KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:19 2014 Check: 00 .. Name: ENSTTRP00000004162/1-649 Len: 1097 Check: 6972 Weight: 1.00 Name: ENSP00000262965/1-654 Len: 1097 Check: 6304 Weight: 1.00 Name: ENSBTAP00000028599/1-639 Len: 1097 Check: 7445 Weight: 1.00 Name: bmy_15770T0/1-692 Len: 1097 Check: 1294 Weight: 1.00 Name: BACU006480/1-958 Len: 1097 Check: 8902 Weight: 1.00 // 1 50 ENSTTRP00000004162/1-649 MNQPQRMAPV GTDKELS--- -DLLDFSMMF PLPVANGKSR PTSLAGAQF- ENSP00000262965/1-654 MNQPQRMAPV GTDKELS--- -DLLDFSMMF PLPVTNGKGR PASLAGAQF- ENSBTAP00000028599/1-639 MNQSQRMAPV GTDKELS--- -DLLDFSMMF PLPVANGKSR PASLAGTQF- bmy_15770T0/1-692 -MGSARVGAS GRAAAPGWVG RGLESFPGRV RAPRGSAAGV ERPGAGPLTL BACU006480/1-958 -MSGGRPPSP KSNCFLSVVN RGLHNYCLL- ---------- EVSTTIPMF- 51 100 ENSTTRP00000004162/1-649 --GSS----- ---------- ---------- ---------- ---------- ENSP00000262965/1-654 --GGSGLEDR PSSGSWGSGD QSSSSFDPSR TFSEGTHFTE SHSSLSSSTF ENSBTAP00000028599/1-639 --GSSGLEDR PSSGSWGTSE QDSSSFDPGR TYSDGAHFGE SHSSLPSSTF bmy_15770T0/1-692 PSCPAGLEDR PSSGSWGAGE QNSSSFDPSR TYGDGAHFSE SHGTLASSTF BACU006480/1-958 --CPQ----- ---------- -----LPHSL TYSDGAHFSE SHGTLASSTF 101 150 ENSTTRP00000004162/1-649 ---------- ---------- ---------- ---------- ------GKGG ENSP00000262965/1-654 LGPGLG---- ---------- ---------- ---------- ------GKSG ENSBTAP00000028599/1-639 LGPGLG---- ---------- ---------- ---------- ------GKGS bmy_15770T0/1-692 LGPGLG---- ---------- ---------- ---------- ------GKGG BACU006480/1-958 LGPGLGEHRH PDRENQDRDL DEGPLSSPSF PTCRDGDSHR AFCVARGKGG 151 200 ENSTTRP00000004162/1-649 ERGAYTPFGR DAGVGSLT-- ---------- ---------- ---------- ENSP00000262965/1-654 ERGAYASFGR DAGVGGLT-- ---------- ---------- ---------- ENSBTAP00000028599/1-639 ERGAYAAFGR DAGVSSLT-- ---------- ---------- ---------- bmy_15770T0/1-692 ERGAYTPFGR DAGVGSLT-- ---------- ---------- ---------- BACU006480/1-958 ERGAYTPFGR DAGVSSLTQA GFLPSELALS SPGPLSPSGV KGGPHYDSYS 201 250 ENSTTRP00000004162/1-649 ---------- ---------- ---------- ---------- ---------- ENSP00000262965/1-654 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028599/1-639 ---------- ---------- ---------- ---------- ---------- bmy_15770T0/1-692 ---------- ---------- ---------- ---------- ---------- BACU006480/1-958 GHSRRRAADG GLVTLKSPTQ KYTGANVGPQ RGGPGPRLPI WAALEPEGRR 251 300 ENSTTRP00000004162/1-649 ---------- ---------- ---------Q XXXXXXXXXX XXXXXXXXXX ENSP00000262965/1-654 ---------- ---------- ---------Q AGFLSGELAL NSPGPLSPSG ENSBTAP00000028599/1-639 ---------- ---------- ---------Q VGFLPSELAL SSPGPLSPSG bmy_15770T0/1-692 ---------- ---------- ---------Q ASFLPSELAL SSPGPLSPSG BACU006480/1-958 HLATMEAPKP GLGLSRGWAG DRLLTLPLPQ AGFLPSELAL SSPGPLSPSG 301 350 ENSTTRP00000004162/1-649 XXXXXXXXXX XXXXXXXXXX XXXXXTQPKK VRKVPPGLPS SVYPPSSGDD ENSP00000262965/1-654 MKGTSQYYPS YSGSSRRRAA DGSLDTQPKK VRKVPPGLPS SVYPPSSGED ENSBTAP00000028599/1-639 IKGGSQYY-S YSGHPRRRAT DSSLDSQPKK VRKVPPGLPS SVYPPSSGDD bmy_15770T0/1-692 VKGGPHYY-S YSGHPRRRAA DGGLDTQPKK VRKVPPGLPS SVYPPSSGDD BACU006480/1-958 VKGGPHYY-S YSGHSRRRAA DGGLDTQPKK VRKVPPGLPS SVYPPSSGDD 351 400 ENSTTRP00000004162/1-649 YSRDTTAYPP TKTPSGTYPA SFYVADGSLH PSAELWSPPG QVGFGPMLGG ENSP00000262965/1-654 YGRDATAYPS AKTPSSTYPA PFYVADGSLH PSAELWSPPG QAGFGPMLGG ENSBTAP00000028599/1-639 YGRDPTTYPS AKTPSSSYPT PFYMADGSLH PSAELWSAPG QAGFGPMLGG bmy_15770T0/1-692 YSRDTAAYPP TKTPSGAYPA SFYVADGSLH PSAELWSPPG QVGFGPMLGG BACU006480/1-958 YSRDTAAYPP TKTPSGAYPA SFYVADGSLH PSAELWSPPG QVGFGPMLGG 401 450 ENSTTRP00000004162/1-649 GSSPLPLPAG GGSSVGGSGS GG-FGGLHQH ERM------- ---------- ENSP00000262965/1-654 GSSPLPLPPG SG-PVGSSGS SSTFGGLHQH ERM------- ---------- ENSBTAP00000028599/1-639 GSSPLPLPAG GGSSVG--GS GG-FGSLHQH ERM------- ---------- bmy_15770T0/1-692 GSSPLPLPAG GSSSVGGSGS GG-FGGLHQH ERMVGPTGWP WRGRCVGRAP BACU006480/1-958 GSSPLPLPAG GGSSVGGSGS GG-FGGLHQH ERM------- ---------- 451 500 ENSTTRP00000004162/1-649 ---------- -GYQLHGAEV NGGLPAVSTF SSAPTGAYSS VSSHTPPVSG ENSP00000262965/1-654 ---------- -GYQLHGAEV NGGLPSASSF SSAPGATYGG VSSHTPPVSG ENSBTAP00000028599/1-639 ---------- -GYQLHGAEV NGGLPAASTF -SGPAGTYSS ISSHTPPVSG bmy_15770T0/1-692 SDPSYPVPRT QGYQLHGAEV NGGLPAVSTF SSAPTGAYSS VSSHTPPVSG BACU006480/1-958 ---------- -GYQLHGAEV NGGLPAVSTF SSAPTGACSS LSSHTPPVSG 501 550 ENSTTRP00000004162/1-649 ADSLLGSRGT TAGSSGDALG KALASIYSPD QSSNNFSSSP STPVGSPQGL ENSP00000262965/1-654 ADSLLGSRGT TAGSSGDALG KALASIYSPD HSSNNFSSSP STPVGSPQGL ENSBTAP00000028599/1-639 ADSLLGSRGT TSSSSGDALG KALASIYSPD HSSNNFSSSP STPVGSPQGL bmy_15770T0/1-692 ADSLLGSRGT TAGSSGDALG KALASIYSPD QSSNNFSSSP STPVGSPQGL BACU006480/1-958 ADSLLGSRGT TAGSSGDALG KALASIYSPD QSSNNFSSSP STPVGSPQGL 551 600 ENSTTRP00000004162/1-649 AG-------- ------TSQW P--------- -------RAG AP---GALSP ENSP00000262965/1-654 AG-------- ------TSQW P--------- -------RAG AP---GALSP ENSBTAP00000028599/1-639 AG-------- ------TSQW P--------- -------RPG AP---GALSP bmy_15770T0/1-692 AGLCSVLGEG TGSADCSPGW AGSWTDHMPQ SSRSHGRRGG LPRGWGASKP BACU006480/1-958 AG-------- ------TSQW P--------- -------RAG AP---GALSP 601 650 ENSTTRP00000004162/1-649 SYDGGLHG-- -------LQS KMEDHLDEAI HVLRSHAVGT AGDVHGLLPG ENSP00000262965/1-654 SYDGGLHG-- -------LQS KIEDHLDEAI HVLRSHAVGT AGDMHTLLPG ENSBTAP00000028599/1-639 SYDGGLHG-- -------LQS KVEDHLDEAI HVLRSHAVGT AGDVHGLLPG bmy_15770T0/1-692 MLLGHSRGKG TSPLSTPQQS KMEDHLDEAI HVLRSHAVGT AGDVHGLLPG BACU006480/1-958 SYDGGLHG-- -------LQS KMEDHLDEAI HVLRSHAVGT AGDVHGMLPG 651 700 ENSTTRP00000004162/1-649 HGPLASGFAG AVMPLGGRHA GLVGGSHSED GLSSSGGLVH NHVA------ ENSP00000262965/1-654 HGALASGFTG P-MSLGGRHA GLVGGSHPED GLAGSTSLMH NHAALPSQPG ENSBTAP00000028599/1-639 HGALTSGFAG PVMPLGGRHA GLVGSGHSED GLSGSSGLVH NHVA------ bmy_15770T0/1-692 HGALASGFAG AVMPLGGRHA GLVGSSHSED GLSSSGGLVH NHVA------ BACU006480/1-958 HGALASGFAG AVMPLGGRHA GLVGGSHSED GLSSSGGLVH NHVA------ 701 750 ENSTTRP00000004162/1-649 -LPDLSRPPD SYSDLGR-GA APGPGDIKRE EHEDGENV-A ADTAEDE-KD ENSP00000262965/1-654 TLPDLSRPPD SYSGLGRAGA TAAASEIKRE EKEDEENTSA ADHSEEEKKE ENSBTAP00000028599/1-639 -LPDLSRQPD SYGDLGH-GT APGTTDIKRE EQEDEENV-A ADTAEDEKKD bmy_15770T0/1-692 -LPDLSRPPD SYSDLGR-GA APGPGDIKRE EQEDEEN--- ---------- BACU006480/1-958 -LPDLSRPPD SYSDLGR-GA APGPGDIKRE EQEDEENV-A ADTAEDEKKD 751 800 ENSTTRP00000004162/1-649 LKAPRTRTRC RPPHP----- ---------- ---------- ---------- ENSP00000262965/1-654 LKAPRARTSP DEDE------ ---------- ---------- ---------- ENSBTAP00000028599/1-639 LKAPRTR--- ---------- ---------- ---------- ---------- bmy_15770T0/1-692 ---------- ---------- ---------- ---------- ---------- BACU006480/1-958 LKAPRARXPD EDEDDLLPPE QKAEREKERR VANNARERLR VRDINEAFKE 801 850 ENSTTRP00000004162/1-649 ---------- ---------- ---------- ---------- ---------- ENSP00000262965/1-654 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028599/1-639 ---------- ---------- ---------- ---------- ---------- bmy_15770T0/1-692 ---------- ---------- ---------- ---------- ---------- BACU006480/1-958 LGRMCQLHLN SEKPQTKLLI LHQAVSVILN LEQQVRGVAQ ARGQGGRAGR 851 900 ENSTTRP00000004162/1-649 ---------- ---------- ---------- ---------- ---------- ENSP00000262965/1-654 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028599/1-639 ---------- ---------- ---------- ---------- ---------- bmy_15770T0/1-692 ---------- ---------- ---------- ---------- ---------- BACU006480/1-958 VPRETGRWRG CSCRAPRCAP GGPELGCGPR GQLSEPPFQT RWGDSTPCPP 901 950 ENSTTRP00000004162/1-649 ---------- ---------H CARAPREGAH AHGGLSGACT RTGRPAGPXX ENSP00000262965/1-654 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028599/1-639 ---------- ---------- ---------- ---------- ---------- bmy_15770T0/1-692 ---------- ---------- ---------- ---------- ---------- BACU006480/1-958 PSGYSTSARP QGPACRAQGG HSRPSSQAAR VQRGAGAVLW RPGRRGLQAV 951 1000 ENSTTRP00000004162/1-649 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262965/1-654 ---------- ---------- ---DDLLPPE QKAEREKERR VANNARERLR ENSBTAP00000028599/1-639 ---------- ---------S SSTEEVLSLE EKDLRDRERR MANNARERVR bmy_15770T0/1-692 ---------- ---------- ---------- EKDLRDRERR MANNARERVR BACU006480/1-958 ---------- ---------S CSTEEVLSLE EKDLRDRERR MANNARERVR 1001 1050 ENSTTRP00000004162/1-649 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRNL ENSP00000262965/1-654 VRDINEAFKE LGRMCQLHLN SEKPQTKLLI LHQAVSVILN LEQQVRERNL ENSBTAP00000028599/1-639 VRDINEAFRE LGRMCQLHLK SDKAQTKLLI LQQAVQVILG LEQQVRERNL bmy_15770T0/1-692 VRDINEAFRE LGRMCQLHLK SDKAQTKLLI LQQAVQVILG LEQQVRERNL BACU006480/1-958 VRDINEAFRE LGRMCQLHLK SDKAQTKLLI LQQAVQVILG LEQQVRERNL 1051 1100 ENSTTRP00000004162/1-649 NPKAACLKRR EEEKVSGVVG DAQMVLSAAH PGLGEAHNPA GHM---- ENSP00000262965/1-654 NPKAACLKRR EEEKVSGVVG DPQMVLSAPH PGLSEAHNPA GHM---- ENSBTAP00000028599/1-639 NPKAACLKRR EEEKVSGVVG DPQMVLSAAH PGLGEAHNPA GHL---- bmy_15770T0/1-692 NPKAACLKRR EEEKVSGVVG DAQMVLSAAH PGLGEAHNPA GHIRKLE BACU006480/1-958 NPKAACLKRR EEEKVSGVVG DAQMVLSAAH PGLGEAHNPA GHM----