KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:07 2014 Check: 00 .. Name: ENSTTRP00000011961/1-673 Len: 699 Check: 9200 Weight: 1.00 Name: BACU008754/1-417 Len: 699 Check: 7384 Weight: 1.00 Name: ENSP00000226432/1-699 Len: 699 Check: 14 Weight: 1.00 Name: bmy_10806T0/1-581 Len: 699 Check: 1955 Weight: 1.00 Name: ENSBTAP00000028457/1-699 Len: 699 Check: 1603 Weight: 1.00 // 1 50 ENSTTRP00000011961/1-673 MPSLWREVLL ESLLGYVSWS LGDGLGPMIY YFPLQTLELT GLEAFAIAFL BACU008754/1-417 ---------- ---LGYVSWS LCDGLGPMIY YFPLQTLELT GLEAFAIAFL ENSP00000226432/1-699 MPSLWREILL ESLLGCVSWS LYHDLGPMIY YFPLQTLELT GLEGFSIAFL bmy_10806T0/1-581 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028457/1-699 MTSPWREVLL ESLLGYVSWS LCHDLSPMIY YFPLQTLGLT GLEGFAIAFL 51 100 ENSTTRP00000011961/1-673 SPLFLTIPPV WKLVNKKWMV ALLWIITVGS IASFQAPNAK LQLVVLALGL BACU008754/1-417 SPLFLTITPV WKLVHKKWMV ALLRIVTV-- ---------- ---------- ENSP00000226432/1-699 SPIFLTITPF WKLVNKKWML TLLRIITIGS IASFQAPNAK LRLMVLALGV bmy_10806T0/1-581 ---------- ---------- ---------S IASFQAPNAK LRLVVLALGL ENSBTAP00000028457/1-699 SPLFLTITPV WNLVNKKWML ALLRIITVGS IASFQAPNAK LRLTVLALGL 101 150 ENSTTRP00000011961/1-673 SSSLVVQAVA WWTGSGLQRY FGIWGFILGQ ILLLVLHIWY TSLNPVWTYQ BACU008754/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000226432/1-699 SSSLIVQAVT WWSGSHLQRY LRIWGFILGQ IVLVVLRIWY TSLNPIWSYQ bmy_10806T0/1-581 SSSLVVQAVT WWTGSGLQRY FRIWGFILGQ ILLLVLRIWY TSLNPVWTYQ ENSBTAP00000028457/1-699 SSSLVVHAVT WWTGNGLQRY FRIWGFILGQ ILLLVLRIWY TSLNPVWTYQ 151 200 ENSTTRP00000011961/1-673 MSNRVILTLS TIATLDCIYT DGACCRPEGK KSEEAARVMA SRPNWLLAGA BACU008754/1-417 ---------- ---------- DGACCRPAGK KSG------- ---------- ENSP00000226432/1-699 MSNKVILTLS AIATLDRIGT DGDCSKPEEK KTGEVATGMA SRPNWLLAGA bmy_10806T0/1-581 MSKRVILTLS TIATLDRIYT DGACCRPEGK KSGEAARVMA SRPNWLLAGA ENSBTAP00000028457/1-699 MSNRVILTLS TIATLDRIYT DGACYKPQWK KNGEAAKAVA SGLNWLLAGA 201 250 ENSTTRP00000011961/1-673 AFGSLMFLTH WIFGEVSLVS RWAVSGHPHP GPDPNPFGGA VLLGLASGLM BACU008754/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000226432/1-699 AFGSLVFLTH WVFGEVSLVS RWAVSGHPHP GPDPNPFGGA VLLCLASGLM bmy_10806T0/1-581 AFGSLMFLTH WIFGEVSVVS RWAVSGHPHP GPDPNPFGSA VLLGLASGLM ENSBTAP00000028457/1-699 AFGSLMFLTH WIFGEVSLVS RWAVSGHPHP GPDPNPFGGV VLLGLASGLM 251 300 ENSTTRP00000011961/1-673 LSPCSWFPGS SLTWWMTGVT SAVGLLYLPT WAAALSGCVL ALFTASMWPQ BACU008754/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000226432/1-699 LPSCLWFRGT GLIWWVTGTA SAAGLLYLHT WAAAVSGCVF AIFTASMWPQ bmy_10806T0/1-581 LSPCSWFPGS SLTWWMTGAT SAVGLLYLPT WAAALSGCVL ALFTASMWPQ ENSBTAP00000028457/1-699 LSSCSWFPGS SLIWWITGAT SAAGLLYLPT WAAAVSGCVL ALFTASVWPQ 301 350 ENSTTRP00000011961/1-673 VLGHLISSGS GPGKAMTTAM IFHLLEIFFC ARCTAFKFVP GGVYARERSD BACU008754/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000226432/1-699 TLGHLINSGT NPGKTMTIAM IFYLLEIFFC AWCTAFKFVP GGVYARERSD bmy_10806T0/1-581 VLGHLISSGS GPGKAMTTAM IIYLLEIFFC AWYTAFKFVP GGVYARERSD ENSBTAP00000028457/1-699 VLGHLISSGS SPGKAMTTAM IFYILEVFFC AWCTAFKFVP GGVYARERSD 351 400 ENSTTRP00000011961/1-673 VLLVTVMLII GLNMLFGPKK SLDFHLQTKN SPKMLFRESG KYMKLVLWLL BACU008754/1-417 ----TVMLII GLNMLFGPKK SLDFHLQTKN SPKLLFRESG KYMKLFLWLL ENSP00000226432/1-699 VLLGTMMLII GLNMLFGPKK NLDLLLQTKN SSKVLFRKSE KYMKLFLWLL bmy_10806T0/1-581 VLLGTVMLII GLNMLFGPKK SLDFHLQTKN SPKMLFRE-- -----ILWLL ENSBTAP00000028457/1-699 VLLGTVMVII GLNMLLGQKK RVDFHFQTKN SPKVLFRESE KYVKLFLWLL 401 450 ENSTTRP00000011961/1-673 VSVKLLGLGL RHKTYEKKLG RGXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008754/1-417 VGVGLLGLGL RHKTYEKKLG RGAPATEVSA AIWPFRFGFD SEGWSNLERS ENSP00000226432/1-699 VGVGLLGLGL RHKAYERKLG KVAPTKEVSA AIWPFRFGYD NEGWSSLERS bmy_10806T0/1-581 ---------- ---------- --APATEVSA AIWPFRFGFD NEGWSNLERS ENSBTAP00000028457/1-699 VGVGLLGLGL RHKTYEKKLG KGAPATEVSA AIWPFRFGFD NDGWSSLERS 451 500 ENSTTRP00000011961/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008754/1-417 AQLLSQTGAD FITILESEAS KPYIGNNDLT MWLGKKLGFY TNFGPSARDH ENSP00000226432/1-699 AHLLNETGAD FITILESDAS KPYMGNNDLT MWLGEKLGFY TDFGPSTRYH bmy_10806T0/1-581 AQLLKQ---- ------SDAS KPYIGNNDLT TWLGEKLGFY TDFGPSARDH ENSBTAP00000028457/1-699 AQLLNQTGAD FITILESDAS KPYIGNNDLT MWLGEKLGFY TDFGPSARDH 501 550 ENSTTRP00000011961/1-673 XXXIMVLSRY RIVKSEHHLL PSPEGEIAPA ITLTVNISDK LVVFVVTHFG BACU008754/1-417 TWGIMVLSRY PIVKSEHRLL PSPEGEIAPA ITLTVNISDK LVDFVVTHFG ENSP00000226432/1-699 TWGIMALSRY PIVKSEHHLL PSPEGEIAPA ITLTVNISGK LVDFVVTHFG bmy_10806T0/1-581 TWGIMVLSRY RIVKSEHHLL PSPEGEIAPA ITLTVNISDK LVDFVVTHFG ENSBTAP00000028457/1-699 TWGIMVLSRY PIVKSEHHLL PSPEGEIAPA ITLTVNVSNK PVDFVVTHFG 551 600 ENSTTRP00000011961/1-673 NXXDDLDRKL QAIAVSKLLK NSSEQVIFLG YITSAPGSRD YLQLIERGNV BACU008754/1-417 NHEDDLDRKL QAIAVSKLLK NSSEQVIFLG YITSAPGSRD YLQLIERGNV ENSP00000226432/1-699 NHEDDLDRKL QAIAVSKLLK SSSNQVIFLG YITSAPGSRD YLQLTEHGNV bmy_10806T0/1-581 NHEDDLXRKL QAIAVSKLLK NSSEQVIFLG YITSAPGSRD YLQLIERGNV ENSBTAP00000028457/1-699 NHEDDLDRKL QAIAVSKLLK NSSEQVIFLG YITSAPGSRD YLQLIKHGNV 601 650 ENSTTRP00000011961/1-673 KDIDSTDQDR WCEYIMYRGL IKLGYARISH AELSDSEIQM AKFRIPDDPV BACU008754/1-417 KDIDSTDQDR WCEYIMYRGL IKLGYSRISH AELSHSEIQM AKFRIPDDPI ENSP00000226432/1-699 KDIDSTDHDR WCEYIMYRGL IRLGYARISH AELSDSEIQM AKFRIPDDPT bmy_10806T0/1-581 KDIDSTDQDR WXEYIMYXGL IKLGYARISH AELSDSEIQM AEFRIPDDPI ENSBTAP00000028457/1-699 KDIDSTDQDR WCEYIMYRGL IRLGYARISH AELSDSEIQV AKFRIPDDPI 651 700 ENSTTRP00000011961/1-673 NYRDNQKVVT DPREVPEKIH FNP------- ---------- --------- BACU008754/1-417 NYRDNQKVVT DPREVPEKIH FNPRFPMACD FASLNSNGKC HKN------ ENSP00000226432/1-699 NYRDNQKVVI DHREVSEKIH FNPRFGSYKE GHNYENNHHF HMNTPKYFL bmy_10806T0/1-581 NYRDNQKVAT DPREVPEKIH FNPRFGSYKE GHNFENNHHF HMSTPKYFL ENSBTAP00000028457/1-699 NYRDNQKVVT DHREVPEKIH FNPRFGSYKE GHNFENNHHF HMSTPKYFL