGKSEV -RDLFVAERQ FAKEQHTDGT LKEVGEDYQI ENSBTAP00000028453/1-1544 PLMSSKPQSH SLGTSGKSEV -DDLFVAERQ FAKEQHADGT LKEVGVNYQV 1251 1300 ENSTTRP00000011097/1-1542 TVPDPHLPVS EERWALDALR NLGLLKQLLV QQLGLTEKST QEDWPHFPRC bmy_13950T0/1-1298 TIPDPHLPVS EERWALDALR NLGLLKQLLV QQLGLTEKST QEDWPHFPRC BACU017354/1-1403 TIPDPHLPVS EERWALDALR NLGLLKQLLV QQLGLTEKSA QEDWPHFPRC ENSP00000380942/1-1544 AIPDSHLPVS EERWALDALR NLGLLKQLLV QQLGLTEKSV QEDWQHFPRY ENSBTAP00000028453/1-1544 TIPDPHLPGS EERWALDALR NLGLLKQLLV HQLGLTEKST QEDWPHFPRC 1301 1350 ENSTTRP00000011097/1-1542 RTASLGAQAD SGTQKPGNIK AYHPCEGQMP FRTGTGDIST CYSPRTSTES bmy_13950T0/1-1298 RTASLGVQAD SGTQNPENIK ACRPCEGQMP LRTGAGDXAA RYGARTSTEP BACU017354/1-1403 RTASLGVQAY GGTQNPENIK ACRPCEGQMP FRTGAGDISA RYGARTSTEP ENSP00000380942/1-1544 RTASQGPQTD SVIQNSENIK AYHSGEGHMP FRTGTGDIAT CYSPRTSTES ENSBTAP00000028453/1-1544 RTASLGVQAD SGTQNPENIK ACHPVEAQMP FRTGTGDIST CYSPRTSTES 1351 1400 ENSTTRP00000011097/1-1542 SAPRDSVVLA FQDSQASNIL VMDHMIMTPE MPPAEPEGGL DESGEHFFDA bmy_13950T0/1-1298 SAARDSVVLA FQDSQASSIL VMDRMILTPE MPPAEPEGGL DESGEHFFDA BACU017354/1-1403 SAARDSVVLA FQDSQASSIL VMDRMILTPE MPPAEPEGGL DESGEHFFDA ENSP00000380942/1-1544 FAPRDSVGLA PQDSQASNIL VMDHMIMTPE MPTMEPEGGL DDSGEHFFDA ENSBTAP00000028453/1-1544 SAPRDSVVLA FQESQASDIL IMDHMIMTPE MPPSEPEGGL DESGEHFFDA 1401 1450 ENSTTRP00000011097/1-1542 REAHSDDNPS EGDGAVKKEE KDVNLRISGT CLILDGYETV QESSTDEEIA bmy_13950T0/1-1298 REAHSDDNPS EGDGAVKKEE KDVNLRISGK FF-------- ---------- BACU017354/1-1403 REAHSDDNPS E--------- --------GT YLILDGYEAV QESSTDEEVA ENSP00000380942/1-1544 REAHSDENPS EGDGAVNKEE KDVNLRISGN YLILDGYDPV QESSTDEEVA ENSBTAP00000028453/1-1544 REAHSDDNPS EGDGAVKKEE KDVNLRISGT YLILDGYDPV QESSTDDEVA 1451 1500 ENSTTRP00000011097/1-1542 SSLPPQPATG IPSMDSTRRQ QRSPQNAHSD GAVSPFTPEF LVQQRWGAME bmy_13950T0/1-1298 ---------- ---------- ---------- ---------- ---------- BACU017354/1-1403 SSLPPQPTTG TPSMDSTRRQ QHSPQNAHSD GAVSPFTPEF LVQQRWGAME ENSP00000380942/1-1544 SSLTLQPMTG IPAVESTHQQ QHSPQNTHSD GAISPFTPEF LVQQRWGAME ENSBTAP00000028453/1-1544 SSFPLQPGAG IPSLDSGHQQ QPSPQNAHSD GAVSPFNPEL LVQQRWGAME 1501 1550 ENSTTRP00000011097/1-1542 DSCLEIRSPS SCADSQSQIM ECIRKIEADL EHLKKVEESY SILCQRLAGS bmy_13950T0/1-1298 ---------- ---------- ---SHLNFDF NH-------- ---------- BACU017354/1-1403 DSCFELRSPS SCADSQSQIM EYIRKIEADL EHLKKVEESY TILCQRLAGS ENSP00000380942/1-1544 YSCFEIQSPS SCADSQSQIM EYIHKIEADL EHLKKVEESY TILCQRLAGS ENSBTAP00000028453/1-1544 DSCFEIQSPS ACADSQSQIM EYIRKIEADL EHLKKVEESY TILCQRLAGS 1551 1600 ENSTTRP00000011097/1-1542 ALTDKHSDKS bmy_13950T0/1-1298 ---------- BACU017354/1-1403 ALTDKHSGT- ENSP00000380942/1-1544 ALTDKHSDKS ENSBTAP00000028453/1-1544 ALTDKHSDKS