KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:08 2014 Check: 00 .. Name: ENSTTRP00000013683/1-462 Len: 638 Check: 7536 Weight: 1.00 Name: bmy_05381T0/1-278 Len: 638 Check: 7289 Weight: 1.00 Name: ENSP00000361180/1-526 Len: 638 Check: 9812 Weight: 1.00 Name: BACU016185/1-553 Len: 638 Check: 8656 Weight: 1.00 Name: ENSBTAP00000028493/1-524 Len: 638 Check: 2098 Weight: 1.00 // 1 50 ENSTTRP00000013683/1-462 ---------- ---------- ---------- ---------- ---------- bmy_05381T0/1-278 PHFKQEVEGR AVVYPEPRGL TSGVCSQRPS GLAELRDLDK RERGGSPERF ENSP00000361180/1-526 ---------- ---------- ---------- ---------- ---------- BACU016185/1-553 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028493/1-524 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013683/1-462 ---------- ---------- ------MAAA DWGPGVAVPV ELRRERHIVC bmy_05381T0/1-278 LRGTVRARPL GARGGTARGG PDETGRMAAA DGGPGVAVPV ELRRERHMVC ENSP00000361180/1-526 ---------- ---------- ----MAAEAA DLGLGAAVPV ELRRERRMVC BACU016185/1-553 ---------- ---------- ------MAAA DGGPGVAVPV ELRRERHMVC ENSBTAP00000028493/1-524 ---------- ---------- ----MAAAAA DARPGAAIPV ELRRERRMVC 101 150 ENSTTRP00000013683/1-462 VEYPGVVRDV SKMLQTLGGE EGVSRIYADP TKRLELYFRP KDPYCHPVCA bmy_05381T0/1-278 VEYPGVVRDV SKMLQTLGGE EGVSRIYADP TKRLELYFRP KDPYCHPVCA ENSP00000361180/1-526 VEYPGVVRDV AKMLPTLGGE EGVSRIYADP TKRLELYFRP KDPYCHPVCA BACU016185/1-553 VEYPGVVRDV SKVLQTLGGE EGVSRIYADP TKRLELYFRP KDPYCHPVCA ENSBTAP00000028493/1-524 VEYPGVVRDV SKMLRTLGGE EGVSRIYADA TKRLELYFRP KDPYCHPVCA 151 200 ENSTTRP00000013683/1-462 NRFSTSSLLL RIKRKMRRQR GAPGPEAHPK VTFDIESLGI VSTVYKFQXX bmy_05381T0/1-278 NRFSTSSLLL RIKRKTRRQR GAPGPEAHPK VTFDIESLGI VSTVYKFQDV ENSP00000361180/1-526 NRFSTSSLLL RIRKRTRRQK GVLGTEAHSE VTFDMEILGI ISTIYKFQGM BACU016185/1-553 NRFSTSSLLL RIKRKTRRQR GAPGPEAHPK VTFDIESLGI VSTVYKFQGM ENSBTAP00000028493/1-524 NRFSTNSLLL RIKRKTRRQS GVLGPEARPQ VTYDIESLGV ISTVFKFQGM 201 250 ENSTTRP00000013683/1-462 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05381T0/1-278 R----LPV-- -PGGAHGGGW QAHVHVQQG- ---------- ---------- ENSP00000361180/1-526 SDFQYLAVHT EAGGKHTSMY DKVLMLRPEK EAFFHQELPL YIPPPIFSRL BACU016185/1-553 SDFQYLAVHT EAGGRHMSMY SKVLMLKPEK ESFFHQELPL YIPPPIFSRL ENSBTAP00000028493/1-524 SDFQYLAVHT EADGRQVSMY DKVLMLKPQK ESFFHQDLPL YIPPPIFSRL 251 300 ENSTTRP00000013683/1-462 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05381T0/1-278 ---------P HAQAREGEFL PPGAA----- ---ALHP--- ---------- ENSP00000361180/1-526 DAPVDYFYRP ETQHREGYNN PPISGENLIG LSRARRPHNA IFVNFEDEEV BACU016185/1-553 DTPVDYSYRP ETQHREGYNN PSVSGENLIG LSRARRPHNA IFVNFEGDEA ENSBTAP00000028493/1-524 DTPVDYYYRP ETQHREGYNN PALSGENLIG LSRARRPHNA IFVNFEGDEV 301 350 ENSTTRP00000013683/1-462 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LFEIRPIWSR NAVKANISVH bmy_05381T0/1-278 PAHLLQAG-- ---------- ---------- ---------- ---------H ENSP00000361180/1-526 PKQPLEAAAQ TWRRVCTNPV DRKVEEELRK LFDIRPIWSR NAVKANISVH BACU016185/1-553 PEQPLEAAAQ TWRKVCTNPV DHKVEEDLRK LFEIRPIWSR NAVKANISVH ENSBTAP00000028493/1-524 PERPMEAAVQ TWKKVCTNPV DHKVEEELRK LFDIRPIWSR NALKANISVH 351 400 ENSTTRP00000013683/1-462 PDKLKVLLPF MAYYMITGPW RSLWIRFGYD PRKHPDAKIY QVLDFRIRCG bmy_05381T0/1-278 PGGL--LLP- ---------- ---------- PR-------- ---------- ENSP00000361180/1-526 PDKLKVLLPF IAYYMITGPW RSLWIRFGYD PRKNPDAKIY QVLDFRIRCG BACU016185/1-553 PDKLKVLLPF VAYYMITGPW RSLWIRFGYD PRKHPEAKIY QVLDFRIRCG ENSBTAP00000028493/1-524 PDKLKILLPF VAYYMITGPW RSLWIRFGYD PRKRPEAKIY QVLDFRIRCG 401 450 ENSTTRP00000013683/1-462 MKYGYAPSDM PVKAKRSTYN YSLPITVKKT SSQLVTMQDL KQGLGPSGSA bmy_05381T0/1-278 ---------- ---------- ---------- ---------- -------DTA ENSP00000361180/1-526 MKHGYAPSDL PVKAKRSTYN YSLPITVKKT SSQLVTMHDL KQGLGPSGTS BACU016185/1-553 MKYGYAPSDM PVKAKRSTYN YSLPITVKKT TSQLVTMRDL KQGLG--ASA ENSBTAP00000028493/1-524 MKYGYAPSDM PVKAKRSTYN YSLPITVKKT TSQLVTMRDL KQGLGPSGSA 451 500 ENSTTRP00000013683/1-462 SARKLASNKY KLK------- DSVYIFREGA LPPYRQMXXX XXXXXXXXLQ bmy_05381T0/1-278 PVRKATTT-- ---------- ---------- -PP------- ---------- ENSP00000361180/1-526 GARKPASSKY KLKVSLQTLR DSVYIFREGA LPPYRQMFYQ LCDLNVEELQ BACU016185/1-553 SARKLASNKY KLK------- DSVYIFREGA LPPYRQMFYQ FCDLNVDELQ ENSBTAP00000028493/1-524 SAQKSSPNKY KLKVGVRGLP DSVYIFQEGA LPPYRQMFYQ FCDLNVEELQ 501 550 ENSTTRP00000013683/1-462 KIIHRNDGAE SLCTERDGWC LPKTSDDLRD MMSLMIRHTI RSKRP----- bmy_05381T0/1-278 ---------- ---------- ---------- ---------- ---------- ENSP00000361180/1-526 KIIHRNDGAE NSCTERDGWC LPKTSDELRD TMSLMIRQTI RSKR------ BACU016185/1-553 KIIHRNDGAE SLCTERDGWC LPKTSDDLRD VMSVMIRHAI RSERPDRPPG ENSBTAP00000028493/1-524 RVIHRNDGAE SSCTERDGWC LPKTTDELRD TMSLMIRQTI RSKR------ 551 600 ENSTTRP00000013683/1-462 ---------- ---------- ---------- ---------- ---------- bmy_05381T0/1-278 ---------- ---------- ---------- ----SPGRT- ---------- ENSP00000361180/1-526 ---------- ---------- ---------P ALFSSSAKAD GGKEQLTYES BACU016185/1-553 AEGLWLRPAT AGVGAPRSQR RDTHGLSFGP ALFSSPAKAD GGKEQLTCES ENSBTAP00000028493/1-524 ---------- ---------- ---------P ALFSSPTKAD SGKEQLTGES 601 650 ENSTTRP00000013683/1-462 ---------- ---------- ---------- -------- bmy_05381T0/1-278 ---------- ---------- ---------- -------- ENSP00000361180/1-526 G---EDEEDE EEEEEEEEDF KPSDGSENEM ETEILDYV BACU016185/1-553 GDEEEDEDEE EEEEEEEEDF KPSDGSENEM ETEILDYV ENSBTAP00000028493/1-524 G-----EDEE EEDDEEEEEF KPSDGSENEM ETEILDYV