KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:15 2014 Check: 00 .. Name: ENSP00000310431/1-526 Len: 548 Check: 8313 Weight: 1.00 Name: ENSBTAP00000028561/1-528 Len: 548 Check: 8725 Weight: 1.00 Name: ENSTTRP00000007568/1-454 Len: 548 Check: 3036 Weight: 1.00 Name: bmy_01493T0/1-483 Len: 548 Check: 6519 Weight: 1.00 Name: BACU017907/1-502 Len: 548 Check: 3721 Weight: 1.00 // 1 50 ENSP00000310431/1-526 MPAVSGPGPL FC--LLLLLL DPHSPETGCP PLRRFEYKLS FKGPRLALPG ENSBTAP00000028561/1-528 MRVVRGLDPL LC-LLLLVLL DPHSPEMGHL PQRRFEYKLS FKGPRLALPG ENSTTRP00000007568/1-454 ---------- ---------- ---------- ---------- ---------- bmy_01493T0/1-483 MLVVHGLDPL LCLLLLLLLL DPHSPEWGHP PQRRFEYKLS FKGPRLALPG BACU017907/1-502 MLVVGGLDPS LSLLLLLLLL DPHSPEWGHP PQRRFEYKLS FKGPRLALPG 51 100 ENSP00000310431/1-526 AGIPFWSHHG DAILGLEEVR LTPSMRNRSG AVWSRASVPF SAWEVEVQMR ENSBTAP00000028561/1-528 VGIPFWSHHG DAIPGLEEVR LAPSMRNRSG AVWSTNPVLF PAWEVEIQMR ENSTTRP00000007568/1-454 ---------- -AIPGPEEVW LAPAMRNWNG AVWSRTPVLF SAWEVEMQMR bmy_01493T0/1-483 AGIPFWSHHG DAIPGLEEVR LAPAMRNRNG AVWSRTPVLF SAWEVEMQMR BACU017907/1-502 AGIPFWSHHG DAIPGLEEVR LAPAMQNRND AVWSRTPVLF SAWEVEMQMR 101 150 ENSP00000310431/1-526 VTGLGRRGAQ GMAVWYTRGR GHVGSVLGGL ASWDGIGIFF DSPAEDTQDS ENSBTAP00000028561/1-528 VTGPGRWGAQ GMAVWYTRGR GQVGPVLGEP DLGDGIGILF DSSAQDPQNS ENSTTRP00000007568/1-454 VTGQGRRGAQ GMAVWYTQGR GQVGSVLGAL DSGDGIGTLF DSSAEDTQNS bmy_01493T0/1-483 VTGLGRRGAQ GMAVWYTQGR GQVGSVLGAL DSGDGIGILF DSSAEDTQNS BACU017907/1-502 -GPLSRAAGD PQAVWYTQGR GQVGSVLGAL DSGDGIGILF DSSAEDTQNS 151 200 ENSP00000310431/1-526 PAIRVLASDG HIPSEQPG-- -DGASQGLGS CHWDFRNRPH PFRARITYWG ENSBTAP00000028561/1-528 PAIYVLARDR HTLYEPLG-- -DGGSLLLGS CRQDFRNRPY PFRARITYWG ENSTTRP00000007568/1-454 PAIRVLASDG HNPYGALG-- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01493T0/1-483 PAIRVLASDG HTPYEVLGAH RDGASRVLGS CHQDFRNQPY PFRARITYWG BACU017907/1-502 PAIRVLASDG HTPYEVLG-- -DGASRVLGS CHRDFRNQPY PFRARITYWG 201 250 ENSP00000310431/1-526 QRLRMSLNSG LTPSDPGEFC VDVGPLLLVP GGFFGVSAAT GTLADDHDVL ENSBTAP00000028561/1-528 QRLRVSLNSG LTPSGPDEVC VDVGPLLLAP GGFFGVSAAT SILADDHDVL ENSTTRP00000007568/1-454 XXXXVSLNSD LTPSDPDEVC VDVGPLLLAP GGFFGVSAAT STLTDDHDVL bmy_01493T0/1-483 QRLRVSLNSD LTPSD----- ---------- ---------- ---LDDHDVL BACU017907/1-502 QRLRVSLNSD LTPSDPGEVC VDVGPLLLAP GGFFGVSAAT STLADDHDVL 251 300 ENSP00000310431/1-526 SFLTFSLSEP SPEVPPQPFL EMQQLRLARQ LEGLWARLGL GTREDVTPKS ENSBTAP00000028561/1-528 SFLTFSLWEP GPEPPSQPFL ETEQLRLAKQ LEGLQARLGL GTKEDMTPEL ENSTTRP00000007568/1-454 T---FSLREP GAEPPPQPFL ETEQLRLARQ LEGLRARLAL GTKEDMIPKP bmy_01493T0/1-483 SFLTFSLREL GAEPAPQPFL ETEQLRLARQ LEGLRARLAL GTKEDMIPKP BACU017907/1-502 SFLTFSLREP GAEPPPQPFL ETEQLRLARQ LEGLQARLAL GTKEDMIPKP 301 350 ENSP00000310431/1-526 DSEAQGEGER LFDLEETLGR HRRILQALRG LSKQLAQAER QWKKQLGPPG ENSBTAP00000028561/1-528 NYGVWEEGEQ SFGLEETLHR HSQILQALQG LSKHLMQAER QWKQQLGSPG ENSTTRP00000007568/1-454 NCEVQEEGGR SFALEETLHR HSQVLQALQG LSKHLAQAER QRKKQLVSPG bmy_01493T0/1-483 NCEVQEEGEK SFDLEETLHR HSQILQALQG LSKHLAQAER QWKKQLVSPG BACU017907/1-502 NCEVQEEGET SFDLEETLHR HSQILQALQG LSKHLAQAER QWKKQLVSPG 351 400 ENSP00000310431/1-526 QARPDGGWAL DASCQIPSTP GRGGHLSMSL NKDSAKVGAL LHGQWTLLQA ENSBTAP00000028561/1-528 HIRPEGGWAQ DSPCQAPPTP ERGGSLSRSL GKDSAKVSAL LLGQRTLLQD ENSTTRP00000007568/1-454 QARPEEAWAQ DSPCQVLPTP ERRG------ -QDSAKVSAL LRGQRTLLQD bmy_01493T0/1-483 QARPEGAW-- ---------- ---------- --DSAKVSAL LRGQRTLLQD BACU017907/1-502 QARPEGAW-- ---------- ---------- --DSAKVSAL LHGQRTLLQD 401 450 ENSP00000310431/1-526 LQEMRDAAVR MAAEAQVSYL PVGIEHHFLE LDHILGLLQE ELRGPAKAAA ENSBTAP00000028561/1-528 LQEMRDAAAH MASRAQVFYL PVGTKHHFSE LAQILSLLQK DLRGPARAAA ENSTTRP00000007568/1-454 LQEMRNAAAH VASRAQVFYL PVGTKHHFLE LAQILSLLQK DLRGPVXXXX bmy_01493T0/1-483 LQEMRDAAAH MASRAQVFYL PVGTKHHFLE LAQILSLLQK DLQGPVVRGK BACU017907/1-502 LQEMRDAAAH MASRAQVFYL PVGTKHHFLE LAQILSLLQK DLRGPVKAAA 451 500 ENSP00000310431/1-526 KAPRPPGQPP RASSCLQPGI FLFYLLIQTV GF--FGYVHF R--------- ENSBTAP00000028561/1-528 KDPRSPGRSP RVSSCLQPGI FLFFLFIQTV GF--FCYVHF SK-------- ENSTTRP00000007568/1-454 XXXXXXXXXX XXXXXLQPGI SI--LVIQTA GF---CYVHF R--------- bmy_01493T0/1-483 EGGTRQPRTP A--------- ----HLVGPQ GFPRACSLAS SCSSSSSRLQ BACU017907/1-502 KDSCPPGRPP GVSSCLQPGI FLFFLLIQIA GF--FCYVHF SVKLSG---- 501 550 ENSP00000310431/1-526 ------QELN KSLQECLSTG SLPLGPAPHT PRALGILRRQ PLPASMPA ENSBTAP00000028561/1-528 ------QKLD KGLQDYLSTC SLPLSSTPQI PRVLGALRRQ PFSPSIQA ENSTTRP00000007568/1-454 ------QGLD KNLQDYLSTG SLPLSPAPQV PRTLGALRRQ PLSPSIHG bmy_01493T0/1-483 ASSAIKQELD KNLQDDLSTG SLPLSPAPQV PRTLGALRRQ PLSPSIHG BACU017907/1-502 ------QLLG QQVGKKVGEG PGLLAFAAEI ---LATRRRR KWGGE---