KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:16 2014 Check: 00 .. Name: ENSBTAP00000028563/1-426 Len: 797 Check: 5547 Weight: 1.00 Name: ENSP00000417207/1-431 Len: 797 Check: 2017 Weight: 1.00 Name: ENSTTRP00000011612/1-424 Len: 797 Check: 8673 Weight: 1.00 Name: bmy_09807T0/1-786 Len: 797 Check: 8943 Weight: 1.00 Name: BACU006390/1-286 Len: 797 Check: 2046 Weight: 1.00 // 1 50 ENSBTAP00000028563/1-426 MQKATYYDNT AAALFGGYPS YPGSNGFGYD GPPQPPFQAA THLESDYQRS ENSP00000417207/1-431 MQKATYYDNA AAALFGGYSS YPGSNGFGFD VPPQPPFQAA THLEGDYQRS ENSTTRP00000011612/1-424 MQKATYYDNA AAALFGGYSS YPGSNGFGYD GPPQPPFQAA THLEGDYQRS bmy_09807T0/1-786 MQKATYYDNA AAALFGGYSS YPGSNGFGYD GPPQPTFQAA THLEGDYQRS BACU006390/1-286 MQKATYYDNA AAALFGGYSP YPGSNGFGYD GPPQPPFQAA THLEGDYQRS 51 100 ENSBTAP00000028563/1-426 ACSLQSLGNA APHAKGKELN GSCMRPGLAS EPLPAPPGSP PPSAAPTSTT ENSP00000417207/1-431 ACSLQSLGNA APHAKSKELN GSCMRPGLAP EPLSAPPGSP PPSAAPTSAT ENSTTRP00000011612/1-424 ACSLQSLGNA APHAKSKELN GSCMRPGLAP EPLPAPPGSP PPSAAPTSTT bmy_09807T0/1-786 ACSLQSLGNA TPHAKSKELN GSCMRPGLAP EPLPAPPGSP PPSAAPTSTT BACU006390/1-286 ACSLQSLGNA TPHAKSKELN GSCMRPGLAP EPLPAPPGSP PPSAAPTSTT 101 150 ENSBTAP00000028563/1-426 SNSSNGGGPS KSGPPKCGAG SNSTLTKQIF PWMKESRQTS KLKNSSPGTA ENSP00000417207/1-431 SNSSNGGGPS KSGPPKCGPG TNSTLTKQIF PWMKESRQTS KLKNNSPGTA ENSTTRP00000011612/1-424 SNSSNGGGPS KGGPPKCGPG SNSTLTKQIF PWMKESRQTS KLKNISPGTA bmy_09807T0/1-786 SNSSNGGGPS KSGPPKCGPG SNSTLTKQIF PWMKESRQTS KLKNISPGT- BACU006390/1-286 SNSSNGGGPS KSGPPKCGPG SNSTLTKQIF PWMKESRQTS KLKNISPGT- 151 200 ENSBTAP00000028563/1-426 EGCGSGGGGG -----GGSGS SGGGGGGGDK SPPGSAASKR ARTAYTSAQL ENSP00000417207/1-431 EGCGGGGGGG GGGGSGGSGG GGGGGGGGDK SPPGSAASKR ARTAYTSAQL ENSTTRP00000011612/1-424 EGCGGGGG-- -----GGSGG GGGGGGGGDK SPPGSAASKR ARTAYTSAQL bmy_09807T0/1-786 ---GTGSL-- -----ASSSS AFVRARNVTQ SPPGSAASKR ARTAYTSAQL BACU006390/1-286 ---------- -----DGPGL QEAAGGG--- -------ARR LRTAYTNTQL 201 250 ENSBTAP00000028563/1-426 VELEKEFHFN RYLCRPRRVE MANLLNLSER QIKIWFQNRR MKYKKDQKAK ENSP00000417207/1-431 VELEKEFHFN RYLCRPRRVE MANLLNLSER QIKIWFQNRR MKYKKDQKAK ENSTTRP00000011612/1-424 VELEKEFHFN RYLCRPRRVE MANLLNLSER QIKIWFQNRR MKYKKDQKAK bmy_09807T0/1-786 VELEKEFHFN RYLCRPRRVE MANLLNLSER QIKIWFQNRR MKYKKDQKAK BACU006390/1-286 LELEKEFHFN KYLCRPRRVE IAALLDLTER QVKVWFQNRR MKHKRQTQHR 251 300 ENSBTAP00000028563/1-426 GLASSSGGPS PAGSPSQPMQ STAGFMNALH SMTPSYESPS PPAFGKAHQN ENSP00000417207/1-431 GLASSSGGPS PAGSPPQPMQ STAGFMNALH SMTPSYESPS PPAFGKAHQN ENSTTRP00000011612/1-424 GLASSSGGPS PAGSPPQPMQ STAGFMNALH SMTPSYESPS PPAFGKAHQN bmy_09807T0/1-786 GLASSSGGPS PAGSPPQPMQ STAGFMNALH SMTPSYESPS PPAFGKAHQN BACU006390/1-286 ---------- ---------- ---------- --EPPDEEPA CP-------- 301 350 ENSBTAP00000028563/1-426 AYALPSNYQP PLKGCGAPQK YPQTPAPDYE PHVLQTNGGA YGTPTMQGSP ENSP00000417207/1-431 AYALPSNYQP PLKGCGAPQK YPPTPAPEYE PHVLQANGGA YGTPTMQGSP ENSTTRP00000011612/1-424 AYALPSNYQP PLKGCGAPQK YPPTPAPDYE PHVLQANGGA YGTPTMQGSP bmy_09807T0/1-786 AYALPSNYQP PLKGCGAPQK YPPTPAPDYE PHVLQANGGA YGTPTMQGSP BACU006390/1-286 ---------- -----GAPKD ---TGEPAEE P----LSGGL --SPSLQGS- 351 400 ENSBTAP00000028563/1-426 VYVGGGGYAD PLPPPAGPSL YGLNHLSHHP SGNLDYNGAP PMAPSQHHGP ENSP00000417207/1-431 VYVGGGGYAD PLPPPAGPSL YGLNHLSHHP SGNLDYNGAP PMAPSQHHGP ENSTTRP00000011612/1-424 VYVGGGGYAD PLPPSAGPSL YGLNHLSHHP SGNLDYNGAP PMAPSQHHGP bmy_09807T0/1-786 VYVGGGGYAD PLPPPAGPSL YGLNHLSHHP SGNLDYNGAP PMAPSQHHGP BACU006390/1-286 -------LDS PVP------- --------FS EEELDFFTST LCAIDLQFS- 401 450 ENSBTAP00000028563/1-426 CDPHPTYTDL SSHHAPPPQG RIQEAPKLTH L--------- ---------- ENSP00000417207/1-431 CEPHPTYTDL SSHHAPPPQG RIQEAPKLTH L--------- ---------- ENSTTRP00000011612/1-424 CDPHPTYTDL SSHHAPPPQG RIQEAPKLTH L--------- ---------- bmy_09807T0/1-786 CDPHPTYTDL SSHHAPPPQG RIQEAPKLTH LEIGFINSQP SLAECLTSFP BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 AVLETFQTSS IKESTLIPPP PPFEQTFPSL QPGASTLQRP GSQKRAEDGP BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 ALPPPPFPAA PLAPQFPWMK EKKSAKKPSQ SATSPPAASS VPASGVGSPA BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 GRRGWAKDTA RVDAQPAFPA DGPGLQEAAG GGARRLRTAY TNTQLLELEK BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 EFHFNKYLCR PRRVEIAALL DLTERQVKVW FQNRRMKHKR QTQHREPPDE BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 EPACPGAPKD TGEPAEEPVT SPGRPTASQA AQEACCHPPE VAPGPPSASG BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ---------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ---------- bmy_09807T0/1-786 PRPLAARVED ADARRPGGAL RRAGGLGPEP LPEDAFPERQ DSPFLPDLSF BACU006390/1-286 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000028563/1-426 ---------- ---------- ---------- ---------- ------- ENSP00000417207/1-431 ---------- ---------- ---------- ---------- ------- ENSTTRP00000011612/1-424 ---------- ---------- ---------- ---------- ------- bmy_09807T0/1-786 FAADSCLQLS GGLSPSLQGS LDSPVPFSEE ELDFFTSTLC AIDLQFS BACU006390/1-286 ---------- ---------- ---------- ---------- -------