KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:17 2014 Check: 00 .. Name: ENSP00000361668/1-178 Len: 233 Check: 2210 Weight: 1.00 Name: ENSBTAP00000028571/1-177 Len: 233 Check: 2471 Weight: 1.00 Name: ENSTTRP00000005265/1-180 Len: 233 Check: 335 Weight: 1.00 Name: bmy_12026T0/1-233 Len: 233 Check: 4597 Weight: 1.00 Name: BACU000382/1-180 Len: 233 Check: 1087 Weight: 1.00 // 1 50 ENSP00000361668/1-178 MVSVPTTWCS VALALLVALH E--------- ---------- ---------- ENSBTAP00000028571/1-177 ---MPTALCS IALALLVALH E--------- ---------- ---------- ENSTTRP00000005265/1-180 MVAMPTAWCS IALALLVALH E--------- ---------- ---------- bmy_12026T0/1-233 MVAMPTAWCS IAVALLVALH EEPLGLPRAV PELLSSENAN FLNYARGGAR BACU000382/1-180 MVAMPTAWCS IVLALLVALH E--------- ---------- ---------- 51 100 ENSP00000361668/1-178 ---------- ---------- ----GKGQAA ATL--EQPAS SSHAQGTHLR ENSBTAP00000028571/1-177 ---------- ---------- ----GKSQAA TTPIPEQPAP LPRARGSHLR ENSTTRP00000005265/1-180 ---------- ---------- ----GKSQAA ATHTPEQPAP LPHARGSHLR bmy_12026T0/1-233 RGPHPSCARR LDPPLHLSLP PVHAGKSQAA APHAPEQPAP LPRARGSHLR BACU000382/1-180 ---------- ---------- ----GKSQAA APHAPEQPAP LPRARGSHLR 101 150 ENSP00000361668/1-178 LRRCSCSSWL DKECVYFCHL DIIWVNTPEQ TAPYGLGNPP RRRRRSLPRR ENSBTAP00000028571/1-177 TRRCSCSSWL DKECVYFCHL DIIWVNTPGQ TAPYGLGNPP RRRRRSLPRR ENSTTRP00000005265/1-180 LRRCSCSSWL DKECVYFCHL DIIWVNTPGQ TAPYGLGNPP RRQRRSLPGR bmy_12026T0/1-233 PRRCSCSSWL DKECVYFCHL DIIWVNTPGQ TAPYGLGNPP RRQRRSLPRR BACU000382/1-180 PRRCSCSSWL DKECVYFCHL DIIWVNTPGQ TAPYGLGNPP RRQRRSLPRR 151 200 ENSP00000361668/1-178 CQCSSARDPA CATFCLRRPW TEAGAVPSRK SPADVFQTGK TGATTGELLQ ENSBTAP00000028571/1-177 CECYSARDPA CATFCHQRPW TDAVAVPGSG SPAAAFQDGK TQATAGELLQ ENSTTRP00000005265/1-180 CECYSASDPA CATFCHRRPW TEAVAVPGSG SSAAMFQADK TWATAGELLQ bmy_12026T0/1-233 CECYSARDPA CATFCHRRPW TEAVAVPGSG SSAAMFQAGK TWATAGELLQ BACU000382/1-180 CECYSARDPA CATFCHRRPW TEAVAVPGSG SSADVFQAGK TWATAGELLQ 201 250 ENSP00000361668/1-178 RLRDISTVKS LFAKRQQEAM REPRSTHSRW RKR ENSBTAP00000028571/1-177 RLRVISATKI HFARQQQKPT RETRPTHSRQ RKR ENSTTRP00000005265/1-180 QLRDISAAQI RFARRQQKAT REPRPTHSRW RKR bmy_12026T0/1-233 QLRDISAAQI RFARQQQKAT REPRPTHSRW RKR BACU000382/1-180 QLRDISAAQI RFARQQQKAT REPRPTHSRW RKR