KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:16 2014 Check: 00 .. Name: BACU005794/1-257 Len: 316 Check: 2613 Weight: 1.00 Name: ENSP00000356536/1-273 Len: 316 Check: 536 Weight: 1.00 Name: ENSBTAP00000028569/1-300 Len: 316 Check: 9915 Weight: 1.00 Name: bmy_17252T0/1-214 Len: 316 Check: 2405 Weight: 1.00 Name: ENSTTRP00000010197/1-260 Len: 316 Check: 4429 Weight: 1.00 // 1 50 BACU005794/1-257 MGGFEGHLYP ELSLFLYGLY HARLVSRALI RNYPVQYLPR RPCSKGRWAR ENSP00000356536/1-273 ---------- ---------- --------MI LKGCLLYPLC SPRNKQRCAR ENSBTAP00000028569/1-300 MGTFIGHVYP GLFLLAYGLY RAVVVSKAVI LSDSFPDPSL PPKNKGRWAR bmy_17252T0/1-214 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010197/1-260 ---------- ---------- --------VI FSDSFLYPSS PPRNKGRWAR 51 100 BACU005794/1-257 LQQIYYVGLA KILSSFILVA QELHNIQGQF VLISKIYHQR NFLYHKQWQH ENSP00000356536/1-273 LWKIAYGGLL KIVTGSLLTF YVVLCLDGGM VLMRKQVPSR -FMYPKEWQH ENSBTAP00000028569/1-300 LWKMSHRGLL KMLAGFGLMA YEISCVERGL TLMNRDLPPR -FMYAKQWQH bmy_17252T0/1-214 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010197/1-260 LWKISYGGLL KTLAGSGLLV YEISCVKRGL ILMNRELPLT -VMYAKEWQH 101 150 BACU005794/1-257 LTLYTTFFLS GCVDVVSQNL LPQRSPALEQ GAQALGMFLI LPLMVSHLQD ENSP00000356536/1-273 LTMFILLTLN GCVDFMSKNV LPQRCVGLEK GTLVLIIYEL LLLMVSHVKD ENSBTAP00000028569/1-300 LTMFILLTLN GCIDIMSKNL LPQRCVPLEK GILVLTFYVL LLLLVSHVQD bmy_17252T0/1-214 --MFILLTLN GCVEVVSKNL LPQRCVPLEK GTLVLTFYVL LLLLVSHVQD ENSTTRP00000010197/1-260 VTMYILLTLN GCVEVVSKNL LPQHCVPPEE GTLVLTFYVL LLLLVSHVQD 151 200 BACU005794/1-257 SEGVELQCHV LLIQALFLLL LVVIAELWAP NVRQLWVMKA FLYMIIGSWL ENSP00000356536/1-273 SEGVELHVYS LLILVVFLLL LVLTAELWAP NMCHLQLMET FLILMMGSWL ENSBTAP00000028569/1-300 SVGVEMHVHS LLILVVLLLM LVFTAKLWAP DTFQLAVIET FLFQMMGSWL bmy_17252T0/1-214 SAGVELQVHS LLILVVLLLM LVLTVQLWAP DTFQLSVIET LLFQIMGSWL ENSTTRP00000010197/1-260 SAGVELQVHS LLILVVLLLM LVLTVQLWIP DTFQLSVIGT FLFQILGSWL 201 250 BACU005794/1-257 IQIAFMLYKP ISGHKWMDDD KNDILFITIF FCWHVASLAI LMIWIYGVSF ENSP00000356536/1-273 MQAGFILYRP VSGYPWQDDD ISDIMFVTTF FCWHVMINAS FLLGIYGFSS ENSBTAP00000028569/1-300 VQAGFILYKP VSGYPWEDDN ISDIMFVTTF FCWHVMINAL CLLGIYGVSS bmy_17252T0/1-214 VQAGFILYKP VTGYPWQDDD INDIMFVTTF FCWHVMVNAL CLLGIYGVSY ENSTTRP00000010197/1-260 VQAGFILYKP GTGYPGQDDD IIDITFVTTF FCWHVMIDAL CLLGIYGVSS 251 300 BACU005794/1-257 LWY------- ---------C YIC------- ---------- ---------- ENSP00000356536/1-273 FWYHCFRPSL KLTGPKEAPY YASTPGPLYK LLQEVEQSEK EDQALLLPKS ENSBTAP00000028569/1-300 FWHRCYHPSW KLTGSREAPG YIYSRRPLYQ LLQEVEQSEK DDQALLSKSS bmy_17252T0/1-214 FWHCCYRPSW KLTGSREAPC YTSTXGPLYK LLQEVDQSES GRLSTSSWVL ENSTTRP00000010197/1-260 FWHCCYRPSW KLTGSREAPC YMTTVGPLYK LLQEVDQSE- ---------- 301 350 BACU005794/1-257 ---------- ------ ENSP00000356536/1-273 SP-------- ------ ENSBTAP00000028569/1-300 P--------- ------ bmy_17252T0/1-214 NAWAQILVRA EDNNCL ENSTTRP00000010197/1-260 ---------- ------