KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:09 2014 Check: 00 .. Name: ENSTTRP00000003374/1-507 Len: 541 Check: 9189 Weight: 1.00 Name: bmy_04860T0/1-535 Len: 541 Check: 3383 Weight: 1.00 Name: ENSP00000320309/1-508 Len: 541 Check: 9193 Weight: 1.00 Name: BACU003989/1-508 Len: 541 Check: 1818 Weight: 1.00 Name: ENSBTAP00000028494/1-508 Len: 541 Check: 1495 Weight: 1.00 // 1 50 ENSTTRP00000003374/1-507 MADGPVAEVL LQRLEAADGG LDSAELAAEL GVEHQTVVGA VKSLQALGEI bmy_04860T0/1-535 MADGPVAEVL LQRLEAADGG LDSAELAAEL GVEHQTVVGA VKSLQALGEI ENSP00000320309/1-508 MADGQVAELL LRRLEASDGG LDSAELAAEL GMEHQAVVGA VKSLQALGEV BACU003989/1-508 MADGPVAEVL LQRLEAADGG LDSAELAAEL GVEHQTVVGA VKSLQALGEI ENSBTAP00000028494/1-508 MADGPVAEVL LRRLEAADGG LDSAELATEL GVEHQTVVGA VKSLQALGQI 51 100 ENSTTRP00000003374/1-507 IEAELRSTKR WELTAEGEEI AREGSHEARV FRSVPPEGLP QSELMRLPSG bmy_04860T0/1-535 IEAELRSTKR WELTAEGEEI AREGSHEARV FRSVPPEGLP QSELMRLPSG ENSP00000320309/1-508 IEAELRSTKH WELTAEGEEI AREGSHEARV FRSIPPEGLA QSELMRLPSG BACU003989/1-508 IEAELRSTKR WELTAEGEEI AREGSHEARV FRSVPPEGLP QSELMRLPSG ENSBTAP00000028494/1-508 IETELRSTKR WELTAEGEEI AQEGSHEARV FRSIPPEGLP QSELMRLPSG 101 150 ENSTTRP00000003374/1-507 KVGFS-TMSN KWIRVYKSAA DGPRVFRVVD SVEDEVQRRL QLVQGGQAEK bmy_04860T0/1-535 KVGFSKAMSN KWIRVNKSAA DGPRVFRVVD SVEDEVQRRL QLVQGGQAEK ENSP00000320309/1-508 KVGFSKAMSN KWIRVDKSAA DGPRVFRVVD SMEDEVQRRL QLVRGGQAEK BACU003989/1-508 KVGFSKAMSN KWIRVDKSAA DGPRVFRVVD SVEDEVQRRL QLVQGGRAEK ENSBTAP00000028494/1-508 KVGFSKAMSN KWIRVDKSAA DGPRVFRVVD SVEDEVQRRL QLVRGGQAEK 151 200 ENSTTRP00000003374/1-507 LGEKERSELR KRKLLTEVNL KTYWVSKGSA FSTSISKQET ELSPEMISSG bmy_04860T0/1-535 LGEKERSELR KRKLLTEVTL KTYWVSKGSA FSTSISKQET ELSPEMISSG ENSP00000320309/1-508 LGEKERSELR KRKLLAEVTL KTYWVSKGSA FSTSISKQET ELSPEMISSG BACU003989/1-508 LGEKERSELR KRKLLTEVTL KTYWVSKGSA FSTSISKQET ELSPEMISSG ENSBTAP00000028494/1-508 LGEKERSELR KRKLLTEATL KTYWVSKGSA FSTSISKQET ELSPEMISSG 201 250 ENSTTRP00000003374/1-507 SWRDRPFKPY NFSAHGVLPD SGHLHPLLKV RTQFRQIFLE MGFTEMPTDN bmy_04860T0/1-535 SWQDRPFKPY NFSAHGVLPD SGHLHPLLKV RTQFRQIFLE MGFTEMPTDN ENSP00000320309/1-508 SWRDRPFKPY NFLAHGVLPD SGHLHPLLKV RSQFRQIFLE MGFTEMPTDN BACU003989/1-508 SWRDRPFKPY NFSAHGVLPD SGHLHPLLKV RTQFRQIFLE MGFTEMPTDN ENSBTAP00000028494/1-508 SWRDRPFKPY NFSAHGVLPD SGHLHPLLKV RSQFRQIFLE MGFTEMPTDN 251 300 ENSTTRP00000003374/1-507 YIESSFWNFD ALFQPQQHPA RDQHDTFFLR DPAQAQQL-- ---------- bmy_04860T0/1-535 YIESSFWNFD ALFQPQQHPA RDQHDTFFLR GPAAPNGLRP SRQADPLSGR ENSP00000320309/1-508 FIESSFWNFD ALFQPQQHPA RDQHDTFFLR DPAEALQL-- ---------- BACU003989/1-508 YIESSFWNFD ALFQPQQHPA RDQHDTFFLR DPAQAQQL-- ---------- ENSBTAP00000028494/1-508 YIESSFWNFD ALFQPQQHPA RDQHDTFFLR DPAQAQQL-- ---------- 301 350 ENSTTRP00000003374/1-507 ---------- --------PM DYVHRV---K RTHSQGGYGS QGYKYNWKLD bmy_04860T0/1-535 LRLTGVQVQL ETGRGSEKPA AHPHHVGQRP RPLPPGPEGV AGLGQRWRGQ ENSP00000320309/1-508 ---------- --------PM DYVQRV---K RTHSQGGYGS QGYKYNWKLD BACU003989/1-508 ---------- --------PM DYVHRV---K RTHSQGGYGS QGYKYNWKLD ENSBTAP00000028494/1-508 ---------- --------PM DYVHRV---K RTHSQGGYGS QGYKYTWKLD 351 400 ENSTTRP00000003374/1-507 EARKNLLRTH TTSASARALY RLAQKKPFTA AKYFSIDRVF RNETLDATHL bmy_04860T0/1-535 GCHPDLL-TH ARAWPASHL- ----QKPFTA AKYFSIDRVF RNETLDATHL ENSP00000320309/1-508 EARKNLLRTH TTSASARALY RLAQKKPFTP VKYFSIDRVF RNETLDATHL BACU003989/1-508 EARKNLLRTH TTSASARALY RLAQKKPFTA AKYFSIDRVF RNETLDATHL ENSBTAP00000028494/1-508 EARKNLLRTH TTAASARALY RLAQKKPFTP AKYFSIDRVF RNETLDATHL 401 450 ENSTTRP00000003374/1-507 AEFHQIEGVV ADHGLTLGHL MGVLREFFTK LXXXXXXXXX XXXXXXXXXX bmy_04860T0/1-535 AEFHQIEGVV ADHGLTLGHL MGVLQEFFTK LGITQLRFKP TYNPYTEPSM ENSP00000320309/1-508 AEFHQIEGVV ADHGLTLGHL MGVLREFFTK LGITQLRFKP AYNPYTEPSM BACU003989/1-508 AEFHQIEGVV ADHGLTLGHL MGVLREFFTK LGITQLRFKP TYNPYTEPSM ENSBTAP00000028494/1-508 AEFHQIEGVV ADHGLTLGHL MGVLREFFTK LGITQLRFKP AYNPYTEPSM 451 500 ENSTTRP00000003374/1-507 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXPTMI bmy_04860T0/1-535 EVFSYHQGLK KWVEVGNSGI FRPEMLLPMG LPENVSVIAW GLSLERPTMI ENSP00000320309/1-508 EVFSYHQGLK KWVEVGNSGV FRPEMLLPMG LPENVSVIAW GLSLERPTMI BACU003989/1-508 EVFSYHQGLK KWVEVGNSGI FRPEMLLPMG LPENVSVIAW GLSLERPTMI ENSBTAP00000028494/1-508 EIFSYHQGLK KWVEVGNSGI FRPEMLLPMG LPENVSVIAW GLSLERPTMI 501 550 ENSTTRP00000003374/1-507 KYGINNIREL VGHKVNLQMV YDSPLCRLDA ERGPPSTQEA A bmy_04860T0/1-535 KYGINNIREL VGHKVNLQMV YDSPLCRLDA ERGPPSTQEA A ENSP00000320309/1-508 KYGINNIREL VGHKVNLQMV YDSPLCRLDA EPRPPPTQEA A BACU003989/1-508 KYGINNIREL VGHKVNLQMV YDSPLCRLDA EQGPPSTQEA A ENSBTAP00000028494/1-508 KYGINNIREL VGHKVNLQMV YDSPLCRLDA ERGPPSTQEA A