KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:36:11 2014  Check: 00 ..

 Name: ENSBTAP00000028520/1-249  Len:    282  Check:  6013  Weight:  1.00
 Name: bmy_16976T0/1-237         Len:    282  Check:  3408  Weight:  1.00
 Name: BACU008669/1-249          Len:    282  Check:  6429  Weight:  1.00
 Name: ENSP00000372155/1-250     Len:    282  Check:  9196  Weight:  1.00
 Name: ENSTTRP00000008171/1-248  Len:    282  Check:  5310  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000028520/1-249  MATLRVLPEA QAKVDVFRED LCTKTENLLG SYFPKKISEL DAFLKEPDLN 
bmy_16976T0/1-237         MTTLRVLPEA QAKVDVFRED LCTKTENLLG SYFPKKISEL DAFLK----- 
BACU008669/1-249          MTTLRVLPEA QAKVDVFRED LCTKTENLLG SYFPKKISEL DAFLKEPALN 
ENSP00000372155/1-250     MAMLRVQPEA QAKVDVFRED LCTKTENLLG SYFPKKISEL DAFLKEPALN 
ENSTTRP00000008171/1-248  MATLRVLPEA QAKVDVFRED LCAKTENLLG SYFPKKISEL DAFLKEPALN 


                          51                                                 100
ENSBTAP00000028520/1-249  EANLSNLKAP LDIPVPDPVK EKEKEERRKQ QEKEDKDEKK KGEDEDKGPP 
bmy_16976T0/1-237         ---------- ---------- ---------- --KEDKDEKK KGEDEDKGPP 
BACU008669/1-249          EANLSNLKAL LDIPVPDPVK EKEKEERKKQ QEKEDKDEKK KGEDEDKGPP 
ENSP00000372155/1-250     EANLSNLKAP LDIPVPDPVK EKEKEERKKQ QEKEDKDEKK KGEDEDKGPP 
ENSTTRP00000008171/1-248  EANLSNLKAP LDIPVPDPVK EKEKEERKKQ QEKEDKDEKK KGEDEDKGPP 


                          101                                                150
ENSBTAP00000028520/1-249  CGPVSCNEKI VVLLQRVKPE IKDVIEKLNL VTTWLQLQIP RIEDGNNFGV 
bmy_16976T0/1-237         CGPVNCNEKI VLLLQRLKPE IKDVIEKLNL VTTWLQLQIP RIEDGNNFGV 
BACU008669/1-249          CGPVNCNEKI VVLLQRLKPE IKDVIENLNL VTTWLQLQIP RIEDGNNFGV 
ENSP00000372155/1-250     CGPVNCNEKI VVLLQRLKPE IKDVIEQLNL VTTWLQLQIP RIEDGNNFGV 
ENSTTRP00000008171/1-248  CGPVNCNEKI VVLLQRLKPE IKDVIEKLNL VTTWLQLQIP RIEDGNNFGV 


                          151                                                200
ENSBTAP00000028520/1-249  AVQEKVFELM TALHTKLEGF HTQISKYFSE RGDAVTKAAK QPHV------ 
bmy_16976T0/1-237         AVQEKVFELM TTLHTKLEGF HTQISKYFSE RGDAVTKAAK QPHVVGEAQV 
BACU008669/1-249          AVQEKVFELM TTLHTKLEGF HTQISKYFSE RGDAVTKAAK QPHV------ 
ENSP00000372155/1-250     AVQEKVFELM TSLHTKLEGF HTQISKYFSE RGDAVTKAAK QPHV------ 
ENSTTRP00000008171/1-248  AVQEKVFELM TTLHTKLEGF HTQISKYFSE RGDAVTKAAK QPHV------ 


                          201                                                250
ENSBTAP00000028520/1-249  ---------- ---------G DYRQLVHELD EAEYRDIRLM VMEIRNAYA- 
bmy_16976T0/1-237         RVHGRRDTFE VRXDPSLPQG DYRQLVHELD EAEYRDIRLM VMEIRNAYA- 
BACU008669/1-249          ---------- ---------G DYRQLVHELD EAEYRDIRLM VMEIRNAYA- 
ENSP00000372155/1-250     ---------- ---------G DYRQLVHELD EAEYRDIRLM VMEIRNAYVR 
ENSTTRP00000008171/1-248  ---------- ---------G DYRQLVHELD EAEYWDIRLM VMEIRNAYVR 


                          251                                                300
ENSBTAP00000028520/1-249  -------VLY DIILKNFEKL KKPRGETKGM IY 
bmy_16976T0/1-237         -------VLY DIILKNFEKL KKPRGETKGM IY 
BACU008669/1-249          -------VLY DIILKNFEKL KKPRGETKGM IY 
ENSP00000372155/1-250     RQGQGRGGQR QLSQATHSLT LQARG----- -- 
ENSTTRP00000008171/1-248  RRGQ---GQR QLSQATHSLT LRAGGE---- --