KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:12 2014 Check: 00 .. Name: ENSP00000311502/1-1381 Len: 1532 Check: 8496 Weight: 1.00 Name: ENSBTAP00000028521/1-1380 Len: 1532 Check: 2499 Weight: 1.00 Name: ENSTTRP00000003951/1-1370 Len: 1532 Check: 6611 Weight: 1.00 Name: bmy_21003T0/1-1362 Len: 1532 Check: 1730 Weight: 1.00 Name: BACU009859/1-1339 Len: 1532 Check: 9606 Weight: 1.00 // 1 50 ENSP00000311502/1-1381 MASPRASRWP PPLLLLLLPL L----LLPPA APGTRDPPPS PARRALSLAP ENSBTAP00000028521/1-1380 ARAGAATMAS PPLLLLLLPL L---LLPPPA APGTRGQPFS PAGAGPAWPT ENSTTRP00000003951/1-1370 ----MASLPP PLMLLLLLPL LLLLLLLLPA APGTRSQPPS PGGAGPAGSP bmy_21003T0/1-1362 ---------A NKSSLIHFPI V--------- ---------- ---------- BACU009859/1-1339 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000311502/1-1381 LAGAGLELQL ERRPEREPPP TPPRERRGPA TPGPSYRAPE PGAATQRGPS ENSBTAP00000028521/1-1380 ESSPGLKLP- -------PSP TSPPERRGPA SPGHRQTAPA PGAARRPGPS ENSTTRP00000003951/1-1370 EPGPERELP- -------P-- --PSERHGPA PPGHRQTTTT PGAATRLGPS bmy_21003T0/1-1362 ---------- ---------- ---------- ---------- ---------- BACU009859/1-1339 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000311502/1-1381 GRAPRGGSAD AAWKHWPESN TE-AHVENIT FYQNQEDFST VSSKEGVMVQ ENSBTAP00000028521/1-1380 SRAPRSGSAA VVKNHWLESN TE-PQIENIT FDQNQVDFST VVSKEGVMVQ ENSTTRP00000003951/1-1370 GRAPGGRSAA AVKNHWLESN TEQPHTENIT FDQNQVDFST VVSKEDVMVQ bmy_21003T0/1-1362 --------SA AVKNHWLESN TEQPHTENIT FDQNQVDFST VVSKEDVMVL BACU009859/1-1339 ---------- ---------- ---------- ---------- -------MVP 151 200 ENSP00000311502/1-1381 TSGKSHAASD APENLTLLAE TADARGRSGS SSRTNFTILP VGYSLEIATA ENSBTAP00000028521/1-1380 TPRKIHPSLD APENITLQTE TAAARGINDS SGRTEFTVPH YG--PGRTTT ENSTTRP00000003951/1-1370 TPRKSHASSD APGNFPPQTE TA-ATGRSDS SRRTDVTLSP VG--PERAAA bmy_21003T0/1-1362 TPRKSHASSD APENFTPQTE TA-ATGRSDS SRRTDFTISP VG--PERAAA BACU009859/1-1339 TPRKSHASSD APENFTPQTE TA-ATGRSDS SRRTDFTISP VG--PERAAA 201 250 ENSP00000311502/1-1381 LTSQSGNLAS ESLHLPSSSS EFDERIAAFQ TKSGTASEMG TERAMGLSEE ENSBTAP00000028521/1-1380 LTSQSSTLAL GKRHPPSSSS GSEARTAPLY MESGTSWG-S PAGAQGLPEE ENSTTRP00000003951/1-1370 LTSQSSTLAL GRHRPPSSSS GSEGRTAPPH TESGTSWG-S PARGQGLPEE bmy_21003T0/1-1362 LTSQSSTLAL GRRHPPSSSS GSEGRTAPPH TESGTSWG-S PARGQGLPEE BACU009859/1-1339 LTSQSSTLAL GRRHPPSSSS GSGGRTAPPH TESGTSWG-S PARGQGLPEE 251 300 ENSP00000311502/1-1381 WTVHSQEATT SAWSPSFLPA LEMGELTTPS RKRNSSGPDL SWLHFYRTAA ENSBTAP00000028521/1-1380 VTVHTQMAAT SVLSQSSLPA VEGGEETALP RQRSSSGPEP SWPPLSRTSA ENSTTRP00000003951/1-1370 VTVHTQVAAT SVLTQSSLPA VEGGEETTLP RQRNSSGPEL SWLPLSRTLA bmy_21003T0/1-1362 VTVHTQVAAT SVLAQSSLPA VEGGEETTLP RQRNSSGPEL SWLPLSRTPA BACU009859/1-1339 VTVHTQVAAT SVLTQSSLPA VEGGGETTLP RQRNSSGPEL SWLPLSRTPA 301 350 ENSP00000311502/1-1381 SSPLLDLSSS SESTEKLNNS TGLQSSSVSQ TKTMHVATVF TDGGPRTLRS ENSBTAP00000028521/1-1380 YSPPSDHPSS SGSTEDLNNS TAVHSSSVSG TESVHVATTF PNSVQRTPQS ENSTTRP00000003951/1-1370 HFPPSDQSAS SGSTEDLNNS TAVHSPSVSG TKSVHVATMF PDGVLKMLQS bmy_21003T0/1-1362 YFPPSDQSAS SGSTEDLNNS TAVHSPSVSG TKSVHVATMF PDGVPRMLQS BACU009859/1-1339 YFSPSDQSAS SGSTEDLNNS TAVHSPSVSG TKSVHVAATF PDGVPRTLQS 351 400 ENSP00000311502/1-1381 LTVSLGPVSK TEGFPKDSRI ATTSSSVLLS PSAVESRRNS RVTGNPGDEE ENSBTAP00000028521/1-1380 SATSLRPLNE TEHFPEDSEI AITSSSVHSS PSEAELRRSS GVFGSPGNGA ENSTTRP00000003951/1-1370 LAISPGPLNE TERFPEDSEM TTTSAAVHSS HSEAGWRRNS GVIRSPGDGE bmy_21003T0/1-1362 LAISPGPLNE TERFPEDSEM TTTSASVHSS PSEAGWRRNS GVIRSPGDGE BACU009859/1-1339 LAISPGPLNE TERFPEDSEM TTTSASVHSS PSEAGWRRNS GVVRSPGDGE 401 450 ENSP00000311502/1-1381 FIEPSTENEF GLTSLR---- -WQNDSPTFG EHQLASSSEV QNGSPMSQTE ENSBTAP00000028521/1-1380 FTELSTEIAF GPTSSNISRE FWQNDSPTSG GPQLASGSGA GNGSPVSQTE ENSTTRP00000003951/1-1370 LTKPSTENGV GLTSSKVSWE FWQNDSPTSR GHQLASSSGV GSGSSVSQTA bmy_21003T0/1-1362 LTKPSTENGV GLTSSKVSGE FWQNDSPTSR GHQLASSSGA GSGSPVSQTA BACU009859/1-1339 LTEPSTENGV GLTSSKVSGE FWQNDSPTSR GHQLASSSGA GSGSPVSQTA 451 500 ENSP00000311502/1-1381 TVSRSVAPMR GGEITAHWLL TNSTTSADVT GSSASYPEGV NASVLTQFSD ENSBTAP00000028521/1-1380 TSSRSIPPVR GEESTALWFS TGSEPFAGAA GSSTSHPEVV NASVLTRFSA ENSTTRP00000003951/1-1370 TVSRSVTLAR GGESTARWFL TDSEPFADAT GSSTSHPEVV NASVLTRFSA bmy_21003T0/1-1362 TVSRSVPPAR GGESTARWFL TDSEPFADAT GSSTSHPEVV NASVLTRFSA BACU009859/1-1339 TVSRSVPPAR GGGSTARWFL TDSEPFANAT GSSTSHPEVV NASDLTRFSA 501 550 ENSP00000311502/1-1381 STVQSGGSHT ALGDRSYSES SS----TSSS ESLNSSAPRG ERS------- ENSBTAP00000028521/1-1380 SAPQSQGSDP ALYEMSYSEL ATEALSSSSS ESLGFSAPRG ERST------ ENSTTRP00000003951/1-1370 SAPQSRGSDP APGERSYSEP ATESLSSSSS ESLGSSAPRG ERS------- bmy_21003T0/1-1362 SAPQSRGSDP APGERNYSEP ATESL-SSSS ESLGSSAPRG ERSTTEDSPE BACU009859/1-1339 SAPQSRGSDP APGERNYSEP ATDSLSSSSS ESLGSSAPRG ERSTTEDSPE 551 600 ENSP00000311502/1-1381 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028521/1-1380 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003951/1-1370 ---------- ---------- ---------- ---------- ---------- bmy_21003T0/1-1362 LAVSSEVEEG ASEGAPGARA HSPHTWATFT GVGERTLRSL TNGSTTPGDV BACU009859/1-1339 LAVSSEVEEG ASEGAPGARA HSPHTWATFT GVGERTLRSL TKGSTTPGDV 601 650 ENSP00000311502/1-1381 ---------- ---------- ---------- ---------- --IAGISYGQ ENSBTAP00000028521/1-1380 ---------- ---------- ---------- ---------- --VTGISYDG ENSTTRP00000003951/1-1370 ---------- ---------- ---------- ---------- --ITGMSYDA bmy_21003T0/1-1362 ERSAATPRDA ERPTQRGNVT ATWDAHPVSG SLAASRVLGG DGVTGMSYDA BACU009859/1-1339 GRSAATPRDA ERPTQRGNVA ATWDAHPVSG SLAASRVLGG DGVTGMSYDA 651 700 ENSP00000311502/1-1381 VRGTAIEQRT SSDHTDHTYL SSTFTKGERA LLSITDNSSS SDIVESSTSY ENSBTAP00000028521/1-1380 ASSTDPDCRT SSEHTNYTCA SSPFTKGERT LLSITDNSSS WDGRETSTSS ENSTTRP00000003951/1-1370 VSGTHPEHGT SSDYTDHTYV SAPFTKGERA LLSIADHSSS LDVRESSTSS bmy_21003T0/1-1362 VSGTHPEHGT SSDYTDHTYV SAPFTKGERA LLSIADHSSS LDVRESSTSS BACU009859/1-1339 VSGTHPEHGA SSDYTAHTYV SAPFTKGERA LLSIADHSSS LDVRESSTSS 701 750 ENSP00000311502/1-1381 IKISNSSHSE YSSFFHAQTE RSNISSYDGE YAQPSTESPV LHTSNLPSYT ENSBTAP00000028521/1-1380 VKISSSLSSD SSPSSQAQTE RSNVSSHQGE HAQPSTGALV LSTASSPSHT ENSTTRP00000003951/1-1370 VKISSSLHSD SSSSSQAQAE RSNVSSHDGE YAQSSTEALV LRTASPPSRT bmy_21003T0/1-1362 VKISGSLNSD SSSPSQAQTE RSNVSSHGGE YAQSSTEALV LRTASPPSRT BACU009859/1-1339 VKISGSLHSD SSSPSQAQTE RSNVSSHGGE YAQSSTEALV LRTASPPSRT 751 800 ENSP00000311502/1-1381 PTINMPNTSV VLDTDAEFVS DSSSSSSSSS SSSSSGPPLP LPSVSQSHHL ENSBTAP00000028521/1-1380 PTLNTLTTLV PRDTDAKSVG G-------AL SSSSSEPPLP LPSVSQSYQ- ENSTTRP00000003951/1-1370 PAVSMLTTLV LLDTDAESVG D-------TS SSSSSGPPLP QPSVSQSYRL bmy_21003T0/1-1362 PTVNMLTTLV LLDTDAESVG D-------TS LSSSSGAPLP QPSVSHSYR- BACU009859/1-1339 PTVNMLTTLV LLDPDAESVG D-------TS LSSSSGPPLP QPSVSQPYR- 801 850 ENSP00000311502/1-1381 FSSILPSTRA SVHLLKSTSD ASTPWSSSPS PLPVSLTTST SAPLSVSQTT ENSBTAP00000028521/1-1380 FSSTLPSAGA STHRLQSSPD APTPLSSSPP PSSVSLTASA PASLSDSQTA ENSTTRP00000003951/1-1370 FSSTLPSTRA STHPPQSAPD VPTPLSSSPP PSLVSLTASA PVSPSVSQTI bmy_21003T0/1-1362 FSSTLPSTRA STHPLQSAPD VPTPSSSSPP PSLVSLTASA PVSPSVSQTV BACU009859/1-1339 FSSSLPSARA STHPPQSAPD VSTPSSSSPP PSLVSLTASA PVSPSVSQTV 851 900 ENSP00000311502/1-1381 LPQSSSTPVL PRARETPVTS FQTSTMTSFM TMLHSSQTAD -LKSQSTPHQ ENSBTAP00000028521/1-1380 LPHAPFTPVL PRTRDAPVTS VRMSAVASSI ---PSSQTAD PPKNQSSPYL ENSTTRP00000003951/1-1370 LPPSSSTLVL PKARDTPVTS AWTSVMASSV AMLPSSQTAD -PKNQSSPHL bmy_21003T0/1-1362 LPPSPSTLVL PKARDTPVTS AWTSIMASSV AMLPSSQTAD -PKNQSSPHL BACU009859/1-1339 LPPSSSTLVL PKARDTPVTS AWTSIMASSV ATLPSSQTAD -PKNQSSPHL 901 950 ENSP00000311502/1-1381 EKVITESKSP SLVSLPTEST KAVTTNSPL- ---PPSLTE- ---SSTEQTL ENSBTAP00000028521/1-1380 KNTVTESKPP SLQTLPAEAT KAVTVMSTLG IPSPRPFTDY STSTDTEQTL ENSTTRP00000003951/1-1370 GKLVTESKPQ SLETLPVEAT ETVTVRSPLG IPSPLALTE- ---SSTEQTL bmy_21003T0/1-1362 EKIVTESKPQ SLETLPVEAT ETVTVRSTLG IPSPLALTE- ---SSTEQTL BACU009859/1-1339 EKIVTESKPQ SLETVPVEAT ETVTVRSTLG IRSPLALTE- ---SSAEQTL 951 1000 ENSP00000311502/1-1381 PATSTNLAQM SPTFTTTILK TSQPLMTTPG TLSSTASLVT GPIAVQTTAG ENSBTAP00000028521/1-1380 PATSTDLAHT SPALAATTPE TSHSPVASPS LQSSTAALTG GPTTGQTVAR ENSTTRP00000003951/1-1370 PATSTSLAQT SPALVATTLQ TSRPRVPSPQ PPSSTASLTG GPTTVQTVAG bmy_21003T0/1-1362 PATSTSLAQT SPALVATTLQ TSHPPVPSPQ PPSSTASRTG GPTTVQTVAG BACU009859/1-1339 PATSTSLAQT SPALVATTLQ TSHPPAPSPQ PPSSTASLTG GPTTVQTVAG 1001 1050 ENSP00000311502/1-1381 K------QLS LTHPEILVPQ ISTEGGISTE RNRVIVDATT GLIPLTSVPT ENSBTAP00000028521/1-1380 ETEQTVVQLS PTSPEILVVQ VTTEGAVTTE ESPVDRDAAT RLFPLT---- ENSTTRP00000003951/1-1370 K------QLP PTSPEILVVR ISTEGAVTTE RNPVNRDAAT GSIALTSAPT bmy_21003T0/1-1362 K------RLP PTSPEILVVR ISTEGAVTTE RNPVNRDAAT GSIALTSAPT BACU009859/1-1339 K------RLP PTSPEILVLR TSTEGAVTTE RNPVNRDAAT GSIALPSAPT 1051 1100 ENSP00000311502/1-1381 SAKEMTTKLG VTAEYSPASR SLGTSPSPQT TVVSTAEDLA PKSATFAVQS ENSBTAP00000028521/1-1380 --KESTTGPG PIEDNSLASP FLKTSPSPRT TPVSTAKVLT PPSTTSTVRS ENSTTRP00000003951/1-1370 SAKEWTTGLA PTEEHSLASH FLRTSPSPQS TPVSTAKVLT STSTTLTAQS bmy_21003T0/1-1362 SAKEWTTGLA PTEEHSLASH FLRTSPSPQS TPVSTAKVLT STSTTFTAQS BACU009859/1-1339 SAEEWTTGLA PTEEHSLASR FLRTSPSPQS TPVSTAKVLT STSTTFTAQS 1101 1150 ENSP00000311502/1-1381 STQSPTTVSS SASVNSCAVN PCLHNGECVA DNTSR-GYHC RCPPSWQGDD ENSBTAP00000028521/1-1380 STRSPTAPSS PAAVNSCTTH PCLHDGKCVV DLTTHPGYRC VCSPAWQGDN ENSTTRP00000003951/1-1370 STQSSTAPSS PASVNSCAAN PCLHDGKCVV DPTSR-GYQC VCSPSWQGDD bmy_21003T0/1-1362 STQSSTAPSS PASVNSCATN PCLHDGKCVV DPTSR-GYQC VCSPSWQGDD BACU009859/1-1339 STQSSTAPSS PASVNSCATN PCLHDGKCVV DPTSR-GYQC VCSPSWQGDD 1151 1200 ENSP00000311502/1-1381 CSVDVNECLS NPCPSTAMCN NTQGSFICKC PVGYQLEKGI CNLVRTFVTE ENSBTAP00000028521/1-1380 CSVDVNECLS NPCPPLATCN NTQGSFTCRC PVGYQLEKGI CNLVRTFVTE ENSTTRP00000003951/1-1370 CNVDVNECLS NPCPPLAMCN NTQGSFTCRC PVGYQLEKGI CNLVRTFVTE bmy_21003T0/1-1362 CSVDVNECLS NPCPPLAMCN NTQGSFTCRC PVGYQLEKGI CNLVRTFVTE BACU009859/1-1339 CNVDVNECLS NPCPPLAMCN NTQGSFTCRC PVGYQLEKGI CNLVRTFVTE 1201 1250 ENSP00000311502/1-1381 FKLKRTFLNT TVEKHSDLQE VENEITKTLN MCFSALPSYI RSTVHASRES ENSBTAP00000028521/1-1380 FKLKKTFLNT TVEKHSDLRE VENEITKMLN VCFSTLPGYT RSTAHVSRES ENSTTRP00000003951/1-1370 FKLKKIFLNA TVEKHSDLRE VENEITKTLN VCFSTLPGYT RSTAHASREP bmy_21003T0/1-1362 FKLKKMFLNT TLEKHSDLRE VENEITKTLN VCFSTLPGYT RSTAHASREP BACU009859/1-1339 FKLKKMFLNT TVEKHSDLRE VENEITKTLN VCFSTLPGYT RSTAHASREP 1251 1300 ENSP00000311502/1-1381 NAVVISLQTT FSLASNVTLF DLADRMQKCV NSCKSSAEVC QLLGSQRRIF ENSBTAP00000028521/1-1380 SVVVMSLQAT FSLASNVTLF DLADRMQKCV NSCWASAEVC QLLGSQRRIF ENSTTRP00000003951/1-1370 SAVVMSLQTT FSLASNVTLF DLADGMQKCV NSCRASAEVC QLLGSQRRIF bmy_21003T0/1-1362 SAVVMSLQTT FSLASNVTLF DLADGMQKCV NSCRASAEVC QLLGSQRRIF BACU009859/1-1339 SVVVISLQTT FSLASNVTLF DLADGMQKCV NSCRASAEVC QLLGSQRRIF 1301 1350 ENSP00000311502/1-1381 RAGSLCKRKS PECDKDTSIC TDLDGVALCQ CKSGYFQFNK MDHSCRACED ENSBTAP00000028521/1-1380 RAGSLCKRKT PECDKETSIC TDLDGVALCQ CKSGYFQFNK MDHSCRACED ENSTTRP00000003951/1-1370 RAGSLCKRYS -RCDKETSIC TDLDGVALCQ CKSGYFQFNK MDHSCRXXXX bmy_21003T0/1-1362 RAGSLCKRKT PECDKETSIC TDLDGVALCQ CKSGYFQFNK MDHSCRACED BACU009859/1-1339 RAGSLCKRKT PECDKETSIC TDLDGVALCQ CKSGYFQFNK MDHSCRACED 1351 1400 ENSP00000311502/1-1381 GYRLENETCM SCPFGLGGLN CGNP------ ---------- ------YQLI ENSBTAP00000028521/1-1380 GYRLENETCM SCPFGLGGLN CGNP------ ---------- ------YQLI ENSTTRP00000003951/1-1370 XXXXXXXXXX XCPFGLGGLN CGNP------ ---------- ------YQLI bmy_21003T0/1-1362 GYRLENETCM SCPFGLGGLN CGNLHTCCLP SSCAGRKAER SPGAGAYQLI BACU009859/1-1339 GYRLENETCM SCPFGLGGLN CGNP------ ---------- ------YQLI 1401 1450 ENSP00000311502/1-1381 TVVIAAAGGG LLLILGIALI VTCCRKNKND ISKLIFKSGD FQMSPYAEYP ENSBTAP00000028521/1-1380 TVVIAAAGGG LLLILGIALI VTCCRKNKND ISKLIFKSGD FQMSPYAEYP ENSTTRP00000003951/1-1370 TVVIAAAGGG LLLILGIALI VTCC-KNKND ISKLIFKSGD FQMSPYAEYP bmy_21003T0/1-1362 TVVIAAAGGG LLLILGIALI VTCCRKNKND ISKLIFKSGD FQMSPYAEYP BACU009859/1-1339 TVVIAAAGGG LLLILGIALI VTCCRKNKND ISKLIFKSGD FQMSPYAEYP 1451 1500 ENSP00000311502/1-1381 KNPRSQEWGR EAIEMHENGS TKNLLQMTDV YYSPTSVRNP ELERNGLYPA ENSBTAP00000028521/1-1380 KNPRSQEWGR EAIEMHENGS TKNLLQMTDV YYSPSSVRNP ELERNGLYPA ENSTTRP00000003951/1-1370 KNPRSQEWGR EAIEMHENGS TKNLLQMTDV YYSPTSVRNP ELERNGLYPA bmy_21003T0/1-1362 KNPRSQEWGR EAIEMHENGS TKNLLQMTDV YYS------- ---------- BACU009859/1-1339 KNPRSQEWGR EAIEMHENGS TKNLLQMTDV YYSPTSVRNP ELERNGLYPA 1501 1550 ENSP00000311502/1-1381 YTGLPGSRHS CIFPGQYNPS FISDESRRRD YF ENSBTAP00000028521/1-1380 YTGLPGSRHS CIFPGQYNPS FISDESRRRD YF ENSTTRP00000003951/1-1370 YTGLPGSRHS CIFPGQYNPS FISDESRRRD YF bmy_21003T0/1-1362 ---------- ---------- ---------- -- BACU009859/1-1339 YTGLPGSRHS CIFPGRYNPS FISDESRRRD YF