KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:16 2014 Check: 00 .. Name: bmy_02524T0/1-522 Len: 711 Check: 6833 Weight: 1.00 Name: ENSTTRP00000012111/1-499 Len: 711 Check: 5194 Weight: 1.00 Name: ENSP00000351682/1-507 Len: 711 Check: 5485 Weight: 1.00 Name: BACU020001/1-494 Len: 711 Check: 328 Weight: 1.00 Name: ENSBTAP00000028564/1-510 Len: 711 Check: 9354 Weight: 1.00 // 1 50 bmy_02524T0/1-522 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012111/1-499 MDPKVGRM-A SSLLAFLLLL DGGMFSPSSP PTGLLEKVFQ YIDLHQDEFV ENSP00000351682/1-507 MDPKLGRMAA SLLAVLLLLL ERGMFSSPSP PPALLEKVFQ YIDLHQDEFV BACU020001/1-494 ---------- ---LAFLLLL DGGMFSPSSP PTGLLEKVFQ YIDLHQDEFV ENSBTAP00000028564/1-510 MAPAVAHSQA ESLLAFRLLL VGGMFSASTP PPGPLEKVFQ YIDLHQDEFV 51 100 bmy_02524T0/1-522 ---MCW---- ---------- ---------- ---KWSLWGT ------GGHE ENSTTRP00000012111/1-499 QTLKEWVAVE SDSVQPVLRL RRELLRMTDL AADRLRNLGA HVDLVDAGFQ ENSP00000351682/1-507 QTLKEWVAIE SDSVQPVPRF RQELFRMMAV AADTLQRLGA RVASVDMGPQ BACU020001/1-494 QTLKEWVAVE SDSVQPVLRL RRELLRMMGL AAERLRLLGA RVDSVDAGFQ ENSBTAP00000028564/1-510 QTLKEWVAVE SDSVQPVPRL RRELLRMAGL AADRLRGLGA RVASVDAGFQ 101 150 bmy_02524T0/1-522 EVAGGQFRVF SPL------- SERWDIVCSC AQ---EPVVE TPQW------ ENSTTRP00000012111/1-499 QLPDGQSLPI PPIILAALGN DPKKPTVCFY GHLDVQPARR EDGWVTDPHT ENSP00000351682/1-507 QLPDGQSLPI PPIILAELGS DPTKGTVCFY GHLDVQPADR GDGWLTDPYV BACU020001/1-494 QLPDGQSLPI PPIILAELGD DPKKPTVCFY GHLDVQPARQ EDGWVTDPYT ENSBTAP00000028564/1-510 QLSDGQTLPI PPILLAELGS DPKKPTVCFY GHLDVQPARQ EDGWLTDPYT 151 200 bmy_02524T0/1-522 ---------- ---------- ---------- ---------- -AGLVQGLGC ENSTTRP00000012111/1-499 LTEVDGKLYG RGTTDNKGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSP00000351682/1-507 LTEVDGKLYG RGATDNKGPV LAWINAVSAF RALEQDLPVN IKFIIEGM-- BACU020001/1-494 LTEVDGKLYG RGTTDNKGPV LAWINAVSTF RALDE----- -VGLIQGLGC ENSBTAP00000028564/1-510 LTEVDGKLYG RGTTDNKGPV LAWINAVSVF KALDEDLPVN IKFLIEGM-- 201 250 bmy_02524T0/1-522 ARWCDGEGGE VSQDIAHGEA EGMHRGIQV- -----EWGEK KDRRT----- ENSTTRP00000012111/1-499 ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- XXXXXXXXXX ENSP00000351682/1-507 ----EEAGSV ALEELVEKEK DRFFSGVDYI VISDNLW--- ISQRKPAITY BACU020001/1-494 ARWCDGEGGE VSQDIAHGEA ERMHRGIQV- -----EWGEK KDRRRGVSEQ ENSBTAP00000028564/1-510 ----EESGSL ALEELVRKEK SGFFSSVDCI VISDNLW--- ISRRKPALIY 251 300 bmy_02524T0/1-522 -RRG------ ---EVKCRDQ DFHSGTFGGI LNEPMADLVA LLAHAGKAAS ENSTTRP00000012111/1-499 XXXXXXXX-- -XXXVKCRDQ DFHSGTFGGI LNEPMADLVA LL-------- ENSP00000351682/1-507 GTRGNSYF-- -MVEVKCRDQ DFHSGTFGGI LHEPMADLVA LL-------- BACU020001/1-494 PRRKAAAFPF PVLQVKCRDQ DFHSGTFGGI LNEPMADLVA LL-------- ENSBTAP00000028564/1-510 GTRGNSYF-- -TVEVKCRDQ DFHSGTFGGI LNEPMADLVA LL-------- 301 350 bmy_02524T0/1-522 ILRKQRFKAT SRAGPWGSST GESELLRSQA HLLRTCVAVF TLRAMEHLVK ENSTTRP00000012111/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000351682/1-507 ---------- ---------- ---------- ---------- ---------- BACU020001/1-494 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028564/1-510 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_02524T0/1-522 QMNEPEMITP KHPPSTHGVT LVIQPRVVRD VPXCWKVESS VRVGPLRSCG ENSTTRP00000012111/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000351682/1-507 ---------- ---------- ---------- ---------- ---------- BACU020001/1-494 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028564/1-510 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_02524T0/1-522 VQNTADVAQP GSLVDSSGRI LIPGIYDHVA PVTEEEKRTY EAIDLDLEEY ENSTTRP00000012111/1-499 ---------- GSLVDSSGRI LIP-IYDHVA PVTEE--KEY EAIDLD-DEY ENSP00000351682/1-507 ---------- GSLVDSSGHI LVPGIYDEVV PLTEEEINTY KAIHLDLEEY BACU020001/1-494 ---------- GSLVDSSGRI LIPGIYDHVA PVTEEEKRTY EAINLDLEEY ENSBTAP00000028564/1-510 ---------- GSLVDASGRI LVPGIYGHVA PVTEEEKRVY EAIDLDVEEY 451 500 bmy_02524T0/1-522 RKSSQVKKFL FDTKEELLMH LWRYPSLSIH GIEGAFHEPG TKTVIPGRVI ENSTTRP00000012111/1-499 WHSSQE--FL FDTEEELLMH LWRYPSLSIH GIEGAFHEPG AKTVIPGRVI ENSP00000351682/1-507 RNSSRVEKFL FDTKEEILMH LWRYPSLSIH GIEGAFDEPG TKTVIPGRVI BACU020001/1-494 RKSSQVKKFL FDTKEELLMH LWRYPSLSIH GIEGAFHEPG AKTVIPGRVI ENSBTAP00000028564/1-510 RNSSQVKKFL FDTKEELLMH LWRYPSLSIH GIEGAFHEPG AKTVIPGRVI 501 550 bmy_02524T0/1-522 GKFSIRLVPH MNVSVVEKQM EKLTAYGWAE ---------- --LGI----- ENSTTRP00000012111/1-499 GKFSIRLVPH MNMSVVEKQV KQHLDYI-SK RNSSNQMTVS MTLGLHPWVA ENSP00000351682/1-507 GKFSIRLVPH MNVSAVEKQV TRHLEDVFSK RNSSNKMVVS MTLGLHPWIA BACU020001/1-494 GKFSIRLVPH MNMSVVEKQV KQHLDYIFSK RNSSNQMTVS MTLGLHPWTA ENSBTAP00000028564/1-510 GKFSIRLVPH MDMSVVETQV KQHLEYIFSK RNSSNQMTVS MALGLHPWIA 551 600 bmy_02524T0/1-522 SSCSHQFV-- ------LFGT EPDMIRDGST IPIAKIFQDT IQKSVMMLPL ENSTTRP00000012111/1-499 NIRDNQYLAA KRAIKTVFGT EPDMIRDGST IPIARIFQDT IQKSVMMLPL ENSP00000351682/1-507 NIDDTQYLAA KRAIRTVFGT EPDMIRDGST IPIAKMFQEI VHKSVVLIPL BACU020001/1-494 NTRDNQYLAA KRAIKTVFGT EPDMIRDGST IPIAKIFQDT IQKSVMMLPL ENSBTAP00000028564/1-510 NISDHQYLAA KRAIKTVFGT EPDMIRDGST IPIAKILQDT TQKSVIMLPL 601 650 bmy_02524T0/1-522 GAVDDGEHSQ NEKINSTAYC NFPVGSFLEE LLKHDTALTS CFPFIYFSCF ENSTTRP00000012111/1-499 GAVDDGEHSQ KEKINRWNYI E---GSKL-- ---------- ------FAAF ENSP00000351682/1-507 GAVDDGEHSQ NEKINRWNYI E---GTKL-- ---------- ------FAAF BACU020001/1-494 GAVDDGEHSQ NEKINRWNYI E---GSKL-- ---------- ------FAAF ENSBTAP00000028564/1-510 GAVDDGEHSQ NEKINRWNYI E---GSKL-- ---------- ------FAAF 651 700 bmy_02524T0/1-522 FKSVEMEMIN IHILMPSGIP CAKMNDIESF DILDFVGPNW CIWQTSQELN ENSTTRP00000012111/1-499 F----LEMAK LH-------- ---------- ---------- ---------- ENSP00000351682/1-507 F----LEMAQ LH-------- ---------- ---------- ---------- BACU020001/1-494 F----LEMAK LH-------- ---------- ---------- ---------- ENSBTAP00000028564/1-510 F----LEMAK LH-------- ---------- ---------- ---------- 701 750 bmy_02524T0/1-522 IQEVYDPHLY F ENSTTRP00000012111/1-499 ---------- - ENSP00000351682/1-507 ---------- - BACU020001/1-494 ---------- - ENSBTAP00000028564/1-510 --------SS W