KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:17 2014 Check: 00 .. Name: bmy_09665T0/1-262 Len: 360 Check: 6561 Weight: 1.00 Name: BACU007507/1-178 Len: 360 Check: 9227 Weight: 1.00 Name: ENSP00000290722/1-341 Len: 360 Check: 5309 Weight: 1.00 Name: ENSTTRP00000011759/1-241 Len: 360 Check: 4161 Weight: 1.00 Name: ENSBTAP00000028587/1-341 Len: 360 Check: 7026 Weight: 1.00 // 1 50 bmy_09665T0/1-262 MKGKSDTGAN ASGHQASRGV HADVHHEKWA QNPGVGRGVL LGLLSAGREE BACU007507/1-178 ---------- MFGDELRVGY KVNIVEKV-- --SLISTLEF F-------LQ ENSP00000290722/1-341 MGTLPWLLAF FILGLQAWDT PTIVSRKEWG ARPLACRALL T-------LP ENSTTRP00000011759/1-241 RRMLLWLLLI SALDLGAWGA STIVSRKEWG LRFLTRRAQL T-------RP ENSBTAP00000028587/1-341 MRMLLWFLVL SALDLAAWGV PTIVSRKEWG ARSLTCRAQL T-------RP 51 100 bmy_09665T0/1-262 LAVEIHDLLR AEYGKSCENI SFEDCNWKVE DEKFITRKKE RRRNLPLNHV BACU007507/1-178 LAVEIHDLLR AEYGKSCENI SFEDCNWKVE DEKFIMRKKE RRS------- ENSP00000290722/1-341 VAYIITDQLP ---GMQCQQQ SV--CSQML- ------RGLQ SHSVYTIGWC ENSTTRP00000011759/1-241 VACVIMDQLT ---EVECQEQ NV--CSWKL- ------RGLQ SRSVYNTGWC ENSBTAP00000028587/1-341 VAYVITDQIT ---GMECEEQ NA--CSQKL- ------RGLQ SRSVYTKGWC 101 150 bmy_09665T0/1-262 SLPGSFLVGD NGRVYKGVGW NIQGMHDQGY NNVSLGLXFF GNKLGSRPSP BACU007507/1-178 -----FLAGD NGRVYKGVGW NTQGMHAQGY NNVSLGLTFF GNKL------ ENSP00000290722/1-341 DVAYNFLVGD DGRVYEGVGW NIQGLHTQGY NNISLGIAFF GNKIGSSPSP ENSTTRP00000011759/1-241 DVAYIFLVGD NGRVYKGVGW NIQGMHAQGY NSVSLGLAFF GNKLGSRPSP ENSBTAP00000028587/1-341 DVAYNFLVGN DGRVYEGVGW NIQGMHTQGY NNISLGLAFF GNNLGSSPSP 151 200 bmy_09665T0/1-262 AALSAAEDLI FYAIKKGHLS LRYIQPLLLK EESCLVPQQP LMPRKACPDI BACU007507/1-178 ---------- ---------- ---------- ---------- -----ACSNI ENSP00000290722/1-341 AALSAAEGLI SYAIQKGHLS PRYIQPLLLK EETCLDPQHP VMPRKVCPNI ENSTTRP00000011759/1-241 AALSAAEDLI FYAIKKGHMS LRYIQPLLLK EESCLVPQQP LMPRKACPNI ENSBTAP00000028587/1-341 TALSAAEDLI FYAIKNGHLS PRYIQPLLLK AESCLVPHQP LMPRKACPNI 201 250 bmy_09665T0/1-262 ITRSAWKARQ THCPTMNLPA KYVIIIHTVG ATCNISMDCR ICVRDIQSYH BACU007507/1-178 ITRSAWKARQ THCPTMNLPA KYVIIIHTVG ATCNISMDCR ICVRDIQSYH ENSP00000290722/1-341 IKRSAWEARE THCPKMNLPA KYVIIIHTAG TSCTVSTDCQ TVVRNIQSFH ENSTTRP00000011759/1-241 ITRSAWKARQ THCPTMKLPA KYVIIIHTVG ATCNISMDCR ICV-DIQSYH ENSBTAP00000028587/1-341 ITRSAWEARQ THCPTMSLPA KYVVIIHTAG ATCNVSMDCR IRVRDIQSYH 251 300 bmy_09665T0/1-262 MDTQNFCDIG YQ-------- ---------- ---------- ---------- BACU007507/1-178 MDTQNFCDIG YQ-------- ---------- ---------- ---------- ENSP00000290722/1-341 MDTRNFCDIG YHFLVGQDGG VYEGVGWHIQ GSHTYGFNDI ALGIAFIGYF ENSTTRP00000011759/1-241 MDTQNFCDIG Y--------- ---------- ---------- ---------- ENSBTAP00000028587/1-341 IDAKDFCDIG YHFLVGQDGG VYEGVGWHTE GSHTYGYNDI GLGIAFIGNF 301 350 bmy_09665T0/1-262 ---------- ---------- ---------- ---------- ---------- BACU007507/1-178 ---------- ---------- ---------- ---------- ---------- ENSP00000290722/1-341 VEKPPNAAAL EAAQDLIQCA VVEGYLTPNY LLMGHSDVVN ILSPGQALYN ENSTTRP00000011759/1-241 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028587/1-341 VEKPPNAAAL EAAQSLIHCS VVKGYLVPNY LLVGHSDVTD ILSPGRALYN 351 400 bmy_09665T0/1-262 ---------- BACU007507/1-178 ---------- ENSP00000290722/1-341 IISTWPHFKH ENSTTRP00000011759/1-241 ---------- ENSBTAP00000028587/1-341 IIKTWPHFRQ