KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:20 2014 Check: 00 .. Name: ENSTTRP00000007183/1-232 Len: 293 Check: 9988 Weight: 1.00 Name: bmy_14889T0/1-179 Len: 293 Check: 7903 Weight: 1.00 Name: ENSP00000428480/1-293 Len: 293 Check: 965 Weight: 1.00 Name: ENSBTAP00000028605/1-241 Len: 293 Check: 6491 Weight: 1.00 // 1 50 ENSTTRP00000007183/1-232 MMTMTTMADG LEGQDXXXXX XXXXX----- ---------- ---------- bmy_14889T0/1-179 ---------- ---------- ---------- ---------- ---------- ENSP00000428480/1-293 MMTMTTMADG LEGQDSSKSA FMEFGQQQQQ QQQQQQQQQQ QQQQPPPPPP ENSBTAP00000028605/1-241 MMTMTTMADG LEGQDSSKSA FMEFGQQQQX ---------- ---------- 51 100 ENSTTRP00000007183/1-232 ---------- ---------- ---------- ------XXXX XHQHHHFSSY bmy_14889T0/1-179 ---------- ---------- ---------- ---------- ---------- ENSP00000428480/1-293 PPPQPHSQQS SPAMAGAHYP LHCLHSAAAA AAAGSHHHHH HQHHHHGSPY ENSBTAP00000028605/1-241 ---------- ---------- ---------- -AAGS-HHHH HQHHHHGSPY 101 150 ENSTTRP00000007183/1-232 SSSGGGSYYH RSLTAYPYMI NSQHNPYFHY YHNNNTAAPT TGGDDDQQKT bmy_14889T0/1-179 -MKRGQSDNL PQLKRLRMLP EEQGPTVVFV F--------- ----PDQQKT ENSP00000428480/1-293 ASGGGNSYNH RSLAAYPYMS HSQHSPYLQS YHNSSAAAQT RGDDTDQQKT ENSBTAP00000028605/1-241 ASGGGNSYNH RSLAAYPYMS HSQHSPYLQS YHNSSAAAQT RGDDTDQQKT 151 200 ENSTTRP00000007183/1-232 TVIENGEIRF NGKGKKIRKP RTIYSSLQLQ ALNHRFQQTQ YLALPERAEL bmy_14889T0/1-179 TVIENGEIRF NGKGKKIRKP RTIYSSLQLQ ALNHRFQQTQ YLALPERAEL ENSP00000428480/1-293 TVIENGEIRF NGKGKKIRKP RTIYSSLQLQ ALNHRFQQTQ YLALPERAEL ENSBTAP00000028605/1-241 TVIENGEIRF NGKGKKIRKP RTIYSSLQLQ ALNHRFQQTQ YLALPERAEL 201 250 ENSTTRP00000007183/1-232 AASLGLTQTQ VKIWFQNKRS KFKKLLKQGS NPHESDPLSG SAALSPRSPA bmy_14889T0/1-179 AASLGLTQTQ VKIWFQNKRS KFKKLLKQGS NPHESDPLPG SAALSPRSPA ENSP00000428480/1-293 AASLGLTQTQ VKIWFQNKRS KFKKLLKQGS NPHESDPLQG SAALSPRSPA ENSBTAP00000028605/1-241 AASLGLTQTQ VKIWFQNKRS KFKKLLKQGS NPHESDPLPG SAALSPRSPA 251 300 ENSTTRP00000007183/1-232 LPPVWDVSAS AKGVSMPPNS YMPGYSHWYS SPHQDTMQRP QMM bmy_14889T0/1-179 LPPVWDVSAS AKGVSMPPNS YMPGYSHWYS SPHQDTMQRP QMM ENSP00000428480/1-293 LPPVWDVSAS AKGVSMPPNS YMPGYSHWYS SPHQDTMQRP QMM ENSBTAP00000028605/1-241 LPPVWDVSAS AKGVSMPPNS YMPGYSHWYS SPHQDTMQRP QMM