KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:12 2014 Check: 00 .. Name: ENSBTAP00000028523/1-182 Len: 270 Check: 4702 Weight: 1.00 Name: ENSP00000390153/1-245 Len: 270 Check: 254 Weight: 1.00 Name: bmy_04952T0/1-263 Len: 270 Check: 7652 Weight: 1.00 Name: ENSTTRP00000008368/1-240 Len: 270 Check: 4631 Weight: 1.00 Name: BACU014184/1-241 Len: 270 Check: 8212 Weight: 1.00 // 1 50 ENSBTAP00000028523/1-182 -----MAMTS VRLPSSILRK PDAWIGLCRA LRGTP-SHKG CASWNRYLYL ENSP00000390153/1-245 MIISAMAMAS VKLLAGVLRK PDAWIGLWGV LRGTPSSYKL CTSWNRYLYF bmy_04952T0/1-263 -----MAMTS VRLPSGVLRK PDAWIGLCGA LRGTP-SHKH CASWNRYLYL ENSTTRP00000008368/1-240 -----MAMTS IRLPSSVLRK PDAWIGLCGA LRGTP-SHKH CASWNRYLYL BACU014184/1-241 ----AMAMTS VRLPSGILRK PDAWIGLCGA LRGTP-SQKH CASWNRYLYL 51 100 ENSBTAP00000028523/1-182 SSAKLNASNY KTLLHNIFSL RLPGLLISPE YIFPFSIRLK SNISSKKSTK ENSP00000390153/1-245 SSTKLRAPNY KTLFYNIFSL RLPGLLLSPE CIFPFSVRLK SNIRSTKSTK bmy_04952T0/1-263 SSTKLNASNY KTFFHNIFSL RLSGLLTSQE YIFPFSIRLK SNVSSKKSTK ENSTTRP00000008368/1-240 SNTKLNASNY KTFFHNIFSL RLSGLLISQE YIFPFSIRLK SNVSSKKSTK BACU014184/1-241 SSTKLNSSNY KTFFHNIFSL RLSGLLTSQE YIFPFSIRLK SNVSSKKSTT 101 150 ENSBTAP00000028523/1-182 KTLQKVEDEG DSDEE--RDE MSELEEEPED NPSEVKDYKD LDKAVQSFRY ENSP00000390153/1-245 KSLQKVDEE- DSDEESHHDE MSEQEEELED DPTVVKNYKD LEKAVQSFRY bmy_04952T0/1-263 ETLQKVEDEG DSDEESERHE MSEQEEEPED DPTAVRDYKD LDKVVQSFRY ENSTTRP00000008368/1-240 KTLQKVEDEG DSDEESEHHE MSEQEEEPED DPSAVRDHKD LDKVVQSFRY BACU014184/1-241 KTLQQVEDEG DSDEESERHE MSEQEEEPED DPTAVRDYKD LDKVVQSFRY 151 200 ENSBTAP00000028523/1-182 DVILKTGLDI GR-------- ---------- ---------- ---------- ENSP00000390153/1-245 DVVLKTGLDI GRNKVEDAFY KGE---LRLN EEKLWK---- ---------- bmy_04952T0/1-263 DVILKTGLDI GRNKVEDAFY KAQMMPLNPQ GEAVFMPRCG LSLSASQPRG ENSTTRP00000008368/1-240 DVILKTGLDI GRNKVEDAFY KGE---LRLN GEKLWK---- ---------- BACU014184/1-241 DVILKTGLDI GRNKVEDAFY KGE---LRLN GEKLWK---- ---------- 201 250 ENSBTAP00000028523/1-182 --------KY VRFHTKITCL LGC------- ---------- ---------F ENSP00000390153/1-245 ------KSRT VKVGDTLDLL IGEDKEAGTE TVMRILLKKV FEEKTESEKY bmy_04952T0/1-263 EKVNGLKSAH VKVGDTLDLL IGEDREAETE TVMRILLKKV FEEKTSSEKY ENSTTRP00000008368/1-240 ------KSRT VKVGDTLDLL IGEDREAETE TVMRILLKKV FEEKTSSEKY BACU014184/1-241 ------KSRT VKVGDTLDLL IGEDREAETE TVMRILLKKV FEEKTSSEKY 251 300 ENSBTAP00000028523/1-182 KAALPITWLI LQ-------- ENSP00000390153/1-245 RVVLRR-WKS LKLPKKRMSK bmy_04952T0/1-263 RVVLRR-WKK LKLPKKSTLK ENSTTRP00000008368/1-240 RVVLRR-WKQ LKLPKKSTLK BACU014184/1-241 RVVLRR-WKK LKLPKKSTLK